Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38640 * 120.46694 * 2 1 4 4 C 1.38586 * 118.48383 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35399 * 0.02562 * 4 3 2 6 6 N 1.31494 * 120.90077 * 359.73974 * 5 4 3 7 7 C 1.32742 * 121.64443 * 0.52660 * 6 5 4 8 8 C 1.48175 * 119.72597 * 179.74990 * 7 6 5 9 9 O 1.21512 * 120.00098 * 173.93701 * 8 7 6 10 10 N 1.34775 * 119.99528 * 353.94244 * 8 7 6 11 11 C 1.46497 * 119.99540 * 179.72114 * 10 8 7 12 12 C 1.52997 * 109.47075 * 180.27628 * 11 10 8 13 13 C 1.52999 * 109.47386 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47309 * 305.00184 * 13 12 11 15 15 C 1.53000 * 109.47655 * 184.99910 * 13 12 11 16 16 N 1.46497 * 109.47151 * 64.99897 * 13 12 11 17 17 C 1.36939 * 120.00521 * 205.00312 * 16 13 12 18 18 H 1.08007 * 119.99643 * 359.97438 * 17 16 13 19 19 C 1.38808 * 120.00505 * 180.02562 * 17 16 13 20 20 N 1.31617 * 119.99777 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46925 * 59.99862 * 21 19 17 23 23 H 1.48496 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47020 * 299.99468 * 21 19 17 25 25 H 1.09003 * 109.47338 * 263.26434 * 1 2 3 26 26 H 1.09008 * 109.47317 * 23.26271 * 1 2 3 27 27 H 1.08999 * 109.46969 * 143.25935 * 1 2 3 28 28 H 1.07993 * 120.75190 * 0.04394 * 3 2 1 29 29 H 1.07997 * 120.31991 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.55099 * 179.97438 * 5 4 3 31 31 H 0.96999 * 120.00077 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.47671 * 300.27862 * 11 10 8 33 33 H 1.08999 * 109.47346 * 60.27726 * 11 10 8 34 34 H 1.08997 * 109.47219 * 299.99874 * 12 11 10 35 35 H 1.09005 * 109.47356 * 60.00434 * 12 11 10 36 36 H 1.08997 * 109.46986 * 300.00472 * 15 13 12 37 37 H 1.09006 * 109.46873 * 60.00275 * 15 13 12 38 38 H 1.08998 * 109.47328 * 180.02562 * 15 13 12 39 39 H 0.97004 * 119.99982 * 25.00086 * 16 13 12 40 40 H 0.97001 * 120.00170 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0838 -0.0016 6 7 3.5407 -1.2022 0.0030 7 6 2.2133 -1.2003 -0.0015 8 6 1.4767 -2.4860 -0.0016 9 8 0.2663 -2.4928 0.1054 10 7 2.1493 -3.6479 -0.1203 11 6 1.4217 -4.9193 -0.1143 12 6 2.4138 -6.0754 -0.2554 13 6 1.6538 -7.4033 -0.2497 14 1 1.0383 -7.4659 0.6477 15 6 2.6522 -8.5625 -0.2652 16 7 0.7973 -7.4808 -1.4356 17 6 -0.3208 -8.2713 -1.4223 18 1 -0.5709 -8.8381 -0.5376 19 6 -1.1321 -8.3452 -2.5462 20 7 -0.8271 -7.6549 -3.6245 21 14 -2.6569 -9.4242 -2.5283 22 1 -3.5739 -8.9674 -1.4532 23 1 -3.3463 -9.3287 -3.8400 24 1 -2.2629 -10.8338 -2.2772 25 1 -0.3634 -0.1205 1.0206 26 1 -0.3634 0.9442 -0.4059 27 1 -0.3633 -0.8235 -0.6147 28 1 1.6900 2.1415 0.0007 29 1 4.1721 2.0598 -0.0010 30 1 5.3114 -0.1249 -0.0025 31 1 3.1156 -3.6424 -0.2053 32 1 0.8759 -5.0213 0.8238 33 1 0.7190 -4.9398 -0.9473 34 1 2.9594 -5.9735 -1.1934 35 1 3.1164 -6.0550 0.5778 36 1 3.2677 -8.5000 -1.1625 37 1 3.2896 -8.5049 0.6173 38 1 2.1108 -9.5085 -0.2616 39 1 1.0221 -6.9720 -2.2304 40 1 -1.3938 -7.7068 -4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724996819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = 2.005238 kcal Electronic energy + Delta-G solvation = -20840.029414 eV Core-core repulsion = 17654.790778 eV Total energy + Delta-G solvation = -3185.238637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83036 -38.86577 -36.56502 -34.62854 -33.50297 -32.39871 -32.02639 -29.32801 -28.21018 -27.32580 -24.88337 -23.74589 -22.76068 -22.04486 -20.73375 -19.75234 -18.03416 -17.13302 -16.90946 -15.82346 -15.56704 -15.39610 -14.86596 -14.77826 -14.24506 -13.70825 -13.53746 -13.44013 -13.36580 -12.85966 -12.79417 -12.47498 -12.35860 -12.14733 -11.95196 -11.49538 -11.02036 -10.86827 -10.69531 -10.58081 -10.26037 -10.12811 -10.04018 -9.93296 -9.59287 -9.41163 -9.23098 -8.86451 -8.68460 -6.90652 -5.70534 -2.99164 0.49343 0.96318 2.78296 3.25174 3.48826 3.53203 3.53985 3.72470 4.04784 4.50739 4.61173 4.64879 4.68643 4.74116 5.14220 5.31493 5.37796 5.46069 5.51125 5.61423 5.68886 5.73884 5.77945 5.92848 5.96371 6.13167 6.17140 6.22862 6.37443 6.43332 6.45847 6.56682 6.74397 6.77012 6.91386 7.11194 7.45562 7.75591 7.78397 8.36212 8.47857 9.59048 10.16142 10.50860 11.52077 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.003584 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.709700 B = 7810.316965 C = 8638.571656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.088 4.088 4 C -0.150 4.150 5 C 0.087 3.913 6 N -0.455 5.455 7 C 0.077 3.923 8 C 0.563 3.437 9 O -0.525 6.525 10 N -0.707 5.707 11 C 0.120 3.880 12 C -0.133 4.133 13 C 0.175 3.825 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.406 0.594 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.215 17.894 8.505 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.114 4.114 4 C -0.170 4.170 5 C -0.072 4.072 6 N -0.166 5.166 7 C -0.062 4.062 8 C 0.347 3.653 9 O -0.401 6.401 10 N -0.357 5.357 11 C -0.002 4.002 12 C -0.171 4.171 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.223 4.223 16 N -0.366 5.366 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.241 0.759 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.588 16.907 8.612 21.728 hybrid contribution -0.516 0.444 -0.395 0.787 sum 10.072 17.351 8.217 21.680 Atomic orbital electron populations 1.21091 0.88840 1.03523 1.04145 1.21000 0.98594 0.92367 0.95607 1.21566 0.94168 0.98109 0.97562 1.22347 0.95282 0.99808 0.99548 1.22760 1.00427 0.87364 0.96698 1.67541 1.07182 1.31968 1.09944 1.21152 0.89770 0.93945 1.01286 1.17838 0.86662 0.83095 0.77685 1.90766 1.13032 1.86586 1.49758 1.45983 1.11474 1.05888 1.72369 1.21525 0.95069 0.80243 1.03371 1.22060 0.97918 0.95329 1.01819 1.20150 0.90991 0.90401 0.92036 0.93284 1.22423 0.99432 1.01021 0.99472 1.42456 1.26785 1.55116 1.12219 1.19182 1.00131 1.19365 0.98215 0.91275 1.24718 0.99348 1.00557 0.96254 1.69646 1.39883 1.45018 1.03596 0.86295 0.83248 0.80206 0.76605 1.21261 1.21777 1.21388 0.90286 0.92248 0.87900 0.84217 0.84357 0.82146 0.75891 0.91623 0.89507 0.91534 0.91832 0.93519 0.94555 0.92744 0.78280 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.74 36.01 0.31 -1.08 16 2 C -0.07 -0.86 5.93 -104.09 -0.62 -1.48 16 3 C -0.09 -0.77 9.83 -39.30 -0.39 -1.16 16 4 C -0.15 -1.12 10.11 -39.32 -0.40 -1.52 16 5 C 0.09 0.78 11.18 -17.56 -0.20 0.58 16 6 N -0.46 -5.55 9.56 -9.80 -0.09 -5.64 16 7 C 0.08 1.05 6.75 -83.01 -0.56 0.49 16 8 C 0.56 9.20 7.75 -12.18 -0.09 9.10 16 9 O -0.52 -9.95 13.31 5.36 0.07 -9.88 16 10 N -0.71 -10.82 5.54 -61.15 -0.34 -11.15 16 11 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 12 C -0.13 -2.12 4.87 -26.73 -0.13 -2.25 16 13 C 0.17 3.41 2.89 -67.93 -0.20 3.22 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 16 N -0.72 -17.98 4.57 -53.43 -0.24 -18.23 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 21 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.53 8.05 -51.92 -0.42 0.12 16 27 H 0.10 1.50 5.85 -51.93 -0.30 1.19 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.41 5.39 7.82 -40.82 -0.32 5.07 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -32.65 338.11 -7.94 -40.60 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.96 Total: 11.07 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.18 Total: -1.83 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.05 Total: -62.81 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.65 -7.94 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724996819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.601 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds