Wall clock time and date at job start Mon Mar 30 2020 01:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.64360 * 2 1 4 4 C 1.34780 * 119.99566 * 300.70485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47064 * 179.97438 * 6 4 3 8 8 C 1.34849 * 125.89246 * 85.00057 * 7 6 4 9 9 C 1.40888 * 107.41976 * 179.97438 * 8 7 6 10 10 C 1.34861 * 107.41525 * 359.97438 * 9 8 7 11 11 N 1.36338 * 108.21586 * 359.73866 * 10 9 8 12 12 H 0.96997 * 125.63570 * 180.26744 * 11 10 9 13 13 C 1.55160 * 110.71903 * 123.14068 * 2 1 3 14 14 C 1.55396 * 101.36220 * 153.94681 * 13 2 1 15 15 N 1.47423 * 104.87509 * 323.01582 * 14 13 2 16 16 C 1.36940 * 125.64961 * 204.10271 * 15 14 13 17 17 H 1.08000 * 120.00228 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99731 * 0.03677 * 16 15 14 19 19 N 1.31621 * 120.00205 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47026 * 59.99905 * 20 18 16 22 22 H 1.48502 * 109.46887 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46726 * 299.99421 * 20 18 16 24 24 C 1.47022 * 108.70399 * 24.13309 * 15 14 13 25 25 H 1.08999 * 109.47642 * 59.30160 * 1 2 3 26 26 H 1.09008 * 109.47356 * 179.29978 * 1 2 3 27 27 H 1.08998 * 109.47128 * 299.29593 * 1 2 3 28 28 H 0.96995 * 120.00423 * 120.69791 * 3 2 1 29 29 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 30 30 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 31 31 H 1.08001 * 126.28937 * 0.02562 * 8 7 6 32 32 H 1.07998 * 126.29217 * 179.97438 * 9 8 7 33 33 H 1.07997 * 125.88935 * 180.02562 * 10 9 8 34 34 H 1.09002 * 111.00432 * 272.11171 * 13 2 1 35 35 H 1.08997 * 111.00268 * 35.96924 * 13 2 1 36 36 H 1.09001 * 110.34064 * 204.16454 * 14 13 2 37 37 H 1.08999 * 110.34922 * 81.87050 * 14 13 2 38 38 H 0.97000 * 120.00066 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88489 * 239.52496 * 24 15 14 40 40 H 1.08994 * 109.88210 * 118.36215 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2116 -1.0036 5 8 1.0110 1.8331 -1.9070 6 6 2.2580 3.6217 -1.0040 7 6 1.7565 4.3473 -2.2259 8 6 0.5711 4.9800 -2.3387 9 6 0.5036 5.5210 -3.6379 10 6 1.6508 5.1987 -4.2694 11 7 2.4264 4.4836 -3.4056 12 1 3.3078 4.1280 -3.5994 13 6 2.0789 -0.7934 1.2152 14 6 3.4674 -1.2455 0.6837 15 7 3.2471 -1.5461 -0.7427 16 6 4.0076 -2.3902 -1.5072 17 1 3.7632 -2.5440 -2.5478 18 6 5.0926 -3.0482 -0.9444 19 7 5.3900 -2.8614 0.3241 20 14 6.1305 -4.1990 -1.9875 21 1 6.7185 -3.4434 -3.1225 22 1 7.2204 -4.7719 -1.1573 23 1 5.2780 -5.2961 -2.5117 24 6 2.0760 -0.7892 -1.2086 25 1 -0.3634 0.5246 -0.8836 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3633 0.5028 0.8962 28 1 2.6187 1.6736 0.7223 29 1 1.9159 4.1392 -0.1077 30 1 3.3477 3.5991 -1.0169 31 1 -0.1870 5.0585 -1.5735 32 1 -0.3161 6.0893 -4.0519 33 1 1.9122 5.4654 -5.2827 34 1 2.1821 -0.1489 2.0882 35 1 1.4468 -1.6529 1.4384 36 1 3.8031 -2.1378 1.2120 37 1 4.1955 -0.4419 0.7939 38 1 6.1484 -3.3209 0.7172 39 1 1.3140 -1.4754 -1.5781 40 1 2.3711 -0.0993 -1.9991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716853365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:17 Heat of formation + Delta-G solvation = 38.326517 kcal Electronic energy + Delta-G solvation = -21842.663228 eV Core-core repulsion = 18658.999600 eV Total energy + Delta-G solvation = -3183.663628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09050 -39.67430 -37.23292 -33.96647 -32.37028 -31.34362 -30.82665 -29.83385 -28.63345 -26.43179 -25.65119 -23.63211 -21.22051 -20.49768 -20.34056 -19.94951 -18.96067 -17.55666 -17.00444 -16.58050 -15.48159 -15.03874 -14.68130 -14.13856 -13.77548 -13.69493 -13.56725 -13.24583 -12.97924 -12.78352 -12.51144 -12.22120 -12.18385 -11.94513 -11.70275 -11.56121 -11.48130 -10.94513 -10.85469 -10.38421 -10.33778 -10.12271 -9.91127 -9.66189 -9.23870 -8.75550 -8.65830 -8.57922 -7.94981 -6.81805 -5.65979 -3.06370 2.28619 2.95625 3.06575 3.36421 3.40061 3.44093 3.45553 3.67026 4.49071 4.74750 5.04237 5.09236 5.24757 5.30351 5.39275 5.41390 5.50766 5.57911 5.59288 5.75354 5.78843 6.06684 6.19415 6.24626 6.29161 6.37312 6.37833 6.47123 6.54581 6.72873 6.84275 7.06679 7.17315 7.20588 7.44258 7.62363 7.64172 7.80686 7.91268 8.34886 8.59809 9.22640 9.83320 10.48508 11.38170 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.004515 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.260505 B = 6200.574344 C = 6960.449339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 N -0.710 5.710 4 C 0.512 3.488 5 O -0.525 6.525 6 C -0.075 4.075 7 C 0.040 3.960 8 C -0.184 4.184 9 C -0.203 4.203 10 C -0.015 4.015 11 N -0.552 5.552 12 H 0.412 0.588 13 C -0.147 4.147 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.219 4.219 17 H 0.075 0.925 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.138 3.862 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.397 0.603 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.010 0.990 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 14.943 0.100 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.075 3.925 3 N -0.362 5.362 4 C 0.297 3.703 5 O -0.401 6.401 6 C -0.116 4.116 7 C -0.073 4.073 8 C -0.209 4.209 9 C -0.228 4.228 10 C -0.146 4.146 11 N -0.146 5.146 12 H 0.248 0.752 13 C -0.186 4.186 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.347 4.347 17 H 0.093 0.907 18 C -0.207 4.207 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.011 3.989 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.231 0.769 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.760 14.458 -0.578 15.971 hybrid contribution 1.299 -0.564 -0.349 1.458 sum -5.461 13.894 -0.927 14.957 Atomic orbital electron populations 1.22047 0.94316 1.02179 1.02343 1.21319 0.92971 0.80489 0.97771 1.45985 1.52052 1.12412 1.25702 1.20363 0.81099 0.86712 0.82118 1.90696 1.36740 1.77223 1.35406 1.20163 1.02095 0.93061 0.96244 1.19523 0.94987 1.04830 0.88009 1.20565 0.96967 1.05016 0.98317 1.20825 0.98754 1.07659 0.95515 1.21743 0.93714 1.02822 0.96333 1.41913 1.17371 1.43954 1.11409 0.75184 1.23438 1.01236 0.98855 0.95100 1.22011 0.89321 1.00556 0.85239 1.44498 1.30526 1.50541 1.07476 1.19052 1.05981 1.16761 0.92916 0.90672 1.24752 0.98772 1.00729 0.96452 1.69766 1.30055 1.46618 1.10970 0.86155 0.79760 0.80657 0.78967 1.21343 1.21557 1.21135 1.21588 0.90184 0.93102 0.93988 0.90781 0.91926 0.93203 0.76943 0.87096 0.88550 0.85172 0.85042 0.82205 0.91867 0.90604 0.87498 0.97227 0.93759 0.95324 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.41 37.16 0.31 -2.11 16 2 C 0.16 2.86 0.80 -129.98 -0.10 2.76 16 3 N -0.71 -10.84 5.15 -45.91 -0.24 -11.08 16 4 C 0.51 7.96 7.04 -10.98 -0.08 7.89 16 5 O -0.52 -10.19 12.98 5.56 0.07 -10.12 16 6 C -0.07 -0.86 6.24 -29.03 -0.18 -1.04 16 7 C 0.04 0.52 5.66 -81.79 -0.46 0.06 16 8 C -0.18 -2.47 10.76 -39.78 -0.43 -2.90 16 9 C -0.20 -2.53 10.86 -39.78 -0.43 -2.96 16 10 C -0.01 -0.17 11.94 -16.75 -0.20 -0.37 16 11 N -0.55 -6.63 6.07 -9.12 -0.06 -6.68 16 12 H 0.41 4.11 8.96 -40.82 -0.37 3.74 16 13 C -0.15 -2.65 6.11 -24.32 -0.15 -2.80 16 14 C 0.15 3.61 5.88 -2.27 -0.01 3.60 16 15 N -0.60 -15.68 3.40 -169.77 -0.58 -16.26 16 16 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.14 3.11 6.16 -3.06 -0.02 3.09 16 25 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 26 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.40 5.05 8.48 -40.82 -0.35 4.71 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 35 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 36 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.03 0.67 7.80 -51.93 -0.41 0.26 16 40 H 0.03 0.74 6.68 -51.93 -0.35 0.40 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -33.83 325.29 -8.22 -42.05 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.85 Total: 7.68 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.00 Total: -1.59 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.31 Total: -60.14 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.83 -8.22 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716853365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.378 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds