Wall clock time and date at job start Mon Mar 30 2020 01:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38396 * 120.85864 * 2 1 4 4 C 1.38318 * 119.30518 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08135 * 0.02562 * 4 3 2 6 6 C 1.31675 * 121.87731 * 359.67671 * 5 4 3 7 7 C 1.39560 * 120.56343 * 0.59337 * 6 5 4 8 8 C 1.47843 * 120.55299 * 179.72660 * 7 6 5 9 9 O 1.21554 * 119.99220 * 173.90442 * 8 7 6 10 10 N 1.34770 * 120.00293 * 353.90397 * 8 7 6 11 11 C 1.46505 * 119.99879 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47078 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47087 * 54.99629 * 12 11 10 14 14 C 1.53005 * 109.47057 * 294.99830 * 12 11 10 15 15 C 1.52999 * 109.46929 * 174.99762 * 12 11 10 16 16 N 1.46504 * 109.47119 * 184.99466 * 15 12 11 17 17 C 1.36931 * 120.00085 * 179.72116 * 16 15 12 18 18 H 1.07996 * 120.00323 * 0.28815 * 17 16 15 19 19 C 1.38817 * 120.00028 * 180.27879 * 17 16 15 20 20 N 1.31618 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00046 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46989 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46896 * 120.00101 * 21 19 17 24 24 H 1.48497 * 109.47156 * 240.00346 * 21 19 17 25 25 H 1.09004 * 109.47161 * 263.64150 * 1 2 3 26 26 H 1.09006 * 109.47152 * 23.63470 * 1 2 3 27 27 H 1.08998 * 109.47454 * 143.63814 * 1 2 3 28 28 H 1.07996 * 120.35064 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.45653 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.71164 * 180.30873 * 6 5 4 31 31 H 0.96992 * 120.00228 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47123 * 59.99656 * 11 10 8 33 33 H 1.09001 * 109.46989 * 299.99764 * 11 10 8 34 34 H 1.09000 * 109.47048 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47008 * 299.99847 * 14 12 11 36 36 H 1.09001 * 109.47069 * 59.99834 * 14 12 11 37 37 H 1.09003 * 109.47180 * 65.00430 * 15 12 11 38 38 H 1.09001 * 109.47643 * 304.99862 * 15 12 11 39 39 H 0.97007 * 119.99538 * 0.02562 * 16 15 12 40 40 H 0.96995 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1505 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6196 -1.1537 0.0042 7 6 2.2248 -1.2017 -0.0008 8 6 1.5175 -2.5000 -0.0004 9 8 0.3072 -2.5325 0.1071 10 7 2.2146 -3.6473 -0.1191 11 6 1.5136 -4.9337 -0.1193 12 6 2.5295 -6.0681 -0.2667 13 1 3.2838 -5.9843 0.5156 14 6 3.2035 -5.9743 -1.6371 15 6 1.8127 -7.4141 -0.1419 16 7 2.7995 -8.4967 -0.1636 17 6 2.3894 -9.7990 -0.0592 18 1 1.3382 -10.0284 0.0344 19 6 3.3249 -10.8246 -0.0738 20 7 4.6060 -10.5451 -0.1876 21 14 2.7654 -12.6012 0.0679 22 1 1.2856 -12.6464 0.1832 23 1 3.1905 -13.3519 -1.1409 24 1 3.3754 -13.2176 1.2733 25 1 -0.3634 -0.1138 1.0214 26 1 -0.3634 0.9415 -0.4120 27 1 -0.3634 -0.8275 -0.6093 28 1 1.6967 2.1345 0.0004 29 1 4.1558 2.0761 -0.0001 30 1 4.1870 -2.0727 0.0082 31 1 3.1804 -3.6213 -0.2053 32 1 0.8113 -4.9647 -0.9525 33 1 0.9703 -5.0515 0.8183 34 1 3.9270 -6.7828 -1.7423 35 1 2.4492 -6.0582 -2.4194 36 1 3.7141 -5.0154 -1.7260 37 1 1.1213 -7.5361 -0.9757 38 1 1.2594 -7.4455 0.7966 39 1 3.7437 -8.2907 -0.2474 40 1 5.2597 -11.2616 -0.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732339820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:20 Heat of formation + Delta-G solvation = -22.446361 kcal Electronic energy + Delta-G solvation = -20624.024283 eV Core-core repulsion = 17437.725346 eV Total energy + Delta-G solvation = -3186.298938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78143 -40.11640 -38.25496 -36.11176 -34.78341 -34.25309 -32.63645 -31.64466 -29.01593 -27.75796 -27.07879 -25.38003 -24.25991 -23.06655 -21.86408 -21.26447 -19.34824 -18.62678 -17.79208 -17.24320 -16.94409 -16.61820 -16.38091 -15.93333 -15.72243 -15.44667 -15.04178 -14.86437 -14.56037 -14.09237 -13.81740 -13.67503 -13.59980 -13.58921 -13.41995 -12.97153 -12.94467 -12.83170 -12.18678 -12.12958 -12.00075 -11.69982 -11.66064 -11.10055 -10.95332 -10.63339 -10.40250 -10.27118 -10.04432 -8.99238 -7.95601 -5.23719 -0.37864 0.17498 1.47982 1.48203 1.58476 1.79621 2.04248 2.56594 2.80370 3.31669 3.38401 3.63358 3.69870 3.71786 3.81980 3.95971 3.99993 4.08475 4.34154 4.42955 4.53686 4.57047 4.68287 4.70826 4.75152 4.79038 4.84375 4.93555 5.03382 5.12263 5.15031 5.28337 5.37222 5.42433 5.47956 5.50574 5.62079 6.27350 6.43200 6.85169 7.10520 7.34188 8.09509 8.33473 9.28112 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.002823 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.306855 B = 9915.815087 C =10454.338086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.176 4.176 4 C 0.122 3.878 5 N -0.515 5.515 6 C 0.136 3.864 7 C -0.209 4.209 8 C 0.560 3.440 9 O -0.563 6.563 10 N -0.710 5.710 11 C 0.140 3.860 12 C -0.096 4.096 13 H 0.079 0.921 14 C -0.137 4.137 15 C 0.157 3.843 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.074 0.926 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.193 0.807 30 H 0.173 0.827 31 H 0.411 0.589 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.376 0.624 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 26.723 -0.612 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.196 4.196 4 C -0.034 4.034 5 N -0.224 5.224 6 C -0.022 4.022 7 C -0.215 4.215 8 C 0.348 3.652 9 O -0.444 6.444 10 N -0.362 5.362 11 C 0.015 3.985 12 C -0.115 4.115 13 H 0.097 0.903 14 C -0.194 4.194 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.191 0.809 29 H 0.209 0.791 30 H 0.190 0.810 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.209 0.791 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.025 26.554 -0.530 26.863 hybrid contribution -0.196 -1.397 0.058 1.412 sum -4.221 25.157 -0.472 25.513 Atomic orbital electron populations 1.21032 0.88942 1.03989 1.03561 1.20773 0.97976 0.91899 0.89816 1.22415 0.95509 0.99151 1.02508 1.23593 0.92352 0.96938 0.90471 1.67778 1.41490 0.98985 1.14151 1.23224 0.90109 0.97449 0.91456 1.20849 0.95704 0.93856 1.11053 1.18299 0.86679 0.84139 0.76122 1.90727 1.14835 1.87598 1.51193 1.45848 1.11506 1.05258 1.73576 1.21183 0.94296 0.80820 1.02152 1.21350 0.97656 0.93100 0.99365 0.90258 1.21738 1.00445 1.01718 0.95499 1.20722 0.91728 0.86723 0.97815 1.42527 1.05614 1.01792 1.88603 1.19660 0.92812 0.84580 1.40602 0.90815 1.25542 0.95481 1.01996 1.03703 1.69805 1.00690 1.32170 1.59225 0.85090 0.77801 0.80257 0.76713 1.19201 1.21988 1.21996 0.90492 0.89217 0.90594 0.80866 0.79053 0.80999 0.75142 0.91354 0.91672 0.93814 0.92859 0.90737 0.95971 0.96146 0.79079 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 8.85 71.23 0.63 -1.41 16 2 C 0.00 0.07 5.95 -19.41 -0.12 -0.05 16 3 C -0.18 -2.13 9.78 22.33 0.22 -1.92 16 4 C 0.12 1.57 11.17 84.69 0.95 2.51 16 5 N -0.51 -9.43 10.35 -194.75 -2.01 -11.44 16 6 C 0.14 2.47 10.70 85.04 0.91 3.38 16 7 C -0.21 -4.29 5.89 -19.99 -0.12 -4.40 16 8 C 0.56 13.72 7.72 86.79 0.67 14.39 16 9 O -0.56 -17.08 13.50 -3.88 -0.05 -17.13 16 10 N -0.71 -15.46 5.24 -465.96 -2.44 -17.90 16 11 C 0.14 3.58 5.06 86.38 0.44 4.02 16 12 C -0.10 -2.80 2.46 -10.79 -0.03 -2.83 16 13 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.14 -3.82 8.94 71.98 0.64 -3.18 16 15 C 0.16 6.12 5.65 86.38 0.49 6.60 16 16 N -0.74 -37.18 5.33 -343.44 -1.83 -39.01 16 17 C -0.24 -13.68 9.99 84.04 0.84 -12.84 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 21 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.09 1.00 8.07 -2.38 -0.02 0.98 16 27 H 0.08 1.70 5.95 -2.39 -0.01 1.69 16 28 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 29 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.17 2.38 6.47 -2.91 -0.02 2.36 16 31 H 0.41 6.99 5.76 -92.71 -0.53 6.45 16 32 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.48 7.18 -2.39 -0.02 1.46 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.59 7.18 -2.39 -0.02 1.57 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.38 19.78 6.85 -92.70 -0.64 19.15 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -70.92 332.73 1.85 -69.07 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.11 Total: 26.30 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.99 Total: 0.46 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.00 Total: -126.95 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.92 1.85 -69.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732339820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.624 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds