Wall clock time and date at job start Mon Mar 30 2020 01:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.64360 * 2 1 4 4 C 1.34780 * 119.99566 * 300.70485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47064 * 179.97438 * 6 4 3 8 8 C 1.34849 * 125.89246 * 85.00057 * 7 6 4 9 9 C 1.40888 * 107.41976 * 179.97438 * 8 7 6 10 10 C 1.34861 * 107.41525 * 359.97438 * 9 8 7 11 11 N 1.36338 * 108.21586 * 359.73866 * 10 9 8 12 12 H 0.96997 * 125.63570 * 180.26744 * 11 10 9 13 13 C 1.55160 * 110.71903 * 123.14068 * 2 1 3 14 14 C 1.55396 * 101.36220 * 153.94681 * 13 2 1 15 15 N 1.47423 * 104.87509 * 323.01582 * 14 13 2 16 16 C 1.36940 * 125.64961 * 204.10271 * 15 14 13 17 17 H 1.08000 * 120.00228 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99731 * 0.03677 * 16 15 14 19 19 N 1.31621 * 120.00205 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47026 * 59.99905 * 20 18 16 22 22 H 1.48502 * 109.46887 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46726 * 299.99421 * 20 18 16 24 24 C 1.47022 * 108.70399 * 24.13309 * 15 14 13 25 25 H 1.08999 * 109.47642 * 59.30160 * 1 2 3 26 26 H 1.09008 * 109.47356 * 179.29978 * 1 2 3 27 27 H 1.08998 * 109.47128 * 299.29593 * 1 2 3 28 28 H 0.96995 * 120.00423 * 120.69791 * 3 2 1 29 29 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 30 30 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 31 31 H 1.08001 * 126.28937 * 0.02562 * 8 7 6 32 32 H 1.07998 * 126.29217 * 179.97438 * 9 8 7 33 33 H 1.07997 * 125.88935 * 180.02562 * 10 9 8 34 34 H 1.09002 * 111.00432 * 272.11171 * 13 2 1 35 35 H 1.08997 * 111.00268 * 35.96924 * 13 2 1 36 36 H 1.09001 * 110.34064 * 204.16454 * 14 13 2 37 37 H 1.08999 * 110.34922 * 81.87050 * 14 13 2 38 38 H 0.97000 * 120.00066 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88489 * 239.52496 * 24 15 14 40 40 H 1.08994 * 109.88210 * 118.36215 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2116 -1.0036 5 8 1.0110 1.8331 -1.9070 6 6 2.2580 3.6217 -1.0040 7 6 1.7565 4.3473 -2.2259 8 6 0.5711 4.9800 -2.3387 9 6 0.5036 5.5210 -3.6379 10 6 1.6508 5.1987 -4.2694 11 7 2.4264 4.4836 -3.4056 12 1 3.3078 4.1280 -3.5994 13 6 2.0789 -0.7934 1.2152 14 6 3.4674 -1.2455 0.6837 15 7 3.2471 -1.5461 -0.7427 16 6 4.0076 -2.3902 -1.5072 17 1 3.7632 -2.5440 -2.5478 18 6 5.0926 -3.0482 -0.9444 19 7 5.3900 -2.8614 0.3241 20 14 6.1305 -4.1990 -1.9875 21 1 6.7185 -3.4434 -3.1225 22 1 7.2204 -4.7719 -1.1573 23 1 5.2780 -5.2961 -2.5117 24 6 2.0760 -0.7892 -1.2086 25 1 -0.3634 0.5246 -0.8836 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3633 0.5028 0.8962 28 1 2.6187 1.6736 0.7223 29 1 1.9159 4.1392 -0.1077 30 1 3.3477 3.5991 -1.0169 31 1 -0.1870 5.0585 -1.5735 32 1 -0.3161 6.0893 -4.0519 33 1 1.9122 5.4654 -5.2827 34 1 2.1821 -0.1489 2.0882 35 1 1.4468 -1.6529 1.4384 36 1 3.8031 -2.1378 1.2120 37 1 4.1955 -0.4419 0.7939 38 1 6.1484 -3.3209 0.7172 39 1 1.3140 -1.4754 -1.5781 40 1 2.3711 -0.0993 -1.9991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716853365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:17 Heat of formation + Delta-G solvation = 15.027187 kcal Electronic energy + Delta-G solvation = -21843.673563 eV Core-core repulsion = 18658.999600 eV Total energy + Delta-G solvation = -3184.673963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03931 -41.01083 -38.79367 -35.69620 -33.80978 -32.77439 -31.74915 -31.37659 -30.30212 -27.56711 -27.37675 -25.37932 -22.55411 -22.10754 -21.40817 -20.94310 -20.39529 -19.05446 -18.36163 -17.89837 -17.05818 -16.67042 -16.21861 -15.61063 -15.30893 -14.99493 -14.65591 -14.36066 -14.23415 -14.13929 -14.03124 -13.68247 -13.35653 -13.25210 -13.14350 -13.04656 -12.80756 -12.76976 -12.44275 -12.10372 -12.04453 -11.96017 -11.68165 -11.51009 -10.75891 -10.59997 -9.95391 -9.68945 -8.90174 -8.87991 -7.79999 -5.23628 1.33367 1.43966 1.46499 1.53269 1.76660 2.09231 2.40894 2.47366 2.61270 3.29089 3.62440 3.71268 3.81177 4.02918 4.16640 4.18281 4.28062 4.47256 4.57795 4.63652 4.67799 4.69272 4.83513 4.88628 4.89883 4.92843 5.02005 5.11199 5.34999 5.38874 5.40934 5.45370 5.61993 5.73273 5.81092 6.13973 6.28100 6.30262 6.69911 6.82056 7.10135 7.41300 7.76134 8.39724 9.20869 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.004515 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.260505 B = 6200.574344 C = 6960.449339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.172 3.828 3 N -0.704 5.704 4 C 0.509 3.491 5 O -0.567 6.567 6 C -0.065 4.065 7 C 0.021 3.979 8 C -0.204 4.204 9 C -0.226 4.226 10 C -0.015 4.015 11 N -0.555 5.555 12 H 0.419 0.581 13 C -0.128 4.128 14 C 0.155 3.845 15 N -0.623 5.623 16 C -0.246 4.246 17 H 0.067 0.933 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.977 3.023 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.279 1.279 24 C 0.138 3.862 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.412 0.588 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.189 0.811 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.075 0.925 37 H -0.004 1.004 38 H 0.249 0.751 39 H 0.015 0.985 40 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 15.994 0.780 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.085 3.915 3 N -0.357 5.357 4 C 0.296 3.704 5 O -0.446 6.446 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.229 4.229 9 C -0.250 4.250 10 C -0.147 4.147 11 N -0.150 5.150 12 H 0.257 0.743 13 C -0.166 4.166 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.375 4.375 17 H 0.085 0.915 18 C -0.251 4.251 19 N -0.592 5.592 20 Si 0.805 3.195 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.205 1.205 24 C 0.012 3.988 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.248 0.752 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.206 0.794 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.014 0.986 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -6.822 15.534 0.126 16.966 hybrid contribution 1.320 -0.884 -0.622 1.707 sum -5.502 14.650 -0.496 15.656 Atomic orbital electron populations 1.21956 0.92529 1.02480 1.02961 1.21088 0.94076 0.81298 0.95077 1.45893 1.52171 1.11226 1.26376 1.21075 0.80166 0.88028 0.81108 1.90684 1.38703 1.78292 1.36926 1.20194 1.03001 0.90195 0.97090 1.19805 0.95335 1.05251 0.88864 1.20849 0.97428 1.05555 0.99052 1.21159 0.99806 1.08422 0.95620 1.22281 0.93268 1.01798 0.97342 1.42049 1.17801 1.43869 1.11325 0.74327 1.23288 0.97425 0.99682 0.96243 1.21844 0.92318 0.98734 0.84021 1.44771 1.31061 1.50553 1.08537 1.19320 1.07054 1.17926 0.93202 0.91481 1.25521 0.99748 1.02081 0.97705 1.70001 1.30088 1.47040 1.12036 0.85183 0.78081 0.78714 0.77514 1.20857 1.21239 1.20529 1.21654 0.88895 0.92605 0.95670 0.92465 0.91785 0.90240 0.75163 0.83792 0.86674 0.84703 0.83709 0.79378 0.87781 0.90201 0.90744 0.98571 0.94107 0.96704 0.97567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.41 71.98 0.61 -3.66 16 2 C 0.17 5.89 0.80 4.79 0.00 5.89 16 3 N -0.70 -20.12 5.15 -417.56 -2.15 -22.26 16 4 C 0.51 15.14 7.04 87.66 0.62 15.75 16 5 O -0.57 -21.95 12.98 -3.03 -0.04 -21.98 16 6 C -0.06 -1.34 6.24 29.10 0.18 -1.16 16 7 C 0.02 0.52 5.66 41.08 0.23 0.75 16 8 C -0.20 -5.28 10.76 22.14 0.24 -5.04 16 9 C -0.23 -5.41 10.86 22.14 0.24 -5.17 16 10 C -0.02 -0.33 11.94 83.22 0.99 0.66 16 11 N -0.56 -12.67 6.07 -182.76 -1.11 -13.78 16 12 H 0.42 7.91 8.96 -92.71 -0.83 7.08 16 13 C -0.13 -4.34 6.11 32.16 0.20 -4.14 16 14 C 0.16 7.32 5.88 87.03 0.51 7.83 16 15 N -0.62 -32.93 3.40 -691.02 -2.35 -35.28 16 16 C -0.25 -14.30 10.27 84.03 0.86 -13.44 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 19 N -0.94 -55.00 10.09 21.65 0.22 -54.78 16 20 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.14 6.33 6.16 86.73 0.53 6.87 16 25 H 0.06 1.96 6.21 -2.39 -0.01 1.95 16 26 H 0.06 1.90 8.12 -2.38 -0.02 1.88 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.41 9.27 8.48 -92.71 -0.79 8.49 16 29 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.10 2.71 8.06 -2.39 -0.02 2.69 16 35 H 0.08 2.68 8.05 -2.39 -0.02 2.66 16 36 H 0.07 4.02 5.87 -2.39 -0.01 4.01 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.01 0.72 7.80 -2.39 -0.02 0.70 16 40 H 0.01 0.32 6.68 -2.39 -0.02 0.30 16 Total: -1.00 -75.05 325.29 1.73 -73.33 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.56 Total: 24.42 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.68 Total: 2.33 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -5.39 Total: -126.10 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.98 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.05 1.73 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716853365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.354 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds