Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34653 * 125.79966 * 2 1 4 4 H 0.96996 * 124.85295 * 359.97438 * 3 2 1 5 5 C 1.36454 * 110.29618 * 179.73262 * 3 2 1 6 6 C 1.34483 * 108.85621 * 0.26453 * 5 3 2 7 7 C 1.36770 * 125.80026 * 180.19124 * 2 1 3 8 8 C 1.47262 * 126.94404 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00000 * 0.33265 * 8 7 2 10 10 N 1.34776 * 120.00000 * 180.32810 * 8 7 2 11 11 C 1.46494 * 120.00106 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47351 * 180.85402 * 11 10 8 13 13 N 1.46493 * 112.85180 * 292.10792 * 12 11 10 14 14 C 1.36935 * 119.99885 * 294.88542 * 13 12 11 15 15 H 1.08001 * 120.00024 * 353.68866 * 14 13 12 16 16 C 1.38818 * 120.00260 * 173.68753 * 14 13 12 17 17 N 1.31623 * 119.99916 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00248 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47324 * 60.00133 * 18 16 14 20 20 H 1.48505 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47298 * 300.00101 * 18 16 14 22 22 C 1.53778 * 113.61689 * 160.90810 * 12 11 10 23 23 C 1.53954 * 87.02423 * 220.05122 * 22 12 11 24 24 C 1.53778 * 113.61370 * 63.30199 * 12 11 10 25 25 H 1.09002 * 109.46757 * 90.02912 * 1 2 3 26 26 H 1.09005 * 109.46974 * 210.02214 * 1 2 3 27 27 H 1.08997 * 109.47087 * 330.02950 * 1 2 3 28 28 H 1.07997 * 125.56616 * 180.26238 * 5 3 2 29 29 H 1.07995 * 126.83507 * 180.02562 * 6 5 3 30 30 H 0.97001 * 120.00121 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47081 * 300.85133 * 11 10 8 32 32 H 1.09000 * 109.47714 * 60.85406 * 11 10 8 33 33 H 0.97005 * 120.00623 * 114.88257 * 13 12 11 34 34 H 0.96996 * 120.00216 * 180.02562 * 17 16 14 35 35 H 1.09006 * 113.61483 * 334.57222 * 22 12 11 36 36 H 1.09003 * 113.61497 * 105.46855 * 22 12 11 37 37 H 1.09006 * 113.53193 * 270.81588 * 23 22 12 38 38 H 1.08997 * 113.66722 * 139.93586 * 23 22 12 39 39 H 1.09001 * 113.62003 * 254.53336 * 24 12 11 40 40 H 1.09004 * 113.61638 * 25.43423 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6096 0.7274 0.0060 6 6 3.6883 -0.6151 0.0041 7 6 2.3071 -1.1093 -0.0037 8 6 1.8703 -2.5156 -0.0079 9 8 0.6840 -2.7839 -0.0144 10 7 2.7850 -3.5054 -0.0046 11 6 2.3505 -4.9044 -0.0093 12 6 3.5765 -5.8194 0.0173 13 7 4.3607 -5.7558 -1.2183 14 6 3.8179 -6.1931 -2.3970 15 1 2.8528 -6.6779 -2.4001 16 6 4.5080 -6.0132 -3.5880 17 7 5.6839 -5.4220 -3.5844 18 14 3.7672 -6.6091 -5.1959 19 1 2.4694 -5.9251 -5.4266 20 1 4.6955 -6.3002 -6.3131 21 1 3.5480 -8.0762 -5.1264 22 6 3.2649 -7.2537 0.4761 23 6 4.5897 -7.2054 1.2589 24 6 4.4238 -5.6769 1.2927 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.4497 1.4060 0.0113 29 1 4.5890 -1.2109 0.0079 30 1 3.7311 -3.2915 0.0009 31 1 1.7346 -5.0965 0.8693 32 1 1.7696 -5.1015 -0.9103 33 1 5.2646 -5.4040 -1.2017 34 1 6.1660 -5.2959 -4.4166 35 1 2.3836 -7.3266 1.1134 36 1 3.2626 -7.9810 -0.3358 37 1 5.4504 -7.5385 0.6788 38 1 4.5342 -7.6726 2.2421 39 1 5.3559 -5.1331 1.1392 40 1 3.8600 -5.3179 2.1537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717149616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = 34.558278 kcal Electronic energy + Delta-G solvation = -21690.852309 eV Core-core repulsion = 18507.025278 eV Total energy + Delta-G solvation = -3183.827031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08391 -39.13784 -37.95537 -33.71427 -33.18538 -31.43293 -30.99302 -29.90752 -27.33806 -25.98724 -25.21275 -23.81133 -22.41885 -21.24327 -20.44988 -19.14546 -18.03802 -17.56193 -17.04470 -15.83356 -15.32583 -15.02019 -14.83900 -14.26752 -14.03146 -13.77923 -13.60393 -13.16562 -13.08849 -12.89275 -12.60451 -12.48666 -12.46980 -11.92147 -11.67061 -11.44166 -11.14209 -10.95175 -10.77868 -10.31784 -10.19073 -10.02089 -9.66216 -9.42503 -9.29397 -8.80345 -8.74568 -8.31290 -7.99107 -6.96917 -5.76345 -3.05341 1.99422 2.56727 3.19349 3.46710 3.50945 3.52668 3.97522 4.07762 4.59885 4.91135 5.06143 5.24929 5.26962 5.31042 5.35888 5.45381 5.53359 5.63520 5.64571 5.71044 5.86757 6.00282 6.03632 6.16023 6.21417 6.26049 6.34698 6.39456 6.48753 6.65885 6.80667 6.87444 7.00988 7.03758 7.07973 7.25196 7.49897 7.75684 8.28470 8.42832 8.94077 9.53822 10.08200 10.43530 11.45846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.005489 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.945613 B = 5100.280914 C = 5930.317880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.095 3.905 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.024 4.024 6 C -0.162 4.162 7 C -0.226 4.226 8 C 0.585 3.415 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.122 3.878 12 C 0.174 3.826 13 N -0.699 5.699 14 C -0.233 4.233 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.151 4.151 23 C -0.129 4.129 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.167 0.833 29 H 0.146 0.854 30 H 0.400 0.600 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 10.931 10.919 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 N -0.153 5.153 4 H 0.248 0.752 5 C -0.151 4.151 6 C -0.186 4.186 7 C -0.236 4.236 8 C 0.373 3.627 9 O -0.448 6.448 10 N -0.348 5.348 11 C -0.004 4.004 12 C 0.081 3.919 13 N -0.339 5.339 14 C -0.364 4.364 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.191 4.191 23 C -0.166 4.166 24 C -0.182 4.182 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.234 0.766 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.964 10.781 10.735 16.003 hybrid contribution 0.453 0.391 -1.132 1.280 sum -4.511 11.172 9.603 15.407 Atomic orbital electron populations 1.20535 0.87205 1.03813 1.03356 1.20304 0.93621 0.85693 1.02599 1.41542 1.06273 1.08158 1.59282 0.75176 1.21666 0.85534 0.96462 1.11434 1.22118 0.96116 0.93633 1.06733 1.20280 0.93141 0.92469 1.17681 1.17316 0.85414 0.84056 0.75915 1.90674 1.16814 1.84600 1.52696 1.45527 1.09633 1.05972 1.73672 1.21801 0.97748 0.80034 1.00791 1.20813 0.90799 0.92938 0.87358 1.42041 1.14771 1.75364 1.01752 1.19058 1.02220 1.30595 0.84532 0.91214 1.24709 0.97102 1.01162 0.97535 1.69641 1.13871 1.48149 1.26310 0.86315 0.78152 0.78372 0.83654 1.21258 1.21790 1.21277 1.23344 0.96356 0.99699 0.99733 1.22666 0.98922 0.95931 0.99092 1.23133 1.00176 0.97011 0.97858 0.90631 0.88020 0.92293 0.81556 0.83629 0.76610 0.92928 0.91508 0.77962 0.93534 0.91344 0.90764 0.90096 0.92808 0.91709 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.87 36.01 0.36 -0.73 16 2 C 0.10 1.30 7.17 -81.88 -0.59 0.72 16 3 N -0.56 -5.80 5.90 -9.11 -0.05 -5.85 16 4 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16 5 C -0.02 -0.27 11.89 -16.82 -0.20 -0.47 16 6 C -0.16 -2.27 10.56 -37.50 -0.40 -2.67 16 7 C -0.23 -3.71 6.29 -103.35 -0.65 -4.36 16 8 C 0.58 11.28 7.81 -12.59 -0.10 11.18 16 9 O -0.57 -12.15 14.82 5.26 0.08 -12.07 16 10 N -0.70 -13.11 5.42 -61.44 -0.33 -13.44 16 11 C 0.12 2.39 5.08 -4.04 -0.02 2.37 16 12 C 0.17 3.33 0.80 -131.01 -0.10 3.22 16 13 N -0.70 -16.47 5.18 -46.48 -0.24 -16.71 16 14 C -0.23 -6.26 9.04 -15.06 -0.14 -6.40 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.43 13.07 55.49 0.73 -26.71 16 18 Si 0.90 22.59 29.55 -169.99 -5.02 17.56 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 C -0.15 -2.66 7.29 -25.83 -0.19 -2.85 16 23 C -0.13 -2.05 8.00 -25.83 -0.21 -2.26 16 24 C -0.14 -2.29 7.05 -25.92 -0.18 -2.48 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 1.43 6.48 -51.93 -0.34 1.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.15 1.92 7.69 -52.49 -0.40 1.52 16 30 H 0.40 7.11 7.43 -40.82 -0.30 6.81 16 31 H 0.05 0.96 8.02 -51.93 -0.42 0.55 16 32 H 0.07 1.51 7.80 -51.93 -0.41 1.11 16 33 H 0.39 9.67 7.87 -40.82 -0.32 9.35 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 36 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -32.46 334.71 -8.19 -40.65 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -5.88 Total: 16.61 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.51 Total: -5.08 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.10 Total: -62.71 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.46 -8.19 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717149616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.209 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds