Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38358 * 120.34800 * 2 1 4 4 N 1.31919 * 121.07883 * 180.27098 * 3 2 1 5 5 C 1.31688 * 121.88465 * 0.02562 * 4 3 2 6 6 C 1.39526 * 120.56346 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.55842 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00014 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00052 * 0.02857 * 7 6 5 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46903 * 34.99514 * 10 9 7 12 12 C 1.52998 * 109.46811 * 274.99905 * 10 9 7 13 13 C 1.52997 * 109.47190 * 154.99637 * 10 9 7 14 14 C 1.53005 * 109.47511 * 295.00161 * 13 10 9 15 15 N 1.46492 * 109.47278 * 180.02562 * 14 13 10 16 16 C 1.36940 * 119.99908 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00104 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99730 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46952 * 60.00067 * 20 18 16 22 22 H 1.48500 * 109.47292 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47055 * 300.00272 * 20 18 16 24 24 C 1.38355 * 120.35066 * 180.27566 * 2 1 3 25 25 H 1.08998 * 109.47142 * 269.72301 * 1 2 3 26 26 H 1.08996 * 109.46912 * 29.72324 * 1 2 3 27 27 H 1.09000 * 109.46651 * 149.72139 * 1 2 3 28 28 H 1.08008 * 119.45884 * 0.25421 * 3 2 1 29 29 H 1.08000 * 119.71869 * 179.97438 * 5 4 3 30 30 H 0.97005 * 120.00217 * 359.97438 * 9 7 6 31 31 H 1.08994 * 109.47754 * 60.00033 * 12 10 9 32 32 H 1.09007 * 109.46644 * 180.02562 * 12 10 9 33 33 H 1.08997 * 109.47067 * 299.99508 * 12 10 9 34 34 H 1.09005 * 109.46920 * 55.00091 * 13 10 9 35 35 H 1.08996 * 109.47253 * 175.00056 * 13 10 9 36 36 H 1.09000 * 109.46525 * 300.00014 * 14 13 10 37 37 H 1.08996 * 109.46948 * 59.99708 * 14 13 10 38 38 H 0.96999 * 119.99899 * 359.97438 * 15 14 13 39 39 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.85081 * 359.70453 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 -0.0053 5 6 4.2349 0.1016 -0.0114 6 6 3.6054 -1.1435 -0.0118 7 6 4.4023 -2.3887 -0.0192 8 8 3.8434 -3.4681 -0.0199 9 7 5.7487 -2.3271 -0.0250 10 6 6.5384 -3.5610 -0.0317 11 1 6.0226 -4.3193 -0.6208 12 6 6.7138 -4.0620 1.4033 13 6 7.9117 -3.2842 -0.6467 14 6 7.7438 -2.9031 -2.1190 15 7 9.0588 -2.6387 -2.7080 16 6 9.1590 -2.2780 -4.0252 17 1 8.2686 -2.1888 -4.6300 18 6 10.4050 -2.0269 -4.5832 19 7 11.4900 -2.1351 -3.8462 20 14 10.5417 -1.5356 -6.3802 21 1 9.7864 -0.2774 -6.6082 22 1 11.9699 -1.3250 -6.7286 23 1 9.9775 -2.6130 -7.2323 24 6 2.2061 -1.1939 -0.0057 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3632 -0.8875 -0.5182 28 1 1.6629 2.1275 0.0042 29 1 5.3135 0.1562 -0.0161 30 1 6.1948 -1.4658 -0.0247 31 1 5.7355 -4.2592 1.8415 32 1 7.3018 -4.9799 1.3983 33 1 7.2296 -3.3038 1.9923 34 1 8.3909 -2.4644 -0.1116 35 1 8.5305 -4.1783 -0.5712 36 1 7.2646 -3.7230 -2.6541 37 1 7.1250 -2.0090 -2.1945 38 1 9.8585 -2.7192 -2.1650 39 1 12.3607 -1.9593 -4.2360 40 1 1.6859 -2.1403 -0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732679612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = -4.378854 kcal Electronic energy + Delta-G solvation = -20717.841323 eV Core-core repulsion = 17532.325851 eV Total energy + Delta-G solvation = -3185.515472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86021 -39.32134 -36.57037 -34.44941 -33.95883 -32.76906 -31.60832 -30.45677 -27.89139 -27.60219 -24.98984 -23.88884 -23.00090 -21.72099 -20.86110 -20.44428 -17.96857 -17.19179 -17.10986 -16.55243 -15.87601 -15.23656 -14.73411 -14.59759 -14.30635 -13.86078 -13.70890 -13.49309 -13.40923 -13.25626 -13.04205 -12.94014 -12.84145 -12.42036 -12.21656 -11.88856 -11.22913 -11.03548 -10.79631 -10.66628 -10.58882 -10.29905 -10.07382 -10.04909 -9.70358 -9.61370 -9.30165 -9.04990 -8.86157 -6.93176 -5.76956 -3.05860 0.40795 0.91811 2.74330 3.05768 3.44640 3.48763 3.49957 3.61692 4.03602 4.39039 4.51231 4.57412 4.60196 4.65297 4.82599 4.94122 5.17106 5.20674 5.23901 5.31940 5.35931 5.54633 5.58940 5.69794 5.73026 5.76116 5.86184 5.91430 6.00851 6.21422 6.25759 6.28538 6.31941 6.47581 6.79647 6.84356 7.44206 7.59186 7.69620 8.12124 8.42129 9.53185 10.10497 10.45234 11.45888 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003697 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.007203 B = 7571.133399 C = 8640.125196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C 0.118 3.882 4 N -0.482 5.482 5 C 0.130 3.870 6 C -0.179 4.179 7 C 0.564 3.436 8 O -0.539 6.539 9 N -0.711 5.711 10 C 0.145 3.855 11 H 0.091 0.909 12 C -0.161 4.161 13 C -0.136 4.136 14 C 0.153 3.847 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.401 0.599 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.349 3.357 12.604 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C -0.039 4.039 4 N -0.190 5.190 5 C -0.028 4.028 6 C -0.184 4.184 7 C 0.350 3.650 8 O -0.417 6.417 9 N -0.363 5.363 10 C 0.041 3.959 11 H 0.109 0.891 12 C -0.219 4.219 13 C -0.174 4.174 14 C 0.026 3.974 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.046 4.046 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.237 0.763 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.307 3.413 12.425 23.212 hybrid contribution 0.296 -0.094 -0.887 0.940 sum -19.011 3.319 11.537 22.484 Atomic orbital electron populations 1.20731 0.89632 1.03480 1.02817 1.20947 0.98013 0.93784 1.02252 1.22921 0.89969 0.97684 0.93293 1.67708 1.08011 1.30989 1.12253 1.23035 1.00465 0.86801 0.92506 1.21064 0.95193 0.94964 1.07210 1.17992 0.82333 0.88251 0.76439 1.90762 1.71176 1.29589 1.50141 1.46057 1.05571 1.10506 1.74129 1.21038 0.91908 0.86252 0.96738 0.89122 1.22164 1.02029 1.01505 0.96238 1.22079 0.94769 1.02902 0.97626 1.20637 0.89528 0.97140 0.90115 1.42348 1.02337 1.83211 1.09882 1.19188 0.92590 1.38424 0.87011 0.91306 1.24736 0.95411 1.02608 0.98171 1.69645 0.97301 1.55944 1.35401 0.86264 0.76570 0.78418 0.84925 1.21239 1.21640 1.21242 1.21629 0.92485 0.98983 0.91543 0.90705 0.90911 0.90996 0.82337 0.82222 0.76307 0.92393 0.91352 0.92428 0.91254 0.90042 0.96399 0.96438 0.78296 0.93446 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.15 -1.29 5.89 -104.53 -0.62 -1.91 16 3 C 0.12 1.10 10.85 -17.47 -0.19 0.91 16 4 N -0.48 -5.61 10.34 -12.91 -0.13 -5.74 16 5 C 0.13 1.47 10.71 -17.13 -0.18 1.29 16 6 C -0.18 -2.14 5.89 -104.82 -0.62 -2.75 16 7 C 0.56 7.74 7.75 -12.33 -0.10 7.64 16 8 O -0.54 -8.94 16.08 5.32 0.09 -8.85 16 9 N -0.71 -8.91 4.48 -54.76 -0.25 -9.16 16 10 C 0.14 1.93 2.57 -67.93 -0.17 1.75 16 11 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 12 C -0.16 -1.84 9.48 37.16 0.35 -1.48 16 13 C -0.14 -2.05 4.87 -26.73 -0.13 -2.18 16 14 C 0.15 3.05 6.15 -4.04 -0.02 3.03 16 15 N -0.73 -18.61 5.60 -59.91 -0.34 -18.95 16 16 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 20 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.02 -0.21 9.39 -38.87 -0.37 -0.58 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.16 1.53 6.42 -52.49 -0.34 1.19 16 30 H 0.40 4.37 6.67 -40.82 -0.27 4.10 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 38 H 0.38 10.12 7.67 -40.82 -0.31 9.80 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.15 1.48 7.74 -52.49 -0.41 1.07 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -33.86 340.73 -7.62 -41.47 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.89 Total: 8.11 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.93 Total: -1.99 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.01 Total: -61.46 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.86 -7.62 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732679612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds