Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38358 * 120.34653 * 2 1 4 4 N 1.31930 * 121.07895 * 179.97438 * 3 2 1 5 5 C 1.31699 * 121.87703 * 0.02562 * 4 3 2 6 6 C 1.39515 * 120.56624 * 0.28451 * 5 4 3 7 7 C 1.47849 * 120.55866 * 179.70322 * 6 5 4 8 8 O 1.21549 * 120.00045 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99786 * 359.97438 * 7 6 5 10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46832 * 325.00160 * 10 9 7 12 12 C 1.52996 * 109.46984 * 85.00160 * 10 9 7 13 13 C 1.53002 * 109.47343 * 205.00390 * 10 9 7 14 14 C 1.53000 * 109.46844 * 65.00028 * 13 10 9 15 15 N 1.46504 * 109.46929 * 180.02562 * 14 13 10 16 16 C 1.36932 * 120.00232 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99949 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00188 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99826 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47468 * 90.00291 * 20 18 16 22 22 H 1.48501 * 109.47008 * 210.00058 * 20 18 16 23 23 H 1.48497 * 109.47301 * 329.99747 * 20 18 16 24 24 C 1.38353 * 120.34898 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47507 * 89.99554 * 1 2 3 26 26 H 1.09000 * 109.47427 * 209.99808 * 1 2 3 27 27 H 1.09006 * 109.47284 * 329.99883 * 1 2 3 28 28 H 1.08001 * 119.46198 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.71152 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99874 * 0.02562 * 9 7 6 31 31 H 1.09006 * 109.47073 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.47463 * 300.00041 * 12 10 9 33 33 H 1.09004 * 109.47336 * 60.00308 * 12 10 9 34 34 H 1.08994 * 109.47091 * 184.99937 * 13 10 9 35 35 H 1.09001 * 109.46898 * 305.00369 * 13 10 9 36 36 H 1.09003 * 109.47187 * 299.99539 * 14 13 10 37 37 H 1.08993 * 109.47373 * 60.00225 * 14 13 10 38 38 H 0.97005 * 119.99876 * 0.02562 * 15 14 13 39 39 H 0.97003 * 119.99814 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.85393 * 0.04207 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2349 0.1015 0.0005 6 6 3.6054 -1.1435 -0.0060 7 6 4.4023 -2.3888 -0.0125 8 8 3.8433 -3.4681 -0.0177 9 7 5.7487 -2.3272 -0.0128 10 6 6.5384 -3.5611 -0.0199 11 1 6.0254 -4.3241 0.5657 12 6 6.7068 -4.0505 -1.4596 13 6 7.9147 -3.2892 0.5907 14 6 7.7539 -2.9201 2.0668 15 7 9.0717 -2.6592 2.6513 16 6 9.1782 -2.3079 3.9705 17 1 8.2908 -2.2228 4.5800 18 6 10.4268 -2.0602 4.5241 19 7 10.5292 -1.7231 5.7923 20 14 11.9617 -2.2054 3.4694 21 1 12.2557 -0.8930 2.8399 22 1 13.1089 -2.6151 4.3186 23 1 11.7407 -3.2236 2.4113 24 6 2.2060 -1.1939 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6628 2.1275 -0.0004 29 1 5.3135 0.1561 0.0005 30 1 6.1948 -1.4658 -0.0083 31 1 7.2940 -4.9688 -1.4649 32 1 5.7263 -4.2442 -1.8946 33 1 7.2197 -3.2875 -2.0452 34 1 8.5331 -4.1827 0.5049 35 1 8.3913 -2.4651 0.0599 36 1 7.1355 -2.0265 2.1525 37 1 7.2773 -3.7441 2.5976 38 1 9.8687 -2.7346 2.1035 39 1 11.4017 -1.5504 6.1793 40 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732679613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = -24.878706 kcal Electronic energy + Delta-G solvation = -20763.174363 eV Core-core repulsion = 17576.769951 eV Total energy + Delta-G solvation = -3186.404412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75189 -40.32023 -37.97303 -36.25538 -34.72595 -33.94178 -33.38194 -31.86830 -29.74287 -28.21657 -26.05184 -25.40763 -23.80014 -23.16782 -22.16479 -21.48510 -19.74987 -18.79454 -18.06779 -17.51409 -16.90893 -16.61431 -16.24187 -15.83236 -15.64069 -15.20344 -15.04857 -14.83565 -14.40253 -14.35182 -14.15476 -13.89918 -13.60940 -13.47242 -13.33541 -12.97781 -12.95666 -12.81989 -12.40335 -12.23559 -12.01035 -11.83911 -11.76340 -11.34221 -10.99004 -10.90169 -10.49659 -10.22192 -9.95037 -9.32461 -8.04222 -5.39200 -0.42778 0.13184 1.38542 1.43582 1.51012 1.75890 2.04761 2.48565 2.77181 3.25774 3.27038 3.44359 3.64109 3.77932 3.81173 3.90435 3.99965 4.07765 4.17872 4.24213 4.48583 4.53475 4.59135 4.74108 4.75040 4.82653 4.83612 4.93371 4.99948 5.14660 5.16982 5.22063 5.23868 5.31579 5.48751 5.57850 5.72877 6.19384 6.41476 6.79897 7.06482 7.08082 7.80943 8.02513 9.17522 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.003690 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.847341 B = 7586.454165 C = 8417.534662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.505 5.505 5 C 0.123 3.877 6 C -0.195 4.195 7 C 0.564 3.436 8 O -0.574 6.574 9 N -0.707 5.707 10 C 0.149 3.851 11 H 0.071 0.929 12 C -0.152 4.152 13 C -0.124 4.124 14 C 0.154 3.846 15 N -0.757 5.757 16 C -0.242 4.242 17 H 0.048 0.952 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.246 1.246 24 C -0.033 4.033 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.190 0.810 29 H 0.172 0.828 30 H 0.410 0.590 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.010 0.990 38 H 0.369 0.631 39 H 0.259 0.741 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.202 2.911 -19.858 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.040 4.040 4 N -0.213 5.213 5 C -0.034 4.034 6 C -0.200 4.200 7 C 0.351 3.649 8 O -0.454 6.454 9 N -0.358 5.358 10 C 0.045 3.955 11 H 0.090 0.910 12 C -0.211 4.211 13 C -0.162 4.162 14 C 0.027 3.973 15 N -0.403 5.403 16 C -0.373 4.373 17 H 0.066 0.934 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.789 3.211 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.170 1.170 24 C -0.060 4.060 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.207 0.793 29 H 0.189 0.811 30 H 0.248 0.752 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.214 2.979 -19.660 26.301 hybrid contribution 0.859 -0.535 0.328 1.064 sum -16.355 2.445 -19.332 25.440 Atomic orbital electron populations 1.20822 0.87147 1.04540 1.03993 1.21265 0.99698 0.92765 1.00444 1.23497 0.89471 0.99175 0.91864 1.67759 1.09285 1.31074 1.13132 1.23185 1.01132 0.86537 0.92589 1.20985 0.95665 0.94356 1.09005 1.18266 0.82620 0.88398 0.75599 1.90739 1.71829 1.30930 1.51930 1.46012 1.05349 1.10811 1.73657 1.20927 0.90608 0.86185 0.97827 0.91041 1.22086 1.02043 1.02533 0.94404 1.21992 0.96239 1.04032 0.93903 1.20768 0.86349 0.97195 0.92938 1.42663 1.04585 1.84836 1.08206 1.19013 0.93451 1.37808 0.87033 0.93356 1.25627 1.01122 1.01700 0.97307 1.69911 1.24361 1.55359 1.13977 0.85292 0.78439 0.78896 0.78427 1.19988 1.22400 1.17010 1.21817 0.92310 0.99910 0.91932 0.89289 0.90784 0.89075 0.79290 0.81118 0.75203 0.90051 0.93313 0.90821 0.88945 0.89240 0.95767 0.97167 0.79695 0.93240 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.03 71.23 0.71 -0.22 16 2 C -0.14 -2.21 5.89 -19.81 -0.12 -2.32 16 3 C 0.12 1.94 10.85 84.71 0.92 2.86 16 4 N -0.50 -11.07 10.35 -194.75 -2.01 -13.08 16 5 C 0.12 2.67 10.71 85.02 0.91 3.59 16 6 C -0.19 -4.56 5.89 -19.99 -0.12 -4.68 16 7 C 0.56 15.18 7.75 86.79 0.67 15.85 16 8 O -0.57 -19.09 16.08 -3.87 -0.06 -19.15 16 9 N -0.71 -16.36 4.48 -445.41 -2.00 -18.36 16 10 C 0.15 3.53 2.57 44.99 0.12 3.65 16 11 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.15 -2.90 9.48 71.98 0.68 -2.22 16 13 C -0.12 -3.14 4.87 30.59 0.15 -2.99 16 14 C 0.15 5.71 6.15 86.38 0.53 6.24 16 15 N -0.76 -34.94 5.41 -343.45 -1.86 -36.79 16 16 C -0.24 -14.07 10.47 84.03 0.88 -13.19 16 17 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 19 N -0.99 -63.95 13.97 21.65 0.30 -63.65 16 20 Si 0.96 44.81 27.74 68.60 1.90 46.71 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 24 C -0.03 -0.69 9.39 22.73 0.21 -0.48 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 27 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 28 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.17 3.03 6.42 -2.91 -0.02 3.01 16 30 H 0.41 7.87 6.67 -92.70 -0.62 7.25 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.37 15.72 5.53 -92.70 -0.51 15.21 16 39 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.15 2.96 7.74 -2.91 -0.02 2.93 16 Total: -1.00 -77.21 337.61 2.16 -75.05 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.14 Total: 26.66 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.02 Total: 2.62 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -5.57 Total: -131.88 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Total: -77.21 2.16 -75.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732679613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.173 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds