Wall clock time and date at job start Mon Mar 30 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38358 * 120.34653 * 2 1 4 4 N 1.31930 * 121.07895 * 179.97438 * 3 2 1 5 5 C 1.31699 * 121.87703 * 0.02562 * 4 3 2 6 6 C 1.39515 * 120.56624 * 0.28451 * 5 4 3 7 7 C 1.47849 * 120.55866 * 179.70322 * 6 5 4 8 8 O 1.21549 * 120.00045 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99786 * 359.97438 * 7 6 5 10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46832 * 325.00160 * 10 9 7 12 12 C 1.52996 * 109.46984 * 85.00160 * 10 9 7 13 13 C 1.53002 * 109.47343 * 205.00390 * 10 9 7 14 14 C 1.53000 * 109.46844 * 65.00028 * 13 10 9 15 15 N 1.46504 * 109.46929 * 180.02562 * 14 13 10 16 16 C 1.36932 * 120.00232 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99949 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00188 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99826 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47468 * 90.00291 * 20 18 16 22 22 H 1.48501 * 109.47008 * 210.00058 * 20 18 16 23 23 H 1.48497 * 109.47301 * 329.99747 * 20 18 16 24 24 C 1.38353 * 120.34898 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47507 * 89.99554 * 1 2 3 26 26 H 1.09000 * 109.47427 * 209.99808 * 1 2 3 27 27 H 1.09006 * 109.47284 * 329.99883 * 1 2 3 28 28 H 1.08001 * 119.46198 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.71152 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99874 * 0.02562 * 9 7 6 31 31 H 1.09006 * 109.47073 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.47463 * 300.00041 * 12 10 9 33 33 H 1.09004 * 109.47336 * 60.00308 * 12 10 9 34 34 H 1.08994 * 109.47091 * 184.99937 * 13 10 9 35 35 H 1.09001 * 109.46898 * 305.00369 * 13 10 9 36 36 H 1.09003 * 109.47187 * 299.99539 * 14 13 10 37 37 H 1.08993 * 109.47373 * 60.00225 * 14 13 10 38 38 H 0.97005 * 119.99876 * 0.02562 * 15 14 13 39 39 H 0.97003 * 119.99814 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.85393 * 0.04207 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2349 0.1015 0.0005 6 6 3.6054 -1.1435 -0.0060 7 6 4.4023 -2.3888 -0.0125 8 8 3.8433 -3.4681 -0.0177 9 7 5.7487 -2.3272 -0.0128 10 6 6.5384 -3.5611 -0.0199 11 1 6.0254 -4.3241 0.5657 12 6 6.7068 -4.0505 -1.4596 13 6 7.9147 -3.2892 0.5907 14 6 7.7539 -2.9201 2.0668 15 7 9.0717 -2.6592 2.6513 16 6 9.1782 -2.3079 3.9705 17 1 8.2908 -2.2228 4.5800 18 6 10.4268 -2.0602 4.5241 19 7 10.5292 -1.7231 5.7923 20 14 11.9617 -2.2054 3.4694 21 1 12.2557 -0.8930 2.8399 22 1 13.1089 -2.6151 4.3186 23 1 11.7407 -3.2236 2.4113 24 6 2.2060 -1.1939 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6628 2.1275 -0.0004 29 1 5.3135 0.1561 0.0005 30 1 6.1948 -1.4658 -0.0083 31 1 7.2940 -4.9688 -1.4649 32 1 5.7263 -4.2442 -1.8946 33 1 7.2197 -3.2875 -2.0452 34 1 8.5331 -4.1827 0.5049 35 1 8.3913 -2.4651 0.0599 36 1 7.1355 -2.0265 2.1525 37 1 7.2773 -3.7441 2.5976 38 1 9.8687 -2.7346 2.1035 39 1 11.4017 -1.5504 6.1793 40 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732679613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:18 Heat of formation + Delta-G solvation = -0.122852 kcal Electronic energy + Delta-G solvation = -20762.100869 eV Core-core repulsion = 17576.769951 eV Total energy + Delta-G solvation = -3185.330918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88167 -39.36319 -36.68598 -34.60129 -33.98290 -32.79519 -31.69712 -30.67359 -28.31362 -27.61151 -25.03056 -23.82109 -23.01151 -21.52591 -21.01202 -20.49753 -18.04663 -17.51375 -17.21283 -16.64703 -15.93906 -15.26878 -14.74627 -14.53343 -14.36962 -14.06453 -13.82965 -13.60635 -13.42823 -13.30251 -13.07207 -12.93178 -12.64025 -12.58270 -12.23718 -12.07341 -11.55731 -11.25967 -10.94034 -10.76828 -10.54982 -10.33074 -10.15887 -10.06154 -9.63516 -9.60401 -9.32194 -9.10640 -8.89941 -7.25110 -5.77594 -3.13703 0.39267 0.90832 2.71459 3.00560 3.36096 3.38278 3.44194 3.59947 4.01913 4.37893 4.49682 4.57854 4.58242 4.63946 4.72445 4.85059 5.09542 5.18110 5.20604 5.22301 5.34569 5.48443 5.58167 5.59301 5.60076 5.74047 5.75421 5.84733 5.89620 5.92747 6.11329 6.18094 6.26954 6.40525 6.67892 6.72237 7.38717 7.57922 7.98541 8.07796 8.41221 9.20129 9.92198 10.11776 11.40862 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.003690 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.847341 B = 7586.454165 C = 8417.534662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C 0.119 3.881 4 N -0.482 5.482 5 C 0.130 3.870 6 C -0.180 4.180 7 C 0.565 3.435 8 O -0.537 6.537 9 N -0.713 5.713 10 C 0.146 3.854 11 H 0.093 0.907 12 C -0.161 4.161 13 C -0.140 4.140 14 C 0.157 3.843 15 N -0.757 5.757 16 C -0.246 4.246 17 H 0.089 0.911 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 2.395 -17.306 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C -0.038 4.038 4 N -0.190 5.190 5 C -0.028 4.028 6 C -0.185 4.185 7 C 0.351 3.649 8 O -0.415 6.415 9 N -0.364 5.364 10 C 0.041 3.959 11 H 0.111 0.889 12 C -0.220 4.220 13 C -0.178 4.178 14 C 0.030 3.970 15 N -0.403 5.403 16 C -0.376 4.376 17 H 0.107 0.893 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.046 4.046 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.367 2.462 -17.060 24.469 hybrid contribution 1.079 -0.414 -0.536 1.274 sum -16.288 2.049 -17.595 24.065 Atomic orbital electron populations 1.20733 0.89611 1.03523 1.02812 1.20947 0.98032 0.93773 1.02204 1.22928 0.89959 0.97704 0.93207 1.67718 1.08023 1.30962 1.12250 1.23021 1.00431 0.86812 0.92529 1.21046 0.95194 0.94911 1.07343 1.17994 0.82280 0.88285 0.76346 1.90766 1.71152 1.29595 1.50017 1.46039 1.05622 1.10405 1.74357 1.21007 0.91674 0.86464 0.96738 0.88938 1.22169 1.02165 1.01470 0.96157 1.22131 0.95170 1.02827 0.97686 1.20622 0.88591 0.97939 0.89856 1.42710 1.02464 1.85140 1.09944 1.19062 0.94691 1.38642 0.85158 0.89300 1.24690 0.97158 1.01525 0.95835 1.69708 1.23493 1.53505 1.11494 0.86516 0.84105 0.77818 0.79882 1.21067 1.21723 1.20336 1.21632 0.92471 0.98999 0.91491 0.90705 0.90977 0.90884 0.82311 0.82270 0.76308 0.91386 0.92267 0.92457 0.90084 0.91295 0.95565 0.95524 0.80689 0.93035 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.03 36.00 0.36 -0.24 16 2 C -0.15 -1.27 5.89 -104.54 -0.62 -1.89 16 3 C 0.12 1.09 10.85 -17.47 -0.19 0.91 16 4 N -0.48 -5.54 10.35 -12.91 -0.13 -5.68 16 5 C 0.13 1.44 10.71 -17.13 -0.18 1.26 16 6 C -0.18 -2.10 5.89 -104.82 -0.62 -2.72 16 7 C 0.56 7.53 7.75 -12.33 -0.10 7.43 16 8 O -0.54 -8.71 16.08 5.32 0.09 -8.63 16 9 N -0.71 -8.49 4.48 -54.75 -0.25 -8.73 16 10 C 0.15 1.82 2.57 -67.93 -0.17 1.64 16 11 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 12 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 13 C -0.14 -1.94 4.87 -26.73 -0.13 -2.07 16 14 C 0.16 2.96 6.15 -4.04 -0.02 2.94 16 15 N -0.76 -17.90 5.41 -59.91 -0.32 -18.22 16 16 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 19 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 20 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 24 C -0.02 -0.20 9.39 -38.87 -0.37 -0.57 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.16 1.46 6.42 -52.49 -0.34 1.12 16 30 H 0.40 4.08 6.67 -40.82 -0.27 3.81 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.36 8.20 5.53 -40.82 -0.23 7.98 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.15 1.46 7.74 -52.49 -0.41 1.05 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -34.86 337.61 -7.26 -42.12 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.85 Total: 7.40 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.94 Total: -1.85 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.07 Total: -61.44 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.86 -7.26 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732679613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.995 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds