Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.50398 * 2 1 4 4 N 1.31800 * 120.89670 * 180.28972 * 3 2 1 5 5 C 1.31820 * 122.04962 * 359.73421 * 4 3 2 6 6 C 1.38123 * 120.90014 * 0.02562 * 5 4 3 7 7 C 1.39801 * 120.50063 * 179.76706 * 2 1 3 8 8 C 1.48152 * 120.92106 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00357 * 49.79663 * 8 7 2 10 10 N 1.34780 * 119.99556 * 229.79723 * 8 7 2 11 11 C 1.46494 * 120.00243 * 355.68158 * 10 8 7 12 12 C 1.46503 * 119.99879 * 175.67527 * 10 8 7 13 13 C 1.53004 * 109.46885 * 90.00238 * 12 10 8 14 14 H 1.09006 * 109.46792 * 295.00404 * 13 12 10 15 15 C 1.52996 * 109.47207 * 175.00236 * 13 12 10 16 16 N 1.46501 * 109.46960 * 54.99854 * 13 12 10 17 17 C 1.36936 * 119.99960 * 204.99935 * 16 13 12 18 18 H 1.08003 * 120.00040 * 0.02562 * 17 16 13 19 19 C 1.38813 * 119.99742 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00229 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99571 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47378 * 90.00157 * 21 19 17 23 23 H 1.48505 * 109.46905 * 210.00188 * 21 19 17 24 24 H 1.48496 * 109.47187 * 329.99602 * 21 19 17 25 25 H 1.09004 * 109.47093 * 264.54057 * 1 2 3 26 26 H 1.08999 * 109.47082 * 24.54529 * 1 2 3 27 27 H 1.09003 * 109.47248 * 144.54554 * 1 2 3 28 28 H 1.08001 * 119.54677 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.55218 * 180.02562 * 5 4 3 30 30 H 1.07997 * 120.50431 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46908 * 275.20503 * 11 10 8 32 32 H 1.09000 * 109.47444 * 35.20340 * 11 10 8 33 33 H 1.09000 * 109.47398 * 155.19829 * 11 10 8 34 34 H 1.09000 * 109.46932 * 330.00454 * 12 10 8 35 35 H 1.08994 * 109.47326 * 209.99765 * 12 10 8 36 36 H 1.09001 * 109.46963 * 180.02562 * 15 13 12 37 37 H 1.09006 * 109.46923 * 300.00080 * 15 13 12 38 38 H 1.08992 * 109.47205 * 60.00000 * 15 13 12 39 39 H 0.96998 * 119.99702 * 25.00261 * 16 13 12 40 40 H 0.96997 * 119.99648 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0065 6 6 3.6137 -1.1474 -0.0018 7 6 2.2165 -1.2045 0.0049 8 6 1.5078 -2.5056 0.0096 9 8 0.6210 -2.7173 -0.7936 10 7 1.8468 -3.4543 0.9049 11 6 2.9776 -3.2364 1.8104 12 6 1.0844 -4.7034 0.9726 13 6 1.7083 -5.7335 0.0288 14 1 1.6085 -5.3900 -1.0009 15 6 0.9902 -7.0747 0.1910 16 7 3.1274 -5.8969 0.3537 17 6 4.0034 -6.3326 -0.6044 18 1 3.6481 -6.5554 -1.5997 19 6 5.3480 -6.4879 -0.2964 20 7 5.7809 -6.2169 0.9166 21 14 6.5430 -7.0817 -1.6037 22 1 7.1003 -5.9138 -2.3321 23 1 7.6477 -7.8359 -0.9586 24 1 5.8311 -7.9675 -2.5595 25 1 -0.3633 -0.0978 1.0230 26 1 -0.3633 0.9348 -0.4269 27 1 -0.3634 -0.8371 -0.5961 28 1 1.6691 2.1263 -0.0004 29 1 5.3121 0.1415 -0.0108 30 1 4.1994 -2.0548 -0.0020 31 1 3.9034 -3.5207 1.3105 32 1 3.0232 -2.1833 2.0879 33 1 2.8475 -3.8428 2.7067 34 1 0.0527 -4.5160 0.6750 35 1 1.1044 -5.0865 1.9928 36 1 1.4350 -7.8086 -0.4810 37 1 1.0900 -7.4180 1.2208 38 1 -0.0656 -6.9530 -0.0507 39 1 3.4465 -5.6965 1.2475 40 1 6.7205 -6.3251 1.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725487678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = 13.975375 kcal Electronic energy + Delta-G solvation = -22093.731422 eV Core-core repulsion = 18909.011849 eV Total energy + Delta-G solvation = -3184.719573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70690 -39.00287 -36.39870 -34.40932 -33.47508 -32.39457 -31.62762 -28.87180 -27.55798 -26.88864 -25.97832 -24.05605 -23.40048 -22.21344 -20.36575 -19.37850 -17.41434 -17.23674 -16.66984 -16.06414 -15.44215 -15.00259 -14.92611 -14.38387 -14.20008 -13.79677 -13.47866 -13.30491 -13.23404 -12.79866 -12.71058 -12.29278 -12.24210 -12.15034 -11.89461 -11.50802 -11.50096 -11.26691 -10.88688 -10.74453 -10.40540 -10.10693 -10.09986 -9.70915 -9.62250 -9.25142 -8.97344 -8.93437 -8.24604 -6.98999 -5.82084 -3.09033 0.91960 1.09069 2.90495 3.23469 3.40155 3.46752 3.47657 3.77867 4.40615 4.52999 4.56375 4.77888 4.84323 4.99205 5.32244 5.44155 5.48007 5.50897 5.54875 5.60397 5.62731 5.71667 5.79079 5.84687 5.88937 6.06187 6.07235 6.23868 6.25881 6.29590 6.35553 6.58503 6.63307 6.75445 6.83437 7.10176 7.61447 7.68787 7.90726 8.34264 8.37436 9.48995 10.04454 10.41029 11.40604 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.005917 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.963797 B = 4731.266218 C = 5793.842220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C 0.089 3.911 4 N -0.474 5.474 5 C 0.087 3.913 6 C -0.131 4.131 7 C -0.078 4.078 8 C 0.561 3.439 9 O -0.536 6.536 10 N -0.584 5.584 11 C 0.076 3.924 12 C 0.111 3.889 13 C 0.154 3.846 14 H 0.053 0.947 15 C -0.162 4.162 16 N -0.720 5.720 17 C -0.231 4.231 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.935 5.935 21 Si 0.903 3.097 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.382 0.618 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 11.242 3.073 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 C -0.069 4.069 4 N -0.183 5.183 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.089 4.089 8 C 0.348 3.652 9 O -0.415 6.415 10 N -0.314 5.314 11 C -0.066 4.066 12 C -0.012 4.012 13 C 0.043 3.957 14 H 0.071 0.929 15 C -0.223 4.223 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.585 5.585 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.209 1.209 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.216 0.784 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.391 11.836 2.520 14.726 hybrid contribution 0.679 -1.273 -0.364 1.488 sum -7.712 10.564 2.156 13.255 Atomic orbital electron populations 1.20939 0.89824 1.04398 1.03048 1.20947 0.97841 0.92594 0.98253 1.22604 0.89883 0.97048 0.97317 1.67519 1.08200 1.31924 1.10623 1.22724 1.00544 0.87183 0.96427 1.22621 0.93906 1.00869 0.97693 1.20252 0.94152 0.93886 1.00626 1.18118 0.82766 0.83279 0.80998 1.90714 1.32097 1.80567 1.38077 1.47533 1.31894 1.16557 1.35448 1.22059 0.90127 1.00691 0.93766 1.21940 0.95322 0.83283 1.00639 1.20656 0.86060 0.91759 0.97212 0.92932 1.22365 0.98370 1.00113 1.01409 1.42387 1.01292 1.79975 1.12574 1.19234 0.88733 1.35878 0.92368 0.91419 1.24653 0.96910 1.02709 0.96584 1.69629 1.14662 1.55730 1.18435 0.86248 0.81130 0.78333 0.80866 1.21835 1.21829 1.20881 0.91076 0.91155 0.88863 0.82553 0.82173 0.83125 0.89778 0.92337 0.90923 0.90124 0.90710 0.92523 0.93469 0.94295 0.78411 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.58 36.00 0.34 -1.07 16 2 C -0.09 -1.24 5.93 -104.07 -0.62 -1.86 16 3 C 0.09 1.09 10.84 -17.59 -0.19 0.90 16 4 N -0.47 -6.46 10.33 -13.31 -0.14 -6.60 16 5 C 0.09 1.15 11.17 -17.60 -0.20 0.96 16 6 C -0.13 -1.90 7.95 -39.02 -0.31 -2.21 16 7 C -0.08 -1.19 4.86 -104.64 -0.51 -1.70 16 8 C 0.56 9.75 6.80 -12.19 -0.08 9.67 16 9 O -0.54 -10.56 14.64 5.36 0.08 -10.48 16 10 N -0.58 -9.67 2.73 -182.58 -0.50 -10.16 16 11 C 0.08 1.16 7.73 59.84 0.46 1.62 16 12 C 0.11 1.83 5.04 -4.04 -0.02 1.81 16 13 C 0.15 3.04 3.20 -67.93 -0.22 2.82 16 14 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 15 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 16 N -0.72 -16.83 4.47 -53.42 -0.24 -17.07 16 17 C -0.23 -6.16 9.93 -15.06 -0.15 -6.31 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.94 -26.37 13.06 55.49 0.72 -25.65 16 21 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 27 H 0.09 1.28 5.91 -51.93 -0.31 0.98 16 28 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.15 2.31 6.52 -52.49 -0.34 1.97 16 31 H 0.08 1.52 6.73 -51.93 -0.35 1.17 16 32 H 0.06 0.77 6.34 -51.93 -0.33 0.44 16 33 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 34 H 0.08 1.27 7.48 -51.93 -0.39 0.88 16 35 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.38 9.15 6.38 -40.82 -0.26 8.89 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -30.70 330.15 -7.06 -37.76 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.71 Total: 8.65 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.23 Total: 1.65 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.15 Total: -59.48 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.70 -7.06 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725487678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.738 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds