Wall clock time and date at job start Mon Mar 30 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38397 * 120.85731 * 2 1 4 4 C 1.38313 * 119.30620 * 179.97438 * 3 2 1 5 5 N 1.31957 * 121.08237 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.87707 * 359.97438 * 5 4 3 7 7 C 1.39565 * 120.56447 * 359.73830 * 6 5 4 8 8 C 1.47840 * 120.55921 * 180.28331 * 7 6 5 9 9 O 1.21548 * 120.00298 * 186.50297 * 8 7 6 10 10 N 1.34776 * 119.99700 * 6.50358 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47266 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47232 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47164 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99966 * 89.99821 * 14 13 12 16 16 C 1.36933 * 120.00060 * 269.99633 * 14 13 12 17 17 H 1.07998 * 119.99702 * 23.10747 * 16 14 13 18 18 C 1.38806 * 120.00104 * 203.11282 * 16 14 13 19 19 N 1.31626 * 119.99985 * 11.22978 * 18 16 14 20 20 Si 1.86801 * 120.00121 * 191.23311 * 18 16 14 21 21 H 1.48493 * 109.47431 * 59.99544 * 20 18 16 22 22 H 1.48500 * 109.47133 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46993 * 299.99586 * 20 18 16 24 24 H 1.09004 * 109.47285 * 96.33493 * 1 2 3 25 25 H 1.09002 * 109.46758 * 336.34019 * 1 2 3 26 26 H 1.08994 * 109.47145 * 216.33886 * 1 2 3 27 27 H 1.08002 * 120.34680 * 359.95771 * 3 2 1 28 28 H 1.07996 * 119.45915 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.71612 * 180.02562 * 6 5 4 30 30 H 0.96996 * 120.00438 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.46786 * 300.00271 * 11 10 8 32 32 H 1.08994 * 109.47212 * 59.99953 * 11 10 8 33 33 H 1.09003 * 109.47131 * 299.99682 * 12 11 10 34 34 H 1.08994 * 109.47353 * 59.99661 * 12 11 10 35 35 H 1.09003 * 109.46678 * 299.99806 * 13 12 11 36 36 H 1.08994 * 109.47354 * 59.99508 * 13 12 11 37 37 H 1.09007 * 109.47029 * 94.88690 * 15 14 13 38 38 H 1.08989 * 109.47142 * 214.88867 * 15 14 13 39 39 H 1.09000 * 109.47111 * 334.88744 * 15 14 13 40 40 H 0.97000 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1537 0.0005 7 6 2.2249 -1.2017 0.0060 8 6 1.5175 -2.4999 0.0123 9 8 0.3079 -2.5335 -0.1022 10 7 2.2140 -3.6461 0.1450 11 6 1.5131 -4.9326 0.1507 12 6 2.5281 -6.0657 0.3141 13 6 1.7962 -7.4092 0.3194 14 7 2.7682 -8.4942 0.4752 15 6 3.1320 -8.9651 1.8140 16 6 3.3367 -9.0682 -0.6304 17 1 3.3803 -8.5213 -1.5607 18 6 3.8567 -10.3530 -0.5556 19 7 3.6117 -11.1018 0.4989 20 14 4.9042 -11.0194 -1.9513 21 1 6.1007 -10.1578 -2.1273 22 1 5.3337 -12.4043 -1.6303 23 1 4.1104 -11.0263 -3.2063 24 1 -0.3634 -0.1134 -1.0214 25 1 -0.3633 0.9413 0.4124 26 1 -0.3633 -0.8278 0.6089 27 1 1.6966 2.1345 -0.0007 28 1 4.1558 2.0762 0.0001 29 1 4.1871 -2.0726 0.0010 30 1 3.1793 -3.6194 0.2360 31 1 0.8052 -4.9570 0.9793 32 1 0.9762 -5.0580 -0.7895 33 1 3.2362 -6.0414 -0.5143 34 1 3.0646 -5.9401 1.2545 35 1 1.0878 -7.4338 1.1475 36 1 1.2600 -7.5346 -0.6212 37 1 2.5169 -9.8262 2.0758 38 1 4.1832 -9.2528 1.8247 39 1 2.9663 -8.1668 2.5374 40 1 3.9755 -11.9995 0.5513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731233597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:05 Heat of formation + Delta-G solvation = 16.016287 kcal Electronic energy + Delta-G solvation = -20568.270037 eV Core-core repulsion = 17383.638965 eV Total energy + Delta-G solvation = -3184.631072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95870 -39.10534 -36.35384 -35.03134 -33.93473 -32.50766 -31.49653 -29.87894 -28.15088 -26.00810 -25.55282 -24.36528 -22.67339 -21.77014 -21.00886 -20.14056 -17.88203 -16.98948 -16.68520 -16.54422 -15.75581 -15.49572 -15.11596 -14.71044 -14.67823 -13.87717 -13.82200 -13.31151 -13.09565 -12.98098 -12.94336 -12.85923 -12.57355 -12.23319 -11.71811 -11.46097 -11.02203 -10.79681 -10.78410 -10.50411 -10.27282 -10.18662 -9.86596 -9.86114 -9.81877 -9.57820 -9.54790 -9.02330 -8.54255 -6.74189 -5.71594 -3.19317 0.35922 0.86246 2.70253 3.06171 3.38930 3.44161 3.44959 3.54524 3.98148 4.34452 4.37477 4.49659 4.53764 4.70721 5.04843 5.15937 5.21708 5.32844 5.41663 5.43725 5.48702 5.52292 5.77283 5.83118 5.86785 6.03842 6.07849 6.16241 6.28196 6.39633 6.49860 6.74165 6.75337 6.92432 7.39146 7.40876 7.53243 7.73938 7.80934 8.08458 8.40901 9.24777 9.87956 10.36891 11.33198 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.002964 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.161088 B = 9443.128590 C = 9898.325004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.186 4.186 4 C 0.121 3.879 5 N -0.493 5.493 6 C 0.139 3.861 7 C -0.192 4.192 8 C 0.559 3.441 9 O -0.533 6.533 10 N -0.719 5.719 11 C 0.121 3.879 12 C -0.152 4.152 13 C 0.156 3.844 14 N -0.603 5.603 15 C 0.163 3.837 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.909 5.909 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.399 0.601 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.041 0.959 39 H -0.004 1.004 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 23.619 0.728 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 C -0.206 4.206 4 C -0.035 4.035 5 N -0.202 5.202 6 C -0.019 4.019 7 C -0.197 4.197 8 C 0.345 3.655 9 O -0.412 6.412 10 N -0.370 5.370 11 C -0.003 4.003 12 C -0.193 4.193 13 C 0.027 3.973 14 N -0.326 5.326 15 C 0.018 3.982 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.159 0.841 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.234 0.766 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.545 23.352 0.704 23.501 hybrid contribution 0.343 -0.396 -0.698 0.873 sum -2.202 22.956 0.006 23.062 Atomic orbital electron populations 1.21106 0.89040 1.03597 1.04235 1.20525 0.97629 0.91333 0.89550 1.22089 0.95576 0.98697 1.04218 1.22984 0.91786 0.96463 0.92222 1.67718 1.40839 0.98297 1.13302 1.23038 0.90456 0.96699 0.91750 1.20952 0.95247 0.94557 1.08952 1.18018 0.86992 0.83488 0.76985 1.90728 1.13530 1.87095 1.49799 1.46095 1.11054 1.06334 1.73557 1.21514 0.95711 0.80864 1.02175 1.22559 0.98675 0.95829 1.02229 1.20586 0.90874 0.86413 0.99383 1.43887 1.47051 1.38444 1.03215 1.20798 0.99813 0.94277 0.83288 1.19147 1.32698 0.95855 0.90919 0.91475 1.25050 1.01215 0.95772 0.97646 1.70060 1.47126 1.08909 1.29327 0.86323 0.80465 0.77892 0.81765 1.21091 1.21631 1.20920 0.89926 0.91842 0.88157 0.84119 0.82254 0.82286 0.76563 0.91510 0.91339 0.91466 0.92136 0.94387 0.93258 0.95152 0.93988 0.98512 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.85 36.00 0.32 -0.84 16 2 C 0.02 0.18 5.95 -103.91 -0.62 -0.44 16 3 C -0.19 -1.46 9.78 -39.50 -0.39 -1.84 16 4 C 0.12 1.00 11.17 -17.47 -0.20 0.80 16 5 N -0.49 -5.20 10.35 -12.91 -0.13 -5.33 16 6 C 0.14 1.43 10.70 -17.13 -0.18 1.24 16 7 C -0.19 -2.15 5.89 -104.82 -0.62 -2.77 16 8 C 0.56 7.30 7.72 -12.33 -0.10 7.20 16 9 O -0.53 -8.30 13.51 5.32 0.07 -8.23 16 10 N -0.72 -8.72 5.51 -61.25 -0.34 -9.05 16 11 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 12 C -0.15 -2.43 5.65 -26.73 -0.15 -2.58 16 13 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 14 N -0.60 -15.05 2.92 -181.12 -0.53 -15.58 16 15 C 0.16 4.01 8.97 59.85 0.54 4.54 16 16 C -0.26 -7.01 9.66 -15.06 -0.15 -7.16 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 19 N -0.91 -26.60 10.62 55.49 0.59 -26.01 16 20 Si 0.91 21.80 29.57 -169.99 -5.03 16.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 26 H 0.10 1.15 5.94 -51.93 -0.31 0.84 16 27 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 28 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.16 1.30 6.48 -52.49 -0.34 0.96 16 30 H 0.40 3.97 6.58 -40.82 -0.27 3.71 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 37 H 0.03 0.81 7.36 -51.93 -0.38 0.43 16 38 H 0.04 1.10 7.28 -51.94 -0.38 0.72 16 39 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -32.41 333.44 -7.87 -40.28 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.86 Total: -0.71 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.67 Total: 2.83 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.41 Total: -55.97 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.41 -7.87 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731233597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.295 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds