Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38621 * 120.32606 * 2 1 4 4 C 1.38590 * 118.48845 * 179.70712 * 3 2 1 5 5 C 1.39308 * 119.06168 * 0.54614 * 4 3 2 6 6 C 1.48163 * 119.72798 * 179.71039 * 5 4 3 7 7 O 1.21517 * 119.99960 * 359.72832 * 6 5 4 8 8 N 1.34778 * 120.00310 * 179.72568 * 6 5 4 9 9 C 1.46497 * 119.99881 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47007 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47050 * 295.00319 * 10 9 8 12 12 C 1.52997 * 109.47164 * 175.00315 * 10 9 8 13 13 N 1.46500 * 109.46998 * 55.00265 * 10 9 8 14 14 C 1.36935 * 120.00170 * 205.00345 * 13 10 9 15 15 H 1.08001 * 119.99778 * 359.97438 * 14 13 10 16 16 C 1.38815 * 120.00097 * 180.02562 * 14 13 10 17 17 N 1.31614 * 120.00090 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47428 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47217 * 120.00103 * 18 16 14 21 21 H 1.48505 * 109.46946 * 239.99592 * 18 16 14 22 22 N 1.32717 * 120.54831 * 359.43617 * 5 4 3 23 23 C 1.31521 * 121.64442 * 0.27963 * 22 5 4 24 24 C 1.50700 * 119.54831 * 179.97438 * 23 22 5 25 25 H 1.09005 * 109.47420 * 270.02920 * 1 2 3 26 26 H 1.09001 * 109.47001 * 30.02547 * 1 2 3 27 27 H 1.08996 * 109.47258 * 150.02578 * 1 2 3 28 28 H 1.08008 * 120.75618 * 359.97086 * 3 2 1 29 29 H 1.08006 * 120.47027 * 180.28109 * 4 3 2 30 30 H 0.96993 * 119.99565 * 0.02562 * 8 6 5 31 31 H 1.09007 * 109.47018 * 60.00780 * 9 8 6 32 32 H 1.08995 * 109.47494 * 299.99938 * 9 8 6 33 33 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 34 34 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 35 35 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 36 36 H 0.97001 * 119.99882 * 25.00050 * 13 10 9 37 37 H 0.96997 * 120.00325 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47288 * 89.99481 * 24 23 22 39 39 H 1.08999 * 109.47017 * 209.99479 * 24 23 22 40 40 H 1.09004 * 109.47365 * 329.99580 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 0.0062 5 6 4.2294 -0.0866 0.0006 6 6 5.7096 -0.1513 0.0007 7 8 6.3626 0.8735 0.0006 8 7 6.3320 -1.3468 0.0008 9 6 7.7956 -1.4106 0.0003 10 6 8.2422 -2.8741 0.0000 11 1 7.9331 -3.3484 0.9314 12 6 9.7654 -2.9424 -0.1262 13 7 7.6266 -3.5723 -1.1313 14 6 7.4387 -4.9276 -1.0793 15 1 7.7447 -5.4820 -0.2043 16 6 6.8559 -5.5893 -2.1514 17 7 6.4835 -4.9138 -3.2179 18 14 6.6003 -7.4383 -2.0806 19 1 7.1012 -7.9580 -0.7829 20 1 5.1528 -7.7433 -2.2111 21 1 7.3442 -8.0838 -3.1921 22 7 3.5217 -1.2094 0.0007 23 6 2.2066 -1.1960 0.0006 24 6 1.4501 -2.4994 0.0002 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6846 2.1419 -0.0005 29 1 4.1693 2.0649 0.0110 30 1 5.8108 -2.1648 0.0006 31 1 8.1813 -0.9129 0.8901 32 1 8.1807 -0.9135 -0.8899 33 1 10.0745 -2.4680 -1.0576 34 1 10.2234 -2.4229 0.7155 35 1 10.0835 -3.9850 -0.1268 36 1 7.3521 -3.0744 -1.9172 37 1 6.0760 -5.3760 -3.9669 38 1 1.2677 -2.8140 1.0277 39 1 0.4980 -2.3668 -0.5136 40 1 2.0375 -3.2603 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731607109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -23.458476 kcal Electronic energy + Delta-G solvation = -21218.778070 eV Core-core repulsion = 18032.435244 eV Total energy + Delta-G solvation = -3186.342826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75103 -40.23688 -37.94517 -35.33561 -34.87583 -34.02004 -33.52543 -30.62595 -29.34353 -28.73219 -26.92639 -25.65121 -24.03455 -23.01875 -21.74745 -21.40926 -19.47389 -18.84823 -17.79479 -16.98264 -16.71982 -16.43221 -16.19468 -15.79443 -15.67319 -15.28931 -15.02776 -14.51873 -14.18462 -13.89347 -13.69914 -13.67219 -13.62484 -13.47208 -13.13546 -13.06898 -12.96415 -12.81225 -12.50791 -12.32693 -12.13849 -11.73628 -11.66337 -11.39056 -10.98437 -10.76915 -10.47692 -10.15491 -9.74540 -9.02790 -7.90954 -5.20470 -0.38356 0.23525 1.48939 1.49278 1.59121 1.65793 2.14405 2.57848 2.80390 3.07490 3.43455 3.69969 3.79560 3.87190 3.89058 3.94934 3.98912 4.26661 4.36532 4.57305 4.60545 4.66800 4.70400 4.72239 4.75962 4.81115 4.90154 5.05369 5.06575 5.14135 5.23575 5.23617 5.27565 5.36484 5.55638 5.56690 5.71367 6.29060 6.42742 6.83794 7.11819 7.36029 8.07819 8.32662 9.32357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.005269 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.214330 B = 5312.390227 C = 6915.623658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.079 4.079 4 C -0.120 4.120 5 C 0.046 3.954 6 C 0.561 3.439 7 O -0.574 6.574 8 N -0.694 5.694 9 C 0.119 3.881 10 C 0.158 3.842 11 H 0.057 0.943 12 C -0.153 4.153 13 N -0.732 5.732 14 C -0.234 4.234 15 H 0.078 0.922 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.295 1.295 21 H -0.298 1.298 22 N -0.480 5.480 23 C 0.105 3.895 24 C -0.107 4.107 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.181 0.819 29 H 0.150 0.850 30 H 0.414 0.586 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.371 0.629 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 10.964 9.297 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.141 4.141 5 C -0.091 4.091 6 C 0.347 3.653 7 O -0.455 6.455 8 N -0.344 5.344 9 C -0.005 4.005 10 C 0.050 3.950 11 H 0.075 0.925 12 C -0.213 4.213 13 N -0.373 5.373 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.264 4.264 17 N -0.619 5.619 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.225 1.225 22 N -0.193 5.193 23 C -0.036 4.036 24 C -0.164 4.164 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.198 0.802 29 H 0.168 0.832 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.680 10.680 9.394 18.405 hybrid contribution -0.311 -0.552 -0.754 0.984 sum -11.991 10.129 8.641 17.918 Atomic orbital electron populations 1.20983 0.86713 1.04927 1.04302 1.21399 0.99868 0.92516 0.97169 1.21912 0.92366 1.00040 0.96050 1.22235 0.96368 0.97888 0.97617 1.21009 0.93270 0.90903 1.03888 1.18295 0.87019 0.83574 0.76370 1.90691 1.66867 1.34824 1.53122 1.45920 1.08255 1.08765 1.71417 1.21722 0.79161 0.97584 1.02027 1.20694 0.93214 0.89671 0.91423 0.92515 1.22215 0.96229 1.01438 1.01408 1.42603 1.72582 1.04850 1.17288 1.19619 1.31459 0.84960 1.00559 0.90387 1.25483 1.02472 1.01896 0.96525 1.69840 1.48870 1.35920 1.07276 0.85134 0.76782 0.80811 0.77384 1.18982 1.22210 1.22533 1.67362 1.09851 1.30888 1.11173 1.21732 0.88533 0.97400 0.95940 1.20900 0.99800 0.91486 1.04175 0.88754 0.89200 0.89610 0.80177 0.83218 0.74839 0.89516 0.92631 0.93765 0.90579 0.93480 0.79724 0.94276 0.88879 0.87360 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.62 71.24 0.69 -0.46 16 2 C -0.11 -2.10 5.91 -19.70 -0.12 -2.22 16 3 C -0.08 -1.52 9.85 22.45 0.22 -1.30 16 4 C -0.12 -3.24 9.63 22.61 0.22 -3.02 16 5 C 0.05 1.60 6.75 41.91 0.28 1.89 16 6 C 0.56 21.92 7.81 86.88 0.68 22.60 16 7 O -0.57 -23.98 16.32 -3.77 -0.06 -24.04 16 8 N -0.69 -27.27 5.38 -465.65 -2.50 -29.77 16 9 C 0.12 4.37 5.23 86.38 0.45 4.82 16 10 C 0.16 6.21 3.05 44.99 0.14 6.34 16 11 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 12 C -0.15 -5.27 9.49 71.98 0.68 -4.58 16 13 N -0.73 -36.44 4.56 -322.93 -1.47 -37.92 16 14 C -0.23 -12.74 9.93 84.03 0.83 -11.90 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 17 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 18 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 22 N -0.48 -16.59 9.45 -173.09 -1.64 -18.23 16 23 C 0.10 2.80 6.78 42.68 0.29 3.09 16 24 C -0.11 -2.28 9.77 71.24 0.70 -1.59 16 25 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 27 H 0.09 0.77 5.95 -2.39 -0.01 0.75 16 28 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.15 3.80 7.64 -2.91 -0.02 3.78 16 30 H 0.41 17.50 7.47 -92.71 -0.69 16.81 16 31 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.37 20.46 7.80 -92.71 -0.72 19.73 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.11 1.57 5.93 -2.39 -0.01 1.56 16 40 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -71.27 339.26 1.81 -69.46 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.36 Total: 41.61 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.53 Total: 10.06 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -5.33 Total: -145.10 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.27 1.81 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731607109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.006 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds