Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38621 * 120.32606 * 2 1 4 4 C 1.38590 * 118.48845 * 179.70712 * 3 2 1 5 5 C 1.39308 * 119.06168 * 0.54614 * 4 3 2 6 6 C 1.48163 * 119.72798 * 179.71039 * 5 4 3 7 7 O 1.21517 * 119.99960 * 359.72832 * 6 5 4 8 8 N 1.34778 * 120.00310 * 179.72568 * 6 5 4 9 9 C 1.46497 * 119.99881 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47007 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47050 * 295.00319 * 10 9 8 12 12 C 1.52997 * 109.47164 * 175.00315 * 10 9 8 13 13 N 1.46500 * 109.46998 * 55.00265 * 10 9 8 14 14 C 1.36935 * 120.00170 * 205.00345 * 13 10 9 15 15 H 1.08001 * 119.99778 * 359.97438 * 14 13 10 16 16 C 1.38815 * 120.00097 * 180.02562 * 14 13 10 17 17 N 1.31614 * 120.00090 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47428 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47217 * 120.00103 * 18 16 14 21 21 H 1.48505 * 109.46946 * 239.99592 * 18 16 14 22 22 N 1.32717 * 120.54831 * 359.43617 * 5 4 3 23 23 C 1.31521 * 121.64442 * 0.27963 * 22 5 4 24 24 C 1.50700 * 119.54831 * 179.97438 * 23 22 5 25 25 H 1.09005 * 109.47420 * 270.02920 * 1 2 3 26 26 H 1.09001 * 109.47001 * 30.02547 * 1 2 3 27 27 H 1.08996 * 109.47258 * 150.02578 * 1 2 3 28 28 H 1.08008 * 120.75618 * 359.97086 * 3 2 1 29 29 H 1.08006 * 120.47027 * 180.28109 * 4 3 2 30 30 H 0.96993 * 119.99565 * 0.02562 * 8 6 5 31 31 H 1.09007 * 109.47018 * 60.00780 * 9 8 6 32 32 H 1.08995 * 109.47494 * 299.99938 * 9 8 6 33 33 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 34 34 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 35 35 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 36 36 H 0.97001 * 119.99882 * 25.00050 * 13 10 9 37 37 H 0.96997 * 120.00325 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47288 * 89.99481 * 24 23 22 39 39 H 1.08999 * 109.47017 * 209.99479 * 24 23 22 40 40 H 1.09004 * 109.47365 * 329.99580 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 0.0062 5 6 4.2294 -0.0866 0.0006 6 6 5.7096 -0.1513 0.0007 7 8 6.3626 0.8735 0.0006 8 7 6.3320 -1.3468 0.0008 9 6 7.7956 -1.4106 0.0003 10 6 8.2422 -2.8741 0.0000 11 1 7.9331 -3.3484 0.9314 12 6 9.7654 -2.9424 -0.1262 13 7 7.6266 -3.5723 -1.1313 14 6 7.4387 -4.9276 -1.0793 15 1 7.7447 -5.4820 -0.2043 16 6 6.8559 -5.5893 -2.1514 17 7 6.4835 -4.9138 -3.2179 18 14 6.6003 -7.4383 -2.0806 19 1 7.1012 -7.9580 -0.7829 20 1 5.1528 -7.7433 -2.2111 21 1 7.3442 -8.0838 -3.1921 22 7 3.5217 -1.2094 0.0007 23 6 2.2066 -1.1960 0.0006 24 6 1.4501 -2.4994 0.0002 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6846 2.1419 -0.0005 29 1 4.1693 2.0649 0.0110 30 1 5.8108 -2.1648 0.0006 31 1 8.1813 -0.9129 0.8901 32 1 8.1807 -0.9135 -0.8899 33 1 10.0745 -2.4680 -1.0576 34 1 10.2234 -2.4229 0.7155 35 1 10.0835 -3.9850 -0.1268 36 1 7.3521 -3.0744 -1.9172 37 1 6.0760 -5.3760 -3.9669 38 1 1.2677 -2.8140 1.0277 39 1 0.4980 -2.3668 -0.5136 40 1 2.0375 -3.2603 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731607109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -1.464388 kcal Electronic energy + Delta-G solvation = -21217.824335 eV Core-core repulsion = 18032.435244 eV Total energy + Delta-G solvation = -3185.389091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63655 -38.87320 -36.27519 -34.05134 -33.48234 -32.96275 -31.74674 -28.80853 -28.43153 -27.61959 -25.60303 -23.66767 -23.00156 -21.96584 -20.20194 -20.02298 -17.82709 -17.17133 -16.63039 -15.41378 -15.29819 -15.26084 -14.88837 -14.50001 -14.28461 -13.75166 -13.53127 -13.28061 -13.04581 -12.96482 -12.78303 -12.40456 -12.13553 -12.09856 -12.05554 -11.84477 -11.54458 -11.34266 -10.86192 -10.72384 -10.31086 -10.03768 -9.95349 -9.79746 -9.68006 -9.34867 -8.94694 -8.86701 -8.52117 -6.99179 -5.76413 -3.06448 0.69513 1.21257 2.93694 3.42543 3.48329 3.49661 3.50771 3.95416 4.18547 4.56616 4.58466 4.72201 4.75372 4.96864 5.21677 5.29549 5.43626 5.49519 5.52666 5.55803 5.56728 5.62161 5.64040 5.76137 5.98320 6.00816 6.05135 6.12034 6.18085 6.22174 6.35656 6.59629 6.61734 6.78291 6.87405 7.07467 7.70635 7.76752 8.09677 8.40513 8.57508 9.52563 10.07692 10.43322 11.45700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.005269 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.214330 B = 5312.390227 C = 6915.623658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.119 4.119 5 C 0.085 3.915 6 C 0.565 3.435 7 O -0.551 6.551 8 N -0.689 5.689 9 C 0.112 3.888 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.293 1.293 22 N -0.445 5.445 23 C 0.129 3.871 24 C -0.110 4.110 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.421 0.579 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.385 0.615 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 10.335 7.998 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.140 4.140 5 C -0.054 4.054 6 C 0.349 3.651 7 O -0.430 6.430 8 N -0.339 5.339 9 C -0.012 4.012 10 C 0.049 3.951 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.157 5.157 23 C -0.012 4.012 24 C -0.167 4.167 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.260 0.740 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.923 10.043 8.043 16.248 hybrid contribution -0.799 -0.430 -0.420 1.000 sum -10.722 9.613 7.623 16.293 Atomic orbital electron populations 1.20845 0.90082 1.03419 1.02722 1.20926 0.97638 0.93641 1.00300 1.21441 0.93614 0.98208 0.97754 1.22065 0.94807 0.98994 0.98099 1.21203 0.94438 0.89484 1.00265 1.17873 0.85737 0.84160 0.77306 1.90733 1.65954 1.34412 1.51873 1.45878 1.08104 1.08844 1.71117 1.21779 0.79229 0.98642 1.01580 1.20508 0.92196 0.89298 0.93096 0.92830 1.22360 0.98017 1.01768 1.00101 1.42467 1.72091 1.05419 1.16558 1.19258 1.33259 0.83766 1.00846 0.91083 1.24727 1.01599 0.97786 0.96513 1.69678 1.47070 1.34436 1.06527 0.86153 0.77381 0.85679 0.77162 1.20586 1.21907 1.21984 1.67475 1.08016 1.30306 1.09865 1.21189 0.89194 0.95265 0.95526 1.20831 0.99302 0.93301 1.03249 0.90662 0.91282 0.90492 0.84350 0.83605 0.73994 0.91612 0.91602 0.93194 0.94185 0.92290 0.78070 0.93593 0.90272 0.90405 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.62 36.00 0.35 -0.48 16 2 C -0.12 -1.37 5.91 -104.36 -0.62 -1.98 16 3 C -0.08 -0.93 9.85 -39.31 -0.39 -1.32 16 4 C -0.12 -1.64 9.63 -39.05 -0.38 -2.02 16 5 C 0.08 1.43 6.75 -83.01 -0.56 0.87 16 6 C 0.57 10.63 7.81 -12.18 -0.10 10.54 16 7 O -0.55 -11.20 16.32 5.35 0.09 -11.11 16 8 N -0.69 -13.05 5.38 -61.14 -0.33 -13.37 16 9 C 0.11 2.04 5.23 -4.04 -0.02 2.01 16 10 C 0.16 3.12 3.05 -67.93 -0.21 2.92 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.16 -2.88 9.49 37.16 0.35 -2.52 16 13 N -0.72 -17.63 4.56 -53.42 -0.24 -17.87 16 14 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 18 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 N -0.45 -7.47 9.45 -6.06 -0.06 -7.53 16 23 C 0.13 1.76 6.78 -82.61 -0.56 1.20 16 24 C -0.11 -1.22 9.77 36.01 0.35 -0.87 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.08 0.51 5.95 -51.93 -0.31 0.20 16 28 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.15 1.88 7.64 -52.48 -0.40 1.47 16 30 H 0.42 8.48 7.47 -40.82 -0.30 8.18 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.39 10.24 7.80 -40.82 -0.32 9.92 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -31.85 339.26 -7.58 -39.43 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.83 Total: 13.96 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.02 Total: 1.34 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: 0.09 Total: -65.80 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.85 -7.58 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731607109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.969 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds