Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.50398 * 2 1 4 4 N 1.31800 * 120.89670 * 180.28972 * 3 2 1 5 5 C 1.31820 * 122.04962 * 359.73421 * 4 3 2 6 6 C 1.38123 * 120.90014 * 0.02562 * 5 4 3 7 7 C 1.39801 * 120.50063 * 179.76706 * 2 1 3 8 8 C 1.48152 * 120.92106 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00357 * 49.79663 * 8 7 2 10 10 N 1.34780 * 119.99556 * 229.79723 * 8 7 2 11 11 C 1.46494 * 120.00243 * 355.68158 * 10 8 7 12 12 C 1.46503 * 119.99879 * 175.67527 * 10 8 7 13 13 C 1.53004 * 109.46885 * 90.00238 * 12 10 8 14 14 H 1.09006 * 109.46792 * 295.00404 * 13 12 10 15 15 C 1.52996 * 109.47207 * 175.00236 * 13 12 10 16 16 N 1.46501 * 109.46960 * 54.99854 * 13 12 10 17 17 C 1.36936 * 119.99960 * 204.99935 * 16 13 12 18 18 H 1.08003 * 120.00040 * 0.02562 * 17 16 13 19 19 C 1.38813 * 119.99742 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00229 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99571 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47378 * 90.00157 * 21 19 17 23 23 H 1.48505 * 109.46905 * 210.00188 * 21 19 17 24 24 H 1.48496 * 109.47187 * 329.99602 * 21 19 17 25 25 H 1.09004 * 109.47093 * 264.54057 * 1 2 3 26 26 H 1.08999 * 109.47082 * 24.54529 * 1 2 3 27 27 H 1.09003 * 109.47248 * 144.54554 * 1 2 3 28 28 H 1.08001 * 119.54677 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.55218 * 180.02562 * 5 4 3 30 30 H 1.07997 * 120.50431 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46908 * 275.20503 * 11 10 8 32 32 H 1.09000 * 109.47444 * 35.20340 * 11 10 8 33 33 H 1.09000 * 109.47398 * 155.19829 * 11 10 8 34 34 H 1.09000 * 109.46932 * 330.00454 * 12 10 8 35 35 H 1.08994 * 109.47326 * 209.99765 * 12 10 8 36 36 H 1.09001 * 109.46963 * 180.02562 * 15 13 12 37 37 H 1.09006 * 109.46923 * 300.00080 * 15 13 12 38 38 H 1.08992 * 109.47205 * 60.00000 * 15 13 12 39 39 H 0.96998 * 119.99702 * 25.00261 * 16 13 12 40 40 H 0.96997 * 119.99648 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0065 6 6 3.6137 -1.1474 -0.0018 7 6 2.2165 -1.2045 0.0049 8 6 1.5078 -2.5056 0.0096 9 8 0.6210 -2.7173 -0.7936 10 7 1.8468 -3.4543 0.9049 11 6 2.9776 -3.2364 1.8104 12 6 1.0844 -4.7034 0.9726 13 6 1.7083 -5.7335 0.0288 14 1 1.6085 -5.3900 -1.0009 15 6 0.9902 -7.0747 0.1910 16 7 3.1274 -5.8969 0.3537 17 6 4.0034 -6.3326 -0.6044 18 1 3.6481 -6.5554 -1.5997 19 6 5.3480 -6.4879 -0.2964 20 7 5.7809 -6.2169 0.9166 21 14 6.5430 -7.0817 -1.6037 22 1 7.1003 -5.9138 -2.3321 23 1 7.6477 -7.8359 -0.9586 24 1 5.8311 -7.9675 -2.5595 25 1 -0.3633 -0.0978 1.0230 26 1 -0.3633 0.9348 -0.4269 27 1 -0.3634 -0.8371 -0.5961 28 1 1.6691 2.1263 -0.0004 29 1 5.3121 0.1415 -0.0108 30 1 4.1994 -2.0548 -0.0020 31 1 3.9034 -3.5207 1.3105 32 1 3.0232 -2.1833 2.0879 33 1 2.8475 -3.8428 2.7067 34 1 0.0527 -4.5160 0.6750 35 1 1.1044 -5.0865 1.9928 36 1 1.4350 -7.8086 -0.4810 37 1 1.0900 -7.4180 1.2208 38 1 -0.0656 -6.9530 -0.0507 39 1 3.4465 -5.6965 1.2475 40 1 6.7205 -6.3251 1.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725487678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = -5.153270 kcal Electronic energy + Delta-G solvation = -22094.560902 eV Core-core repulsion = 18909.011849 eV Total energy + Delta-G solvation = -3185.549053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87150 -40.24518 -37.94993 -35.96894 -34.56124 -34.04435 -32.92775 -30.68204 -28.60640 -28.20627 -27.23935 -25.80409 -24.78637 -23.28913 -21.86604 -20.71233 -19.28442 -18.58492 -17.84109 -17.36239 -16.78668 -16.48903 -16.22462 -15.89075 -15.52613 -15.20867 -14.98160 -14.67302 -14.34402 -14.12747 -13.82781 -13.70436 -13.65781 -13.35243 -13.16524 -13.07243 -12.82427 -12.71054 -12.55095 -12.49416 -12.19941 -11.88770 -11.65277 -11.38994 -10.97410 -10.76005 -10.39188 -9.93592 -9.66216 -8.94409 -7.92408 -5.17589 -0.20395 0.06789 1.45214 1.46829 1.53762 1.59603 1.96262 2.56047 2.72637 3.30170 3.41439 3.48760 3.80620 3.81389 3.88618 3.97434 4.10692 4.21270 4.36070 4.41604 4.55742 4.58649 4.64806 4.70146 4.72709 4.76641 4.81833 4.89387 5.02039 5.08504 5.10870 5.25176 5.29624 5.36204 5.52911 5.62515 5.63280 6.28082 6.31925 6.88478 7.00340 7.38545 8.10848 8.40155 9.29774 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.005917 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.963797 B = 4731.266218 C = 5793.842220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C 0.097 3.903 4 N -0.484 5.484 5 C 0.089 3.911 6 C -0.140 4.140 7 C -0.098 4.098 8 C 0.557 3.443 9 O -0.566 6.566 10 N -0.586 5.586 11 C 0.086 3.914 12 C 0.116 3.884 13 C 0.152 3.848 14 H 0.021 0.979 15 C -0.152 4.152 16 N -0.723 5.723 17 C -0.234 4.234 18 H 0.058 0.942 19 C -0.060 4.060 20 N -0.957 5.957 21 Si 0.956 3.044 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.280 1.280 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.379 0.621 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 12.600 3.614 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 C -0.061 4.061 4 N -0.193 5.193 5 C -0.067 4.067 6 C -0.160 4.160 7 C -0.109 4.109 8 C 0.345 3.655 9 O -0.446 6.446 10 N -0.315 5.315 11 C -0.057 4.057 12 C -0.007 4.007 13 C 0.042 3.958 14 H 0.039 0.961 15 C -0.212 4.212 16 N -0.365 5.365 17 C -0.366 4.366 18 H 0.076 0.924 19 C -0.253 4.253 20 N -0.607 5.607 21 Si 0.787 3.213 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.206 1.206 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.211 0.789 29 H 0.198 0.802 30 H 0.152 0.848 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.213 0.787 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.253 13.189 3.061 16.400 hybrid contribution 0.872 -1.648 -0.562 1.948 sum -8.381 11.541 2.499 14.480 Atomic orbital electron populations 1.20939 0.88417 1.04831 1.03570 1.21227 0.98904 0.92108 0.97544 1.23176 0.89529 0.97991 0.95381 1.67620 1.08973 1.31772 1.10904 1.23003 1.01569 0.86519 0.95613 1.22498 0.93638 1.00928 0.98978 1.20251 0.94492 0.93683 1.02440 1.18511 0.82415 0.84102 0.80437 1.90689 1.33510 1.81304 1.39127 1.47639 1.31990 1.16417 1.35475 1.21977 0.88215 1.02145 0.93355 1.21903 0.95383 0.82435 1.00979 1.20775 0.84720 0.93867 0.96423 0.96066 1.22207 0.99637 0.97912 1.01464 1.42416 1.02510 1.79796 1.11784 1.19397 0.89517 1.35102 0.92592 0.92411 1.25227 0.98169 1.03707 0.98241 1.69735 1.14551 1.56863 1.19587 0.85402 0.79248 0.77718 0.78955 1.21831 1.21973 1.20551 0.89805 0.88188 0.91504 0.78941 0.80180 0.84793 0.92981 0.90379 0.89655 0.89097 0.88340 0.94653 0.92514 0.91350 0.78748 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.58 71.23 0.68 -1.80 16 2 C -0.10 -2.36 5.93 -19.50 -0.12 -2.47 16 3 C 0.10 2.10 10.84 84.68 0.92 3.01 16 4 N -0.48 -12.14 10.33 -196.01 -2.03 -14.16 16 5 C 0.09 2.24 11.17 84.67 0.95 3.18 16 6 C -0.14 -4.08 7.95 22.63 0.18 -3.90 16 7 C -0.10 -2.95 4.86 -19.88 -0.10 -3.05 16 8 C 0.56 19.45 6.80 86.88 0.59 20.05 16 9 O -0.57 -22.58 14.64 -3.74 -0.05 -22.64 16 10 N -0.59 -19.29 2.73 -849.86 -2.32 -21.61 16 11 C 0.09 2.58 7.73 127.77 0.99 3.57 16 12 C 0.12 3.71 5.04 86.38 0.44 4.15 16 13 C 0.15 6.00 3.20 44.99 0.14 6.15 16 14 H 0.02 0.97 8.08 -2.38 -0.02 0.95 16 15 C -0.15 -5.24 9.49 71.98 0.68 -4.56 16 16 N -0.72 -34.23 4.47 -322.93 -1.44 -35.67 16 17 C -0.23 -12.70 9.93 84.03 0.83 -11.87 16 18 H 0.06 3.19 7.83 -2.91 -0.02 3.17 16 19 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 20 N -0.96 -54.50 13.06 21.65 0.28 -54.22 16 21 Si 0.96 45.55 29.55 68.60 2.03 47.58 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.43 8.06 -2.39 -0.02 1.41 16 27 H 0.07 1.79 5.91 -2.39 -0.01 1.77 16 28 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.13 4.31 6.52 -2.91 -0.02 4.29 16 31 H 0.05 1.93 6.73 -2.39 -0.02 1.92 16 32 H 0.08 2.02 6.34 -2.39 -0.02 2.01 16 33 H 0.08 2.32 7.83 -2.39 -0.02 2.30 16 34 H 0.09 2.75 7.48 -2.39 -0.02 2.74 16 35 H 0.10 2.70 7.86 -2.39 -0.02 2.68 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.38 18.33 6.38 -92.71 -0.59 17.74 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.29 330.15 3.58 -62.72 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.45 Total: 28.40 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.66 Total: 9.60 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.50 Total: -125.67 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.29 3.58 -62.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725487678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.563 kcal (2) G-P(sol) polarization free energy of solvation -66.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds