Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38396 * 120.85864 * 2 1 4 4 C 1.38318 * 119.30518 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08135 * 0.02562 * 4 3 2 6 6 C 1.31675 * 121.87731 * 359.67671 * 5 4 3 7 7 C 1.39560 * 120.56343 * 0.59337 * 6 5 4 8 8 C 1.47843 * 120.55299 * 179.72660 * 7 6 5 9 9 O 1.21554 * 119.99220 * 173.90442 * 8 7 6 10 10 N 1.34770 * 120.00293 * 353.90397 * 8 7 6 11 11 C 1.46505 * 119.99879 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47078 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47087 * 54.99629 * 12 11 10 14 14 C 1.53005 * 109.47057 * 294.99830 * 12 11 10 15 15 C 1.52999 * 109.46929 * 174.99762 * 12 11 10 16 16 N 1.46504 * 109.47119 * 184.99466 * 15 12 11 17 17 C 1.36931 * 120.00085 * 179.72116 * 16 15 12 18 18 H 1.07996 * 120.00323 * 0.28815 * 17 16 15 19 19 C 1.38817 * 120.00028 * 180.27879 * 17 16 15 20 20 N 1.31618 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00046 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46989 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46896 * 120.00101 * 21 19 17 24 24 H 1.48497 * 109.47156 * 240.00346 * 21 19 17 25 25 H 1.09004 * 109.47161 * 263.64150 * 1 2 3 26 26 H 1.09006 * 109.47152 * 23.63470 * 1 2 3 27 27 H 1.08998 * 109.47454 * 143.63814 * 1 2 3 28 28 H 1.07996 * 120.35064 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.45653 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.71164 * 180.30873 * 6 5 4 31 31 H 0.96992 * 120.00228 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47123 * 59.99656 * 11 10 8 33 33 H 1.09001 * 109.46989 * 299.99764 * 11 10 8 34 34 H 1.09000 * 109.47048 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47008 * 299.99847 * 14 12 11 36 36 H 1.09001 * 109.47069 * 59.99834 * 14 12 11 37 37 H 1.09003 * 109.47180 * 65.00430 * 15 12 11 38 38 H 1.09001 * 109.47643 * 304.99862 * 15 12 11 39 39 H 0.97007 * 119.99538 * 0.02562 * 16 15 12 40 40 H 0.96995 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1505 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6196 -1.1537 0.0042 7 6 2.2248 -1.2017 -0.0008 8 6 1.5175 -2.5000 -0.0004 9 8 0.3072 -2.5325 0.1071 10 7 2.2146 -3.6473 -0.1191 11 6 1.5136 -4.9337 -0.1193 12 6 2.5295 -6.0681 -0.2667 13 1 3.2838 -5.9843 0.5156 14 6 3.2035 -5.9743 -1.6371 15 6 1.8127 -7.4141 -0.1419 16 7 2.7995 -8.4967 -0.1636 17 6 2.3894 -9.7990 -0.0592 18 1 1.3382 -10.0284 0.0344 19 6 3.3249 -10.8246 -0.0738 20 7 4.6060 -10.5451 -0.1876 21 14 2.7654 -12.6012 0.0679 22 1 1.2856 -12.6464 0.1832 23 1 3.1905 -13.3519 -1.1409 24 1 3.3754 -13.2176 1.2733 25 1 -0.3634 -0.1138 1.0214 26 1 -0.3634 0.9415 -0.4120 27 1 -0.3634 -0.8275 -0.6093 28 1 1.6967 2.1345 0.0004 29 1 4.1558 2.0761 -0.0001 30 1 4.1870 -2.0727 0.0082 31 1 3.1804 -3.6213 -0.2053 32 1 0.8113 -4.9647 -0.9525 33 1 0.9703 -5.0515 0.8183 34 1 3.9270 -6.7828 -1.7423 35 1 2.4492 -6.0582 -2.4194 36 1 3.7141 -5.0154 -1.7260 37 1 1.1213 -7.5361 -0.9757 38 1 1.2594 -7.4455 0.7966 39 1 3.7437 -8.2907 -0.2474 40 1 5.2597 -11.2616 -0.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732339820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = -0.042630 kcal Electronic energy + Delta-G solvation = -20623.052785 eV Core-core repulsion = 17437.725346 eV Total energy + Delta-G solvation = -3185.327439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00130 -39.21579 -36.92141 -34.68577 -33.93220 -32.80468 -31.60059 -30.01128 -28.26893 -26.57256 -25.51048 -24.39785 -22.76821 -22.14493 -20.89380 -19.96288 -18.03613 -17.08842 -16.91437 -16.54994 -15.85419 -15.51245 -15.15995 -14.73875 -14.51971 -13.98919 -13.89705 -13.59869 -13.13484 -13.07690 -12.99744 -12.76016 -12.62034 -12.37753 -12.21300 -12.07778 -11.08087 -10.93800 -10.73399 -10.59999 -10.44771 -10.27318 -10.01114 -9.88463 -9.71655 -9.59859 -9.55829 -9.08198 -8.89240 -6.93441 -5.78093 -3.06532 0.33292 0.84071 2.66782 2.99834 3.43039 3.48976 3.51042 3.51902 3.95445 4.31873 4.35265 4.50340 4.58236 4.67430 4.98150 5.04550 5.17835 5.18052 5.29085 5.35469 5.46590 5.50043 5.56810 5.77169 5.80593 5.92047 5.93603 6.02678 6.10450 6.20803 6.26145 6.36047 6.41899 6.63251 6.74835 6.84187 7.34567 7.50937 7.70153 8.03686 8.41000 9.52407 10.09469 10.44175 11.44978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.002823 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.306855 B = 9915.815087 C =10454.338086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.019 3.981 3 C -0.186 4.186 4 C 0.122 3.878 5 N -0.492 5.492 6 C 0.139 3.861 7 C -0.192 4.192 8 C 0.560 3.440 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.127 3.873 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.399 0.601 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 24.822 -0.578 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 C -0.206 4.206 4 C -0.034 4.034 5 N -0.201 5.201 6 C -0.019 4.019 7 C -0.197 4.197 8 C 0.347 3.653 9 O -0.410 6.410 10 N -0.369 5.369 11 C 0.004 3.996 12 C -0.131 4.131 13 H 0.096 0.904 14 C -0.200 4.200 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.177 0.823 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.836 24.628 -0.495 24.930 hybrid contribution -0.220 -0.934 0.047 0.960 sum -4.057 23.694 -0.448 24.043 Atomic orbital electron populations 1.21107 0.89030 1.03612 1.04237 1.20521 0.97628 0.91325 0.89518 1.22093 0.95578 0.98707 1.04176 1.22989 0.91786 0.96466 0.92156 1.67718 1.40833 0.98293 1.13279 1.23026 0.90435 0.96697 0.91782 1.20926 0.95230 0.94493 1.09062 1.17991 0.86979 0.83440 0.76938 1.90736 1.13474 1.87111 1.49695 1.46005 1.10983 1.06119 1.73837 1.21474 0.94982 0.80625 1.02559 1.21571 0.97725 0.94948 0.98834 0.90436 1.21802 1.01032 1.01051 0.96080 1.20569 0.92284 0.85768 0.98101 1.42348 1.05055 1.01399 1.88764 1.19279 0.92640 0.83071 1.41951 0.91097 1.24742 0.95306 0.98011 1.03004 1.69662 0.99726 1.31282 1.57614 0.86110 0.77658 0.85177 0.77219 1.20540 1.21872 1.21870 0.89916 0.91829 0.88159 0.84104 0.82234 0.82338 0.76488 0.91069 0.91048 0.91041 0.92757 0.93943 0.95965 0.96104 0.78193 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.85 36.00 0.32 -0.80 16 2 C 0.02 0.18 5.95 -103.91 -0.62 -0.44 16 3 C -0.19 -1.40 9.78 -39.49 -0.39 -1.79 16 4 C 0.12 0.97 11.17 -17.47 -0.20 0.77 16 5 N -0.49 -5.02 10.35 -12.91 -0.13 -5.15 16 6 C 0.14 1.37 10.70 -17.13 -0.18 1.18 16 7 C -0.19 -2.06 5.89 -104.82 -0.62 -2.68 16 8 C 0.56 6.99 7.72 -12.33 -0.10 6.90 16 9 O -0.53 -8.01 13.50 5.32 0.07 -7.93 16 10 N -0.72 -8.16 5.24 -61.25 -0.32 -8.48 16 11 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 12 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -2.05 8.94 37.16 0.33 -1.71 16 15 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 16 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 17 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 28 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.16 1.22 6.47 -52.48 -0.34 0.88 16 31 H 0.40 3.70 5.76 -40.82 -0.24 3.47 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -32.83 332.73 -7.62 -40.46 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.68 Total: 7.50 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.96 Total: -3.00 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.05 Total: -59.40 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.83 -7.62 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732339820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.415 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds