Wall clock time and date at job start Mon Mar 30 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38397 * 120.85731 * 2 1 4 4 C 1.38313 * 119.30620 * 179.97438 * 3 2 1 5 5 N 1.31957 * 121.08237 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.87707 * 359.97438 * 5 4 3 7 7 C 1.39565 * 120.56447 * 359.73830 * 6 5 4 8 8 C 1.47840 * 120.55921 * 180.28331 * 7 6 5 9 9 O 1.21548 * 120.00298 * 186.50297 * 8 7 6 10 10 N 1.34776 * 119.99700 * 6.50358 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47266 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47232 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47164 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99966 * 89.99821 * 14 13 12 16 16 C 1.36933 * 120.00060 * 269.99633 * 14 13 12 17 17 H 1.07998 * 119.99702 * 23.10747 * 16 14 13 18 18 C 1.38806 * 120.00104 * 203.11282 * 16 14 13 19 19 N 1.31626 * 119.99985 * 11.22978 * 18 16 14 20 20 Si 1.86801 * 120.00121 * 191.23311 * 18 16 14 21 21 H 1.48493 * 109.47431 * 59.99544 * 20 18 16 22 22 H 1.48500 * 109.47133 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46993 * 299.99586 * 20 18 16 24 24 H 1.09004 * 109.47285 * 96.33493 * 1 2 3 25 25 H 1.09002 * 109.46758 * 336.34019 * 1 2 3 26 26 H 1.08994 * 109.47145 * 216.33886 * 1 2 3 27 27 H 1.08002 * 120.34680 * 359.95771 * 3 2 1 28 28 H 1.07996 * 119.45915 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.71612 * 180.02562 * 6 5 4 30 30 H 0.96996 * 120.00438 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.46786 * 300.00271 * 11 10 8 32 32 H 1.08994 * 109.47212 * 59.99953 * 11 10 8 33 33 H 1.09003 * 109.47131 * 299.99682 * 12 11 10 34 34 H 1.08994 * 109.47353 * 59.99661 * 12 11 10 35 35 H 1.09003 * 109.46678 * 299.99806 * 13 12 11 36 36 H 1.08994 * 109.47354 * 59.99508 * 13 12 11 37 37 H 1.09007 * 109.47029 * 94.88690 * 15 14 13 38 38 H 1.08989 * 109.47142 * 214.88867 * 15 14 13 39 39 H 1.09000 * 109.47111 * 334.88744 * 15 14 13 40 40 H 0.97000 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1537 0.0005 7 6 2.2249 -1.2017 0.0060 8 6 1.5175 -2.4999 0.0123 9 8 0.3079 -2.5335 -0.1022 10 7 2.2140 -3.6461 0.1450 11 6 1.5131 -4.9326 0.1507 12 6 2.5281 -6.0657 0.3141 13 6 1.7962 -7.4092 0.3194 14 7 2.7682 -8.4942 0.4752 15 6 3.1320 -8.9651 1.8140 16 6 3.3367 -9.0682 -0.6304 17 1 3.3803 -8.5213 -1.5607 18 6 3.8567 -10.3530 -0.5556 19 7 3.6117 -11.1018 0.4989 20 14 4.9042 -11.0194 -1.9513 21 1 6.1007 -10.1578 -2.1273 22 1 5.3337 -12.4043 -1.6303 23 1 4.1104 -11.0263 -3.2063 24 1 -0.3634 -0.1134 -1.0214 25 1 -0.3633 0.9413 0.4124 26 1 -0.3633 -0.8278 0.6089 27 1 1.6966 2.1345 -0.0007 28 1 4.1558 2.0762 0.0001 29 1 4.1871 -2.0726 0.0010 30 1 3.1793 -3.6194 0.2360 31 1 0.8052 -4.9570 0.9793 32 1 0.9762 -5.0580 -0.7895 33 1 3.2362 -6.0414 -0.5143 34 1 3.0646 -5.9401 1.2545 35 1 1.0878 -7.4338 1.1475 36 1 1.2600 -7.5346 -0.6212 37 1 2.5169 -9.8262 2.0758 38 1 4.1832 -9.2528 1.8247 39 1 2.9663 -8.1668 2.5374 40 1 3.9755 -11.9995 0.5513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731233597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:05 Heat of formation + Delta-G solvation = -5.006452 kcal Electronic energy + Delta-G solvation = -20569.181651 eV Core-core repulsion = 17383.638965 eV Total energy + Delta-G solvation = -3185.542687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76566 -40.03689 -37.96953 -36.37438 -34.73396 -33.94211 -32.72245 -31.33748 -28.94801 -27.94002 -27.02260 -25.32953 -23.81549 -22.90651 -22.21938 -21.53481 -18.81748 -18.70332 -17.77913 -17.23941 -16.93358 -16.81186 -16.42020 -15.85225 -15.79636 -15.28547 -15.00568 -14.58730 -14.54217 -14.45648 -13.80184 -13.68646 -13.50504 -13.29182 -13.04344 -12.98323 -12.74942 -12.60581 -12.47980 -12.30246 -12.09791 -11.84229 -11.47820 -11.12651 -10.63794 -10.62601 -10.40845 -10.27571 -10.03804 -8.76680 -7.81337 -5.31296 -0.38436 0.16718 1.47734 1.49643 1.56309 1.79202 2.07033 2.52473 2.79630 3.31067 3.32606 3.62190 3.67090 3.70240 3.81616 4.00162 4.12740 4.27775 4.42939 4.47459 4.56663 4.66674 4.69298 4.75170 4.80665 4.83821 4.87219 4.93672 5.14367 5.25487 5.29539 5.34536 5.44673 5.51715 5.61595 5.64369 5.73336 6.34326 6.44540 6.84369 7.10714 7.16954 7.89073 8.32539 9.21725 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.002964 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.161088 B = 9443.128590 C = 9898.325004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.176 4.176 4 C 0.121 3.879 5 N -0.515 5.515 6 C 0.136 3.864 7 C -0.210 4.210 8 C 0.558 3.442 9 O -0.564 6.564 10 N -0.713 5.713 11 C 0.133 3.867 12 C -0.130 4.130 13 C 0.150 3.850 14 N -0.622 5.622 15 C 0.176 3.824 16 C -0.263 4.263 17 H 0.072 0.928 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.276 1.276 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.193 0.807 29 H 0.172 0.828 30 H 0.410 0.590 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.002 0.998 38 H 0.016 0.984 39 H 0.032 0.968 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 26.247 0.259 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.196 4.196 4 C -0.034 4.034 5 N -0.224 5.224 6 C -0.023 4.023 7 C -0.215 4.215 8 C 0.346 3.654 9 O -0.444 6.444 10 N -0.365 5.365 11 C 0.009 3.991 12 C -0.170 4.170 13 C 0.024 3.976 14 N -0.345 5.345 15 C 0.031 3.969 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.589 5.589 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.202 1.202 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.192 0.808 28 H 0.210 0.790 29 H 0.189 0.811 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.999 26.024 0.227 26.102 hybrid contribution 0.128 -1.081 -0.535 1.213 sum -1.872 24.943 -0.308 25.015 Atomic orbital electron populations 1.21033 0.88904 1.04009 1.03571 1.20782 0.98007 0.91877 0.89812 1.22420 0.95501 0.99149 1.02484 1.23602 0.92370 0.96927 0.90473 1.67778 1.41496 0.98982 1.14178 1.23215 0.90131 0.97437 0.91482 1.20869 0.95721 0.93920 1.11037 1.18331 0.86699 0.84197 0.76163 1.90718 1.14855 1.87587 1.51277 1.45943 1.11623 1.05585 1.73350 1.21225 0.94971 0.80996 1.01902 1.22184 0.98346 0.94290 1.02219 1.20771 0.90575 0.86605 0.99654 1.44151 1.48128 1.39549 1.02684 1.20547 0.97584 0.94500 0.84262 1.19512 1.32109 0.95953 0.91743 0.90986 1.25837 1.02883 0.96295 1.00075 1.70235 1.48470 1.08935 1.31221 0.85304 0.79005 0.76798 0.79112 1.20276 1.22202 1.20161 0.90481 0.89143 0.90622 0.80787 0.78990 0.81089 0.75237 0.91479 0.91964 0.92149 0.91618 0.93173 0.93738 0.97944 0.96539 0.94974 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.85 71.23 0.63 -1.46 16 2 C 0.00 0.07 5.95 -19.40 -0.12 -0.05 16 3 C -0.18 -2.21 9.78 22.33 0.22 -1.99 16 4 C 0.12 1.63 11.17 84.69 0.95 2.57 16 5 N -0.52 -9.79 10.35 -194.75 -2.01 -11.81 16 6 C 0.14 2.59 10.70 85.04 0.91 3.50 16 7 C -0.21 -4.50 5.89 -19.99 -0.12 -4.62 16 8 C 0.56 14.32 7.72 86.79 0.67 14.99 16 9 O -0.56 -17.63 13.51 -3.87 -0.05 -17.68 16 10 N -0.71 -16.59 5.51 -465.99 -2.57 -19.15 16 11 C 0.13 3.54 5.67 86.38 0.49 4.03 16 12 C -0.13 -3.98 5.65 30.59 0.17 -3.81 16 13 C 0.15 5.83 5.65 86.38 0.49 6.32 16 14 N -0.62 -30.90 2.92 -726.94 -2.13 -33.02 16 15 C 0.18 8.70 8.97 127.77 1.15 9.85 16 16 C -0.26 -14.35 9.66 84.03 0.81 -13.54 16 17 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 18 C -0.06 -3.16 5.13 84.86 0.44 -2.72 16 19 N -0.94 -56.16 10.62 21.65 0.23 -55.93 16 20 Si 0.97 45.02 29.57 68.60 2.03 47.05 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 1.03 8.06 -2.39 -0.02 1.02 16 26 H 0.08 1.74 5.94 -2.39 -0.01 1.73 16 27 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 28 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 29 H 0.17 2.58 6.48 -2.91 -0.02 2.56 16 30 H 0.41 7.63 6.58 -92.71 -0.61 7.02 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 37 H 0.00 0.12 7.36 -2.38 -0.02 0.11 16 38 H 0.02 0.86 7.28 -2.39 -0.02 0.84 16 39 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.24 333.44 2.61 -67.63 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.43 Total: 9.85 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.69 Total: 13.08 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -6.48 Total: -119.92 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.24 2.61 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731233597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.619 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds