Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.34856 * 125.89179 * 85.00323 * 7 6 4 9 9 C 1.40895 * 107.41867 * 179.97438 * 8 7 6 10 10 C 1.34856 * 107.41615 * 0.02562 * 9 8 7 11 11 N 1.36344 * 125.89090 * 264.69303 * 7 6 4 12 12 H 0.96997 * 125.63939 * 0.02562 * 11 7 6 13 13 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 14 14 C 1.54325 * 102.94184 * 206.42607 * 13 2 1 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 2 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 26 26 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 27 27 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 28 28 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 29 29 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 30 30 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 31 31 H 1.07999 * 126.28975 * 0.02562 * 8 7 6 32 32 H 1.07993 * 126.29086 * 180.02562 * 9 8 7 33 33 H 1.07992 * 125.88789 * 179.97438 * 10 9 8 34 34 H 1.09000 * 110.72140 * 88.06437 * 13 2 1 35 35 H 1.08998 * 110.72520 * 324.78756 * 13 2 1 36 36 H 1.09002 * 109.88274 * 262.77538 * 14 13 2 37 37 H 1.09000 * 110.01178 * 141.68100 * 14 13 2 38 38 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 40 40 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.1645 4.3839 3.4006 9 6 1.3428 5.2149 4.1877 10 6 0.3705 5.6965 3.3868 11 7 0.5656 5.1982 2.1327 12 1 0.0129 5.3857 1.3579 13 6 2.0861 -0.8079 -1.2023 14 6 3.4674 -1.2742 -0.6961 15 7 3.4270 -1.2431 0.7733 16 6 4.4640 -1.5668 1.6072 17 1 4.3332 -1.5120 2.6778 18 6 5.6830 -1.9654 1.0763 19 7 5.8425 -2.0318 -0.2285 20 14 7.0977 -2.4063 2.2138 21 1 7.9011 -1.1904 2.4988 22 1 6.5588 -2.9527 3.4852 23 1 7.9577 -3.4262 1.5617 24 6 2.0835 -0.8120 1.2003 25 1 -0.3634 -1.0252 0.0699 26 1 -0.3633 0.5732 0.8529 27 1 -0.3634 0.4521 -0.9229 28 1 2.6639 1.6542 -0.6973 29 1 3.3113 3.6109 1.0392 30 1 1.9317 4.1389 0.0462 31 1 3.0360 3.8425 3.7377 32 1 1.4685 5.4271 5.2390 33 1 -0.4230 6.3650 3.6862 34 1 2.1922 -0.1699 -2.0797 35 1 1.4467 -1.6632 -1.4210 36 1 4.2426 -0.5999 -1.0600 37 1 3.6676 -2.2890 -1.0400 38 1 6.6945 -2.3100 -0.5994 39 1 1.4523 -1.6782 1.3988 40 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716853366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = 37.603199 kcal Electronic energy + Delta-G solvation = -21961.643862 eV Core-core repulsion = 18777.948869 eV Total energy + Delta-G solvation = -3183.694993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05050 -39.60614 -37.21997 -33.86452 -32.33224 -31.31814 -30.80258 -29.83330 -28.64468 -26.38470 -25.61717 -23.63100 -21.24121 -20.48552 -20.17644 -19.89015 -18.98151 -17.54038 -16.97123 -16.47950 -15.42604 -14.98797 -14.60645 -14.11870 -13.87528 -13.61552 -13.52802 -13.17517 -13.08894 -12.81572 -12.45537 -12.12824 -11.97086 -11.88816 -11.75961 -11.61966 -11.46068 -10.87420 -10.84246 -10.34554 -10.32549 -10.05724 -9.97394 -9.63277 -9.20205 -8.70622 -8.62485 -8.47609 -7.90576 -6.77358 -5.68379 -3.00138 2.31212 3.00681 3.12951 3.37771 3.42715 3.48214 3.50182 3.72393 4.53668 4.80883 5.05014 5.10118 5.23838 5.30386 5.42470 5.51047 5.52609 5.64728 5.66688 5.75047 5.86325 6.04677 6.16674 6.18115 6.34810 6.39259 6.42265 6.47547 6.57227 6.71871 6.84303 7.11308 7.18128 7.24673 7.57105 7.58242 7.66069 7.82767 7.97426 8.28827 8.65911 9.26386 9.86425 10.52472 11.43693 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.005116 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.890279 B = 5471.961630 C = 6495.858881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 N -0.703 5.703 4 C 0.514 3.486 5 O -0.529 6.529 6 C -0.074 4.074 7 C 0.039 3.961 8 C -0.179 4.179 9 C -0.200 4.200 10 C -0.019 4.019 11 N -0.555 5.555 12 H 0.409 0.591 13 C -0.147 4.147 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.133 3.867 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.398 0.602 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.251 0.749 39 H 0.024 0.976 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 13.684 -1.697 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 N -0.353 5.353 4 C 0.299 3.701 5 O -0.405 6.405 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.204 4.204 9 C -0.225 4.225 10 C -0.150 4.150 11 N -0.150 5.150 12 H 0.245 0.755 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.006 3.994 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.232 0.768 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.766 13.356 -1.196 17.197 hybrid contribution 0.926 -0.109 -0.137 0.943 sum -9.840 13.247 -1.333 16.556 Atomic orbital electron populations 1.22032 0.94447 1.02320 1.02278 1.21479 0.92521 0.80934 0.97968 1.45794 1.48754 1.11779 1.29004 1.20327 0.81461 0.86718 0.81556 1.90664 1.35452 1.78317 1.36115 1.20158 1.02739 0.92477 0.96118 1.19522 0.91885 0.99444 0.96526 1.20680 1.03071 1.04315 0.92335 1.20854 0.98272 1.03932 0.99412 1.21700 1.03215 1.05671 0.84377 1.41847 1.24097 1.38604 1.10421 0.75549 1.23222 1.00492 0.98896 0.95935 1.21150 0.89964 0.99910 0.83724 1.44448 1.07661 1.79038 1.01785 1.19073 0.89365 1.37458 0.89019 0.90594 1.24751 0.97735 1.02038 0.95998 1.69951 1.24059 1.54188 1.09171 0.86134 0.82361 0.77785 0.79630 1.21687 1.20727 1.21745 1.21910 0.87529 0.94812 0.95122 0.92029 0.90403 0.93436 0.76819 0.86753 0.88922 0.84903 0.85019 0.82283 0.91824 0.90994 0.93654 0.93885 0.93911 0.95816 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.59 37.16 0.32 -2.06 16 2 C 0.16 2.79 0.82 -129.55 -0.11 2.68 16 3 N -0.70 -11.13 5.19 -45.52 -0.24 -11.36 16 4 C 0.51 8.23 7.21 -10.98 -0.08 8.15 16 5 O -0.53 -10.32 12.87 5.56 0.07 -10.24 16 6 C -0.07 -0.90 6.24 -29.04 -0.18 -1.08 16 7 C 0.04 0.53 5.66 -81.79 -0.46 0.07 16 8 C -0.18 -2.68 10.77 -39.78 -0.43 -3.11 16 9 C -0.20 -2.64 10.86 -39.78 -0.43 -3.07 16 10 C -0.02 -0.21 11.94 -16.74 -0.20 -0.41 16 11 N -0.55 -6.26 6.07 -9.12 -0.06 -6.31 16 12 H 0.41 3.37 8.96 -40.82 -0.37 3.01 16 13 C -0.15 -2.59 5.97 -24.90 -0.15 -2.74 16 14 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 15 N -0.60 -15.49 3.39 -169.93 -0.58 -16.06 16 16 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.93 -26.93 10.31 55.49 0.57 -26.36 16 20 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.13 2.96 6.18 -2.41 -0.01 2.94 16 25 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.08 1.34 5.92 -51.93 -0.31 1.04 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.40 5.52 8.51 -40.82 -0.35 5.17 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 36 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 37 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.54 7.99 -51.93 -0.41 0.12 16 40 H 0.05 1.22 6.89 -51.93 -0.36 0.86 16 LS Contribution 326.15 15.07 4.91 4.91 Total: -1.00 -33.95 326.15 -8.24 -42.19 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.90 Total: 7.12 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.00 Total: -1.28 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.30 Total: -60.10 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.95 -8.24 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716853366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds