Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38640 * 120.46694 * 2 1 4 4 C 1.38586 * 118.48383 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35399 * 0.02562 * 4 3 2 6 6 N 1.31494 * 120.90077 * 359.73974 * 5 4 3 7 7 C 1.32742 * 121.64443 * 0.52660 * 6 5 4 8 8 C 1.48175 * 119.72597 * 179.74990 * 7 6 5 9 9 O 1.21512 * 120.00098 * 173.93701 * 8 7 6 10 10 N 1.34775 * 119.99528 * 353.94244 * 8 7 6 11 11 C 1.46497 * 119.99540 * 179.72114 * 10 8 7 12 12 C 1.52997 * 109.47075 * 180.27628 * 11 10 8 13 13 C 1.52999 * 109.47386 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47309 * 305.00184 * 13 12 11 15 15 C 1.53000 * 109.47655 * 184.99910 * 13 12 11 16 16 N 1.46497 * 109.47151 * 64.99897 * 13 12 11 17 17 C 1.36939 * 120.00521 * 205.00312 * 16 13 12 18 18 H 1.08007 * 119.99643 * 359.97438 * 17 16 13 19 19 C 1.38808 * 120.00505 * 180.02562 * 17 16 13 20 20 N 1.31617 * 119.99777 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46925 * 59.99862 * 21 19 17 23 23 H 1.48496 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47020 * 299.99468 * 21 19 17 25 25 H 1.09003 * 109.47338 * 263.26434 * 1 2 3 26 26 H 1.09008 * 109.47317 * 23.26271 * 1 2 3 27 27 H 1.08999 * 109.46969 * 143.25935 * 1 2 3 28 28 H 1.07993 * 120.75190 * 0.04394 * 3 2 1 29 29 H 1.07997 * 120.31991 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.55099 * 179.97438 * 5 4 3 31 31 H 0.96999 * 120.00077 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.47671 * 300.27862 * 11 10 8 33 33 H 1.08999 * 109.47346 * 60.27726 * 11 10 8 34 34 H 1.08997 * 109.47219 * 299.99874 * 12 11 10 35 35 H 1.09005 * 109.47356 * 60.00434 * 12 11 10 36 36 H 1.08997 * 109.46986 * 300.00472 * 15 13 12 37 37 H 1.09006 * 109.46873 * 60.00275 * 15 13 12 38 38 H 1.08998 * 109.47328 * 180.02562 * 15 13 12 39 39 H 0.97004 * 119.99982 * 25.00086 * 16 13 12 40 40 H 0.97001 * 120.00170 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0838 -0.0016 6 7 3.5407 -1.2022 0.0030 7 6 2.2133 -1.2003 -0.0015 8 6 1.4767 -2.4860 -0.0016 9 8 0.2663 -2.4928 0.1054 10 7 2.1493 -3.6479 -0.1203 11 6 1.4217 -4.9193 -0.1143 12 6 2.4138 -6.0754 -0.2554 13 6 1.6538 -7.4033 -0.2497 14 1 1.0383 -7.4659 0.6477 15 6 2.6522 -8.5625 -0.2652 16 7 0.7973 -7.4808 -1.4356 17 6 -0.3208 -8.2713 -1.4223 18 1 -0.5709 -8.8381 -0.5376 19 6 -1.1321 -8.3452 -2.5462 20 7 -0.8271 -7.6549 -3.6245 21 14 -2.6569 -9.4242 -2.5283 22 1 -3.5739 -8.9674 -1.4532 23 1 -3.3463 -9.3287 -3.8400 24 1 -2.2629 -10.8338 -2.2772 25 1 -0.3634 -0.1205 1.0206 26 1 -0.3634 0.9442 -0.4059 27 1 -0.3633 -0.8235 -0.6147 28 1 1.6900 2.1415 0.0007 29 1 4.1721 2.0598 -0.0010 30 1 5.3114 -0.1249 -0.0025 31 1 3.1156 -3.6424 -0.2053 32 1 0.8759 -5.0213 0.8238 33 1 0.7190 -4.9398 -0.9473 34 1 2.9594 -5.9735 -1.1934 35 1 3.1164 -6.0550 0.5778 36 1 3.2677 -8.5000 -1.1625 37 1 3.2896 -8.5049 0.6173 38 1 2.1108 -9.5085 -0.2616 39 1 1.0221 -6.9720 -2.2304 40 1 -1.3938 -7.7068 -4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724996819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -21.069831 kcal Electronic energy + Delta-G solvation = -20841.030025 eV Core-core repulsion = 17654.790778 eV Total energy + Delta-G solvation = -3186.239247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76005 -39.99831 -38.15764 -36.04275 -34.55304 -34.03668 -33.03558 -31.05014 -29.71967 -28.28082 -26.04688 -25.54234 -23.98639 -22.98211 -22.00774 -21.26228 -19.38164 -18.93533 -17.78931 -16.99133 -16.76758 -16.54105 -16.37700 -15.82178 -15.74680 -15.32568 -15.07849 -14.61479 -14.28450 -14.10717 -14.01813 -13.71792 -13.60049 -13.32096 -13.18824 -12.92926 -12.78703 -12.63224 -12.31684 -12.24969 -12.12132 -11.63194 -11.59939 -11.09773 -10.93053 -10.76852 -10.43034 -10.25484 -9.86788 -8.97797 -7.91639 -5.18913 -0.34696 0.24792 1.46152 1.49564 1.55002 1.71613 2.07782 2.57830 2.84388 3.16391 3.42196 3.74525 3.85006 3.90567 3.96697 3.98188 4.05845 4.21735 4.35467 4.51036 4.55901 4.65985 4.73714 4.75554 4.77473 4.87499 5.00670 5.09005 5.10200 5.16055 5.19155 5.31905 5.38719 5.47675 5.54146 5.61127 5.69788 6.30842 6.41340 6.82360 7.15649 7.36684 8.14218 8.36097 9.31819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.003584 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.709700 B = 7810.316965 C = 8638.571656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.082 3.918 6 N -0.475 5.475 7 C 0.044 3.956 8 C 0.554 3.446 9 O -0.564 6.564 10 N -0.699 5.699 11 C 0.133 3.867 12 C -0.116 4.116 13 C 0.166 3.834 14 H 0.044 0.956 15 C -0.153 4.153 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.173 0.827 29 H 0.183 0.817 30 H 0.195 0.805 31 H 0.417 0.583 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.371 0.629 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.561 19.723 9.813 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.111 4.111 4 C -0.148 4.148 5 C -0.078 4.078 6 N -0.186 5.186 7 C -0.093 4.093 8 C 0.340 3.660 9 O -0.444 6.444 10 N -0.350 5.350 11 C 0.009 3.991 12 C -0.154 4.154 13 C 0.057 3.943 14 H 0.062 0.938 15 C -0.213 4.213 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.798 3.202 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.212 0.788 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.978 18.717 9.971 24.863 hybrid contribution -1.112 0.014 -0.722 1.326 sum 11.867 18.731 9.249 24.025 Atomic orbital electron populations 1.20966 0.89543 1.03460 1.03149 1.21141 0.98462 0.93189 0.96405 1.21968 0.94981 0.97928 0.96239 1.22859 0.94921 1.00922 0.96116 1.23477 1.01949 0.87113 0.95303 1.67470 1.06357 1.33964 1.10802 1.20769 0.90723 0.92850 1.04914 1.18459 0.86532 0.84342 0.76623 1.90742 1.14799 1.87363 1.51452 1.45828 1.11846 1.05055 1.72253 1.21184 0.94995 0.82057 1.00860 1.21915 0.97458 0.92481 1.03583 1.20437 0.91102 0.93075 0.89671 0.93768 1.22259 0.98998 0.98737 1.01283 1.42656 1.27041 1.54511 1.13429 1.19579 1.00625 1.18513 0.97984 0.90759 1.25506 1.02587 1.02626 0.96279 1.69811 1.41091 1.47148 1.04129 0.85281 0.79826 0.78934 0.76178 1.20752 1.22371 1.20264 0.90995 0.89414 0.91561 0.80984 0.79924 0.78781 0.74546 0.92592 0.94123 0.91238 0.87901 0.93694 0.90606 0.94676 0.79705 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 8.74 71.24 0.62 -2.14 16 2 C -0.09 -2.06 5.93 -19.52 -0.12 -2.17 16 3 C -0.09 -1.21 9.83 22.45 0.22 -0.99 16 4 C -0.13 -1.34 10.11 22.44 0.23 -1.11 16 5 C 0.08 1.18 11.18 84.83 0.95 2.13 16 6 N -0.47 -10.92 9.56 -184.91 -1.77 -12.68 16 7 C 0.04 1.21 6.75 41.90 0.28 1.49 16 8 C 0.55 19.14 7.75 86.88 0.67 19.81 16 9 O -0.56 -23.21 13.31 -3.75 -0.05 -23.26 16 10 N -0.70 -22.11 5.54 -465.67 -2.58 -24.69 16 11 C 0.13 4.80 5.56 86.38 0.48 5.28 16 12 C -0.12 -3.63 4.87 30.59 0.15 -3.48 16 13 C 0.17 6.42 2.89 44.99 0.13 6.55 16 14 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 15 C -0.15 -5.21 9.49 71.98 0.68 -4.52 16 16 N -0.74 -37.50 4.57 -322.95 -1.48 -38.98 16 17 C -0.23 -13.35 9.93 84.03 0.83 -12.51 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 20 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 21 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 22 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.51 8.05 -2.38 -0.02 1.49 16 27 H 0.07 2.11 5.85 -2.39 -0.01 2.09 16 28 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 30 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 31 H 0.42 11.04 7.82 -92.71 -0.72 10.31 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.46 8.14 -2.38 -0.02 2.45 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.37 20.51 7.80 -92.71 -0.72 19.78 16 40 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.66 338.11 1.64 -74.02 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.40 Total: 32.65 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.60 Total: 4.19 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -5.54 Total: -137.46 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -75.66 1.64 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724996819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds