Wall clock time and date at job start Mon Mar 30 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38358 * 120.34800 * 2 1 4 4 N 1.31919 * 121.07883 * 180.27098 * 3 2 1 5 5 C 1.31688 * 121.88465 * 0.02562 * 4 3 2 6 6 C 1.39526 * 120.56346 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.55842 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00014 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00052 * 0.02857 * 7 6 5 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46903 * 34.99514 * 10 9 7 12 12 C 1.52998 * 109.46811 * 274.99905 * 10 9 7 13 13 C 1.52997 * 109.47190 * 154.99637 * 10 9 7 14 14 C 1.53005 * 109.47511 * 295.00161 * 13 10 9 15 15 N 1.46492 * 109.47278 * 180.02562 * 14 13 10 16 16 C 1.36940 * 119.99908 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00104 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99730 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46952 * 60.00067 * 20 18 16 22 22 H 1.48500 * 109.47292 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47055 * 300.00272 * 20 18 16 24 24 C 1.38355 * 120.35066 * 180.27566 * 2 1 3 25 25 H 1.08998 * 109.47142 * 269.72301 * 1 2 3 26 26 H 1.08996 * 109.46912 * 29.72324 * 1 2 3 27 27 H 1.09000 * 109.46651 * 149.72139 * 1 2 3 28 28 H 1.08008 * 119.45884 * 0.25421 * 3 2 1 29 29 H 1.08000 * 119.71869 * 179.97438 * 5 4 3 30 30 H 0.97005 * 120.00217 * 359.97438 * 9 7 6 31 31 H 1.08994 * 109.47754 * 60.00033 * 12 10 9 32 32 H 1.09007 * 109.46644 * 180.02562 * 12 10 9 33 33 H 1.08997 * 109.47067 * 299.99508 * 12 10 9 34 34 H 1.09005 * 109.46920 * 55.00091 * 13 10 9 35 35 H 1.08996 * 109.47253 * 175.00056 * 13 10 9 36 36 H 1.09000 * 109.46525 * 300.00014 * 14 13 10 37 37 H 1.08996 * 109.46948 * 59.99708 * 14 13 10 38 38 H 0.96999 * 119.99899 * 359.97438 * 15 14 13 39 39 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.85081 * 359.70453 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 -0.0053 5 6 4.2349 0.1016 -0.0114 6 6 3.6054 -1.1435 -0.0118 7 6 4.4023 -2.3887 -0.0192 8 8 3.8434 -3.4681 -0.0199 9 7 5.7487 -2.3271 -0.0250 10 6 6.5384 -3.5610 -0.0317 11 1 6.0226 -4.3193 -0.6208 12 6 6.7138 -4.0620 1.4033 13 6 7.9117 -3.2842 -0.6467 14 6 7.7438 -2.9031 -2.1190 15 7 9.0588 -2.6387 -2.7080 16 6 9.1590 -2.2780 -4.0252 17 1 8.2686 -2.1888 -4.6300 18 6 10.4050 -2.0269 -4.5832 19 7 11.4900 -2.1351 -3.8462 20 14 10.5417 -1.5356 -6.3802 21 1 9.7864 -0.2774 -6.6082 22 1 11.9699 -1.3250 -6.7286 23 1 9.9775 -2.6130 -7.2323 24 6 2.2061 -1.1939 -0.0057 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3632 -0.8875 -0.5182 28 1 1.6629 2.1275 0.0042 29 1 5.3135 0.1562 -0.0161 30 1 6.1948 -1.4658 -0.0247 31 1 5.7355 -4.2592 1.8415 32 1 7.3018 -4.9799 1.3983 33 1 7.2296 -3.3038 1.9923 34 1 8.3909 -2.4644 -0.1116 35 1 8.5305 -4.1783 -0.5712 36 1 7.2646 -3.7230 -2.6541 37 1 7.1250 -2.0090 -2.1945 38 1 9.8585 -2.7192 -2.1650 39 1 12.3607 -1.9593 -4.2360 40 1 1.6859 -2.1403 -0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732679612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:14 Heat of formation + Delta-G solvation = -27.455591 kcal Electronic energy + Delta-G solvation = -20718.842006 eV Core-core repulsion = 17532.325851 eV Total energy + Delta-G solvation = -3186.516154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75098 -40.31586 -37.89596 -36.15609 -34.72262 -33.89139 -33.19428 -31.71941 -29.42929 -28.21240 -26.10510 -25.54764 -23.80271 -23.26600 -22.08593 -21.47762 -19.30807 -18.73145 -18.05910 -17.48701 -16.90427 -16.69371 -16.21069 -15.65198 -15.50531 -15.29023 -15.02942 -14.93815 -14.38882 -14.31033 -14.14784 -13.69856 -13.53934 -13.46742 -13.11434 -12.90837 -12.87562 -12.81541 -12.39244 -12.31617 -12.02113 -11.94789 -11.66266 -11.33510 -10.95247 -10.89962 -10.49381 -10.21743 -9.94814 -9.02286 -7.97274 -5.26380 -0.42558 0.13364 1.46364 1.49100 1.55435 1.76186 2.04664 2.54429 2.77351 3.26291 3.36200 3.60111 3.65577 3.78241 3.82101 3.90775 4.04142 4.13792 4.18388 4.37314 4.49228 4.55299 4.62940 4.74920 4.76100 4.83201 4.83988 4.93606 4.99860 5.15535 5.18791 5.22498 5.25971 5.32194 5.46596 5.49317 5.58202 6.25308 6.41822 6.80168 7.07858 7.31979 8.06951 8.31272 9.25781 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003697 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.007203 B = 7571.133399 C = 8640.125196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.504 5.504 5 C 0.123 3.877 6 C -0.194 4.194 7 C 0.564 3.436 8 O -0.574 6.574 9 N -0.706 5.706 10 C 0.151 3.849 11 H 0.073 0.927 12 C -0.153 4.153 13 C -0.119 4.119 14 C 0.153 3.847 15 N -0.745 5.745 16 C -0.252 4.252 17 H 0.070 0.930 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.033 4.033 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.191 0.809 29 H 0.170 0.830 30 H 0.410 0.590 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.007 0.993 37 H 0.021 0.979 38 H 0.376 0.624 39 H 0.253 0.747 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.715 4.421 12.841 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.040 4.040 4 N -0.212 5.212 5 C -0.034 4.034 6 C -0.199 4.199 7 C 0.351 3.649 8 O -0.454 6.454 9 N -0.357 5.357 10 C 0.047 3.953 11 H 0.091 0.909 12 C -0.211 4.211 13 C -0.157 4.157 14 C 0.026 3.974 15 N -0.388 5.388 16 C -0.383 4.383 17 H 0.088 0.912 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.801 3.199 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.059 4.059 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.208 0.792 29 H 0.187 0.813 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.208 0.792 39 H 0.062 0.938 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.698 4.487 12.673 24.681 hybrid contribution 0.613 -0.402 -0.940 1.192 sum -20.085 4.085 11.733 23.617 Atomic orbital electron populations 1.20823 0.87107 1.04565 1.03988 1.21270 0.99704 0.92736 1.00417 1.23502 0.89438 0.99194 0.91850 1.67749 1.09311 1.31036 1.13132 1.23165 1.01075 0.86575 0.92633 1.20971 0.95679 0.94268 1.09020 1.18276 0.82523 0.88463 0.75613 1.90736 1.71795 1.30925 1.51978 1.46016 1.05405 1.10727 1.73596 1.20902 0.90532 0.86171 0.97720 0.90925 1.22086 1.02031 1.02387 0.94602 1.21913 0.96004 1.03348 0.94461 1.20768 0.87109 0.96728 0.92760 1.42534 1.03957 1.83111 1.09184 1.19561 0.92724 1.37641 0.88423 0.91191 1.25542 0.95169 1.03329 1.02334 1.69790 0.97539 1.57317 1.37049 0.85240 0.76328 0.78312 0.80053 1.20353 1.21797 1.20560 1.21812 0.92228 0.99944 0.91917 0.89330 0.89034 0.90747 0.79241 0.81299 0.75292 0.93062 0.90230 0.91052 0.90121 0.89757 0.97488 0.96077 0.79162 0.93832 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.03 71.24 0.71 -0.19 16 2 C -0.14 -2.18 5.89 -19.81 -0.12 -2.29 16 3 C 0.12 1.92 10.85 84.71 0.92 2.84 16 4 N -0.50 -11.11 10.34 -194.75 -2.01 -13.12 16 5 C 0.12 2.72 10.71 85.03 0.91 3.63 16 6 C -0.19 -4.60 5.89 -19.99 -0.12 -4.72 16 7 C 0.56 15.58 7.75 86.79 0.67 16.26 16 8 O -0.57 -19.41 16.08 -3.87 -0.06 -19.47 16 9 N -0.71 -17.44 4.48 -445.43 -2.00 -19.44 16 10 C 0.15 3.94 2.57 44.99 0.12 4.05 16 11 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 12 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 13 C -0.12 -3.50 4.87 30.59 0.15 -3.36 16 14 C 0.15 6.07 6.15 86.38 0.53 6.60 16 15 N -0.74 -37.91 5.60 -343.46 -1.92 -39.84 16 16 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 19 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 20 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 C -0.03 -0.68 9.39 22.73 0.21 -0.46 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 27 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 28 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.17 3.15 6.42 -2.91 -0.02 3.13 16 30 H 0.41 8.65 6.67 -92.70 -0.62 8.03 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.02 0.84 7.75 -2.39 -0.02 0.82 16 38 H 0.38 19.99 7.67 -92.71 -0.71 19.28 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.15 2.95 7.74 -2.91 -0.02 2.93 16 Total: -1.00 -72.31 340.73 2.01 -70.30 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.28 Total: 29.19 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.98 Total: 2.66 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -5.65 Total: -131.10 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.31 2.01 -70.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732679612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.840 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds