Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34653 * 125.79966 * 2 1 4 4 H 0.96996 * 124.85295 * 359.97438 * 3 2 1 5 5 C 1.36454 * 110.29618 * 179.73262 * 3 2 1 6 6 C 1.34483 * 108.85621 * 0.26453 * 5 3 2 7 7 C 1.36770 * 125.80026 * 180.19124 * 2 1 3 8 8 C 1.47262 * 126.94404 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00000 * 0.33265 * 8 7 2 10 10 N 1.34776 * 120.00000 * 180.32810 * 8 7 2 11 11 C 1.46494 * 120.00106 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47351 * 180.85402 * 11 10 8 13 13 N 1.46493 * 112.85180 * 292.10792 * 12 11 10 14 14 C 1.36935 * 119.99885 * 294.88542 * 13 12 11 15 15 H 1.08001 * 120.00024 * 353.68866 * 14 13 12 16 16 C 1.38818 * 120.00260 * 173.68753 * 14 13 12 17 17 N 1.31623 * 119.99916 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00248 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47324 * 60.00133 * 18 16 14 20 20 H 1.48505 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47298 * 300.00101 * 18 16 14 22 22 C 1.53778 * 113.61689 * 160.90810 * 12 11 10 23 23 C 1.53954 * 87.02423 * 220.05122 * 22 12 11 24 24 C 1.53778 * 113.61370 * 63.30199 * 12 11 10 25 25 H 1.09002 * 109.46757 * 90.02912 * 1 2 3 26 26 H 1.09005 * 109.46974 * 210.02214 * 1 2 3 27 27 H 1.08997 * 109.47087 * 330.02950 * 1 2 3 28 28 H 1.07997 * 125.56616 * 180.26238 * 5 3 2 29 29 H 1.07995 * 126.83507 * 180.02562 * 6 5 3 30 30 H 0.97001 * 120.00121 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47081 * 300.85133 * 11 10 8 32 32 H 1.09000 * 109.47714 * 60.85406 * 11 10 8 33 33 H 0.97005 * 120.00623 * 114.88257 * 13 12 11 34 34 H 0.96996 * 120.00216 * 180.02562 * 17 16 14 35 35 H 1.09006 * 113.61483 * 334.57222 * 22 12 11 36 36 H 1.09003 * 113.61497 * 105.46855 * 22 12 11 37 37 H 1.09006 * 113.53193 * 270.81588 * 23 22 12 38 38 H 1.08997 * 113.66722 * 139.93586 * 23 22 12 39 39 H 1.09001 * 113.62003 * 254.53336 * 24 12 11 40 40 H 1.09004 * 113.61638 * 25.43423 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6096 0.7274 0.0060 6 6 3.6883 -0.6151 0.0041 7 6 2.3071 -1.1093 -0.0037 8 6 1.8703 -2.5156 -0.0079 9 8 0.6840 -2.7839 -0.0144 10 7 2.7850 -3.5054 -0.0046 11 6 2.3505 -4.9044 -0.0093 12 6 3.5765 -5.8194 0.0173 13 7 4.3607 -5.7558 -1.2183 14 6 3.8179 -6.1931 -2.3970 15 1 2.8528 -6.6779 -2.4001 16 6 4.5080 -6.0132 -3.5880 17 7 5.6839 -5.4220 -3.5844 18 14 3.7672 -6.6091 -5.1959 19 1 2.4694 -5.9251 -5.4266 20 1 4.6955 -6.3002 -6.3131 21 1 3.5480 -8.0762 -5.1264 22 6 3.2649 -7.2537 0.4761 23 6 4.5897 -7.2054 1.2589 24 6 4.4238 -5.6769 1.2927 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.4497 1.4060 0.0113 29 1 4.5890 -1.2109 0.0079 30 1 3.7311 -3.2915 0.0009 31 1 1.7346 -5.0965 0.8693 32 1 1.7696 -5.1015 -0.9103 33 1 5.2646 -5.4040 -1.2017 34 1 6.1660 -5.2959 -4.4166 35 1 2.3836 -7.3266 1.1134 36 1 3.2626 -7.9810 -0.3358 37 1 5.4504 -7.5385 0.6788 38 1 4.5342 -7.6726 2.2421 39 1 5.3559 -5.1331 1.1392 40 1 3.8600 -5.3179 2.1537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717149616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = 11.748496 kcal Electronic energy + Delta-G solvation = -21691.841416 eV Core-core repulsion = 18507.025278 eV Total energy + Delta-G solvation = -3184.816138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10942 -40.62747 -39.43122 -35.25280 -35.14660 -32.42228 -32.16978 -31.76049 -28.80898 -27.08085 -26.70495 -25.69577 -23.78956 -22.61776 -21.45749 -20.53356 -19.59203 -19.07338 -18.54575 -17.19197 -16.81986 -16.55386 -16.21328 -15.90318 -15.56555 -15.15972 -15.04709 -14.68451 -14.38504 -14.10862 -13.93152 -13.59506 -13.56342 -13.39915 -13.07083 -12.93744 -12.87517 -12.54684 -12.44048 -12.19644 -11.91961 -11.57757 -11.46522 -10.98343 -10.84216 -10.65992 -9.98575 -9.63683 -9.06740 -8.96206 -7.92162 -5.18591 0.81006 1.44836 1.46951 1.52066 1.57466 2.23589 2.55059 2.63112 2.71740 3.39761 3.76810 3.84439 3.95991 4.00053 4.08126 4.16269 4.26258 4.32938 4.36657 4.66749 4.71911 4.73566 4.86489 4.91256 4.93152 5.01378 5.02892 5.09609 5.14322 5.30431 5.35255 5.44397 5.58175 5.68754 5.75240 5.82038 6.01648 6.32191 6.69799 6.83673 7.37966 7.46770 8.12211 8.36434 9.30299 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.005489 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.945613 B = 5100.280914 C = 5930.317880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.097 3.903 3 N -0.536 5.536 4 H 0.434 0.566 5 C 0.001 3.999 6 C -0.193 4.193 7 C -0.271 4.271 8 C 0.575 3.425 9 O -0.599 6.599 10 N -0.699 5.699 11 C 0.132 3.868 12 C 0.158 3.842 13 N -0.704 5.704 14 C -0.223 4.223 15 H 0.065 0.935 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.958 3.042 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.278 1.278 22 C -0.149 4.149 23 C -0.118 4.118 24 C -0.127 4.127 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.209 0.791 29 H 0.145 0.855 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 12.593 12.398 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 N -0.134 5.134 4 H 0.275 0.725 5 C -0.127 4.127 6 C -0.217 4.217 7 C -0.281 4.281 8 C 0.366 3.634 9 O -0.483 6.483 10 N -0.347 5.347 11 C 0.005 3.995 12 C 0.067 3.933 13 N -0.343 5.343 14 C -0.355 4.355 15 H 0.083 0.917 16 C -0.260 4.260 17 N -0.612 5.612 18 Si 0.788 3.212 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.205 1.205 22 C -0.189 4.189 23 C -0.156 4.156 24 C -0.165 4.165 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.162 0.838 30 H 0.238 0.762 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.033 12.457 12.248 18.181 hybrid contribution 0.405 -0.062 -1.516 1.570 sum -4.628 12.395 10.732 17.037 Atomic orbital electron populations 1.20515 0.86238 1.04414 1.03479 1.20484 0.94423 0.85969 1.01358 1.41535 1.05816 1.08590 1.57412 0.72540 1.22239 0.86560 0.95906 1.07965 1.22253 0.95153 0.95239 1.09024 1.20296 0.95186 0.91535 1.21131 1.17873 0.85010 0.85437 0.75073 1.90638 1.17992 1.85343 1.54324 1.45523 1.09840 1.05643 1.73722 1.21637 0.97583 0.80830 0.99413 1.21120 0.91033 0.94052 0.87140 1.42074 1.14690 1.75063 1.02494 1.19271 1.01517 1.28899 0.85815 0.91729 1.25336 0.97849 1.02602 1.00185 1.69764 1.14993 1.50121 1.26351 0.85451 0.77015 0.78181 0.80567 1.21657 1.22020 1.20460 1.23362 0.98605 0.97343 0.99617 1.22584 0.96924 0.95972 1.00103 1.23086 0.99723 0.97254 0.96419 0.90659 0.90643 0.88443 0.77393 0.83759 0.76175 0.91486 0.95526 0.78999 0.94193 0.88827 0.93323 0.91935 0.89499 0.91553 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 9.87 71.24 0.70 -1.30 16 2 C 0.10 2.52 7.17 41.78 0.30 2.82 16 3 N -0.54 -9.43 5.90 -182.72 -1.08 -10.51 16 4 H 0.43 3.90 8.96 -92.71 -0.83 3.07 16 5 C 0.00 0.02 11.89 83.11 0.99 1.01 16 6 C -0.19 -5.23 10.56 23.62 0.25 -4.98 16 7 C -0.27 -8.91 6.29 -19.04 -0.12 -9.03 16 8 C 0.58 22.83 7.81 86.62 0.68 23.51 16 9 O -0.60 -26.65 14.82 -4.11 -0.06 -26.71 16 10 N -0.70 -26.82 5.42 -466.54 -2.53 -29.34 16 11 C 0.13 5.25 5.08 86.38 0.44 5.68 16 12 C 0.16 6.03 0.80 4.13 0.00 6.03 16 13 N -0.70 -33.87 5.18 -300.98 -1.56 -35.43 16 14 C -0.22 -12.27 9.04 84.04 0.76 -11.51 16 15 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.96 -57.89 13.07 21.65 0.28 -57.61 16 18 Si 0.96 47.39 29.55 68.60 2.03 49.42 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 C -0.15 -5.12 7.29 31.18 0.23 -4.89 16 23 C -0.12 -3.55 8.00 31.18 0.25 -3.30 16 24 C -0.13 -3.82 7.05 31.12 0.22 -3.61 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.14 6.48 -2.38 -0.02 2.13 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.14 3.79 7.69 -2.91 -0.02 3.76 16 30 H 0.40 14.68 7.43 -92.71 -0.69 14.00 16 31 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 32 H 0.03 1.25 7.80 -2.39 -0.02 1.24 16 33 H 0.38 19.33 7.87 -92.70 -0.73 18.60 16 34 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.09 2.74 8.01 -2.38 -0.02 2.72 16 36 H 0.05 1.91 7.87 -2.39 -0.02 1.89 16 37 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.00 8.09 -2.39 -0.02 1.99 16 40 H 0.10 2.62 8.10 -2.39 -0.02 2.60 16 Total: -1.00 -73.03 334.71 1.07 -71.96 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -1.18 Total: 41.16 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.16 Total: -2.95 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -4.88 Total: -132.89 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -73.03 1.07 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717149616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.711 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds