Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.34856 * 125.89179 * 85.00323 * 7 6 4 9 9 C 1.40895 * 107.41867 * 179.97438 * 8 7 6 10 10 C 1.34856 * 107.41615 * 0.02562 * 9 8 7 11 11 N 1.36344 * 125.89090 * 264.69303 * 7 6 4 12 12 H 0.96997 * 125.63939 * 0.02562 * 11 7 6 13 13 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 14 14 C 1.54325 * 102.94184 * 206.42607 * 13 2 1 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 2 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 26 26 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 27 27 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 28 28 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 29 29 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 30 30 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 31 31 H 1.07999 * 126.28975 * 0.02562 * 8 7 6 32 32 H 1.07993 * 126.29086 * 180.02562 * 9 8 7 33 33 H 1.07992 * 125.88789 * 179.97438 * 10 9 8 34 34 H 1.09000 * 110.72140 * 88.06437 * 13 2 1 35 35 H 1.08998 * 110.72520 * 324.78756 * 13 2 1 36 36 H 1.09002 * 109.88274 * 262.77538 * 14 13 2 37 37 H 1.09000 * 110.01178 * 141.68100 * 14 13 2 38 38 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 40 40 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.1645 4.3839 3.4006 9 6 1.3428 5.2149 4.1877 10 6 0.3705 5.6965 3.3868 11 7 0.5656 5.1982 2.1327 12 1 0.0129 5.3857 1.3579 13 6 2.0861 -0.8079 -1.2023 14 6 3.4674 -1.2742 -0.6961 15 7 3.4270 -1.2431 0.7733 16 6 4.4640 -1.5668 1.6072 17 1 4.3332 -1.5120 2.6778 18 6 5.6830 -1.9654 1.0763 19 7 5.8425 -2.0318 -0.2285 20 14 7.0977 -2.4063 2.2138 21 1 7.9011 -1.1904 2.4988 22 1 6.5588 -2.9527 3.4852 23 1 7.9577 -3.4262 1.5617 24 6 2.0835 -0.8120 1.2003 25 1 -0.3634 -1.0252 0.0699 26 1 -0.3633 0.5732 0.8529 27 1 -0.3634 0.4521 -0.9229 28 1 2.6639 1.6542 -0.6973 29 1 3.3113 3.6109 1.0392 30 1 1.9317 4.1389 0.0462 31 1 3.0360 3.8425 3.7377 32 1 1.4685 5.4271 5.2390 33 1 -0.4230 6.3650 3.6862 34 1 2.1922 -0.1699 -2.0797 35 1 1.4467 -1.6632 -1.4210 36 1 4.2426 -0.5999 -1.0600 37 1 3.6676 -2.2890 -1.0400 38 1 6.6945 -2.3100 -0.5994 39 1 1.4523 -1.6782 1.3988 40 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716853366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = 13.941423 kcal Electronic energy + Delta-G solvation = -21962.669914 eV Core-core repulsion = 18777.948869 eV Total energy + Delta-G solvation = -3184.721045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03792 -40.96654 -38.79359 -35.61404 -33.80138 -32.77503 -31.76949 -31.39809 -30.29990 -27.52235 -27.37823 -25.39244 -22.62875 -21.94259 -21.40929 -20.96341 -20.40617 -19.04275 -18.32543 -17.85942 -17.00600 -16.62223 -16.22204 -15.60769 -15.41101 -15.06790 -14.59237 -14.39951 -14.21768 -14.15276 -13.84477 -13.62552 -13.47539 -13.30627 -13.10566 -12.96192 -12.84132 -12.73418 -12.46606 -12.09887 -12.02532 -11.95344 -11.68694 -11.54203 -10.71238 -10.54739 -9.92519 -9.68910 -8.88820 -8.85924 -7.85853 -5.19474 1.32321 1.44348 1.45215 1.54262 1.77534 2.08738 2.42348 2.48452 2.61564 3.32460 3.59766 3.71325 3.83208 4.05250 4.15364 4.20966 4.27175 4.48922 4.57868 4.64878 4.68024 4.71222 4.86231 4.87136 4.89469 4.93484 5.03219 5.10102 5.37216 5.39293 5.42973 5.45135 5.66226 5.73432 5.80963 6.10946 6.20427 6.24439 6.72462 6.88175 7.12238 7.42382 7.77653 8.41821 9.23818 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.005116 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.890279 B = 5471.961630 C = 6495.858881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.169 3.831 3 N -0.700 5.700 4 C 0.511 3.489 5 O -0.567 6.567 6 C -0.065 4.065 7 C 0.028 3.972 8 C -0.218 4.218 9 C -0.230 4.230 10 C -0.004 4.004 11 N -0.545 5.545 12 H 0.425 0.575 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.944 5.944 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.277 1.277 23 H -0.289 1.289 24 C 0.130 3.870 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.409 0.591 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.198 0.802 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.021 0.979 37 H 0.007 0.993 38 H 0.248 0.752 39 H 0.020 0.980 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.707 15.229 -2.940 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.082 3.918 3 N -0.351 5.351 4 C 0.298 3.702 5 O -0.446 6.446 6 C -0.106 4.106 7 C -0.085 4.085 8 C -0.243 4.243 9 C -0.254 4.254 10 C -0.136 4.136 11 N -0.141 5.141 12 H 0.264 0.736 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.347 5.347 16 C -0.372 4.372 17 H 0.084 0.916 18 C -0.250 4.250 19 N -0.593 5.593 20 Si 0.801 3.199 21 H -0.212 1.212 22 H -0.202 1.202 23 H -0.215 1.215 24 C 0.003 3.997 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.245 0.755 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.215 0.785 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.132 14.925 -2.469 19.391 hybrid contribution 1.335 -0.599 0.321 1.498 sum -10.797 14.326 -2.148 18.067 Atomic orbital electron populations 1.21937 0.92162 1.02848 1.03061 1.21310 0.93965 0.81341 0.95228 1.45775 1.48903 1.10953 1.29494 1.20969 0.80649 0.87963 0.80598 1.90653 1.37272 1.79276 1.37399 1.20158 1.02697 0.90072 0.97646 1.19627 0.92610 0.99914 0.96376 1.20836 1.03695 1.05765 0.93984 1.21119 0.99185 1.04792 1.00335 1.22272 1.02873 1.04651 0.83788 1.41873 1.23407 1.37617 1.11182 0.73583 1.23091 0.96731 0.99988 0.96809 1.20958 0.93028 0.97448 0.82578 1.44688 1.08300 1.78981 1.02691 1.19306 0.90748 1.37914 0.89251 0.91582 1.25484 0.99834 1.02161 0.97478 1.70140 1.24260 1.54538 1.10394 0.85176 0.79294 0.77451 0.77997 1.21176 1.20208 1.21540 1.22017 0.86317 0.94916 0.96405 0.91344 0.92074 0.90441 0.75479 0.86316 0.84695 0.86745 0.84208 0.78494 0.88197 0.89389 0.96105 0.97502 0.94279 0.96223 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.59 71.98 0.62 -3.44 16 2 C 0.17 5.72 0.82 5.07 0.00 5.72 16 3 N -0.70 -20.97 5.19 -416.31 -2.16 -23.13 16 4 C 0.51 15.78 7.21 87.66 0.63 16.41 16 5 O -0.57 -22.02 12.87 -3.02 -0.04 -22.06 16 6 C -0.07 -1.48 6.24 29.10 0.18 -1.29 16 7 C 0.03 0.74 5.66 41.08 0.23 0.97 16 8 C -0.22 -6.65 10.77 22.14 0.24 -6.41 16 9 C -0.23 -5.99 10.86 22.14 0.24 -5.75 16 10 C 0.00 -0.09 11.94 83.21 0.99 0.91 16 11 N -0.54 -10.96 6.07 -182.77 -1.11 -12.07 16 12 H 0.43 5.58 8.96 -92.71 -0.83 4.75 16 13 C -0.13 -4.24 5.97 31.78 0.19 -4.05 16 14 C 0.18 8.74 5.37 86.73 0.47 9.21 16 15 N -0.62 -32.61 3.39 -691.55 -2.35 -34.95 16 16 C -0.24 -14.20 10.28 84.03 0.86 -13.34 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.06 -3.23 5.49 84.86 0.47 -2.77 16 19 N -0.94 -56.01 10.31 21.65 0.22 -55.79 16 20 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 C 0.13 5.85 6.18 86.93 0.54 6.39 16 25 H 0.07 1.86 8.07 -2.39 -0.02 1.84 16 26 H 0.06 2.01 5.92 -2.39 -0.01 1.99 16 27 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.41 10.38 8.51 -92.71 -0.79 9.59 16 29 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.10 2.64 8.09 -2.39 -0.02 2.62 16 35 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 36 H 0.02 1.07 7.38 -2.39 -0.02 1.06 16 37 H 0.01 0.36 7.50 -2.39 -0.02 0.35 16 38 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 40 H 0.02 1.18 6.89 -2.38 -0.02 1.16 16 Total: -1.00 -76.68 326.15 1.69 -74.99 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.56 Total: 21.64 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.66 Total: 2.57 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.39 Total: -125.94 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.04 Total: -22.06 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.68 1.69 -74.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716853366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.931 kcal (2) G-P(sol) polarization free energy of solvation -76.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds