Wall clock time and date at job start Mon Mar 30 2020 01:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38221 * 120.42213 * 2 1 4 4 N 1.31861 * 120.76536 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72133 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41663 * 180.27133 * 6 5 4 8 8 C 1.50699 * 109.47089 * 269.72422 * 7 6 5 9 9 O 1.21284 * 120.00452 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00289 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00566 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46469 * 34.99668 * 11 10 8 13 13 C 1.52992 * 109.47003 * 274.99771 * 11 10 8 14 14 C 1.52997 * 109.47028 * 154.99787 * 11 10 8 15 15 N 1.46503 * 109.47181 * 304.99848 * 14 11 10 16 16 C 1.36942 * 120.00029 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99950 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99937 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47373 * 90.00401 * 20 18 16 22 22 H 1.48501 * 109.47226 * 210.00329 * 20 18 16 23 23 H 1.48498 * 109.47027 * 330.00083 * 20 18 16 24 24 C 1.38629 * 120.41551 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46565 * 270.01978 * 1 2 3 26 26 H 1.08996 * 109.47158 * 30.01160 * 1 2 3 27 27 H 1.08991 * 109.47818 * 150.01679 * 1 2 3 28 28 H 1.07992 * 119.62125 * 359.96565 * 3 2 1 29 29 H 1.08003 * 119.61498 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47292 * 29.72288 * 7 6 5 31 31 H 1.09002 * 109.46937 * 149.72774 * 7 6 5 32 32 H 0.97008 * 119.99789 * 359.97438 * 10 8 7 33 33 H 1.09008 * 109.46963 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47716 * 299.99942 * 13 11 10 35 35 H 1.09003 * 109.47420 * 60.00028 * 13 11 10 36 36 H 1.08992 * 109.47509 * 65.00359 * 14 11 10 37 37 H 1.08999 * 109.46960 * 185.00292 * 14 11 10 38 38 H 0.96995 * 120.00018 * 0.02562 * 15 14 11 39 39 H 0.97002 * 119.99507 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.79273 * 0.03913 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1472 -0.0005 7 6 4.4026 -2.4194 0.0057 8 6 4.6731 -2.8495 -1.4131 9 8 4.2511 -2.1885 -2.3382 10 7 5.3832 -3.9695 -1.6540 11 6 5.6458 -4.3880 -3.0331 12 1 5.7835 -3.5070 -3.6601 13 6 4.4604 -5.2037 -3.5530 14 6 6.9120 -5.2458 -3.0735 15 7 8.0218 -4.5072 -2.4658 16 6 9.2640 -5.0785 -2.3894 17 1 9.4255 -6.0736 -2.7766 18 6 10.3154 -4.3789 -1.8131 19 7 11.5092 -4.9282 -1.7392 20 14 10.0359 -2.6579 -1.1426 21 1 9.6361 -2.7418 0.2850 22 1 11.2899 -1.8712 -1.2601 23 1 8.9596 -1.9927 -1.9199 24 6 2.2088 -1.1955 0.0005 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3634 -0.8900 -0.5135 28 1 1.6676 2.1276 -0.0006 29 1 5.3047 0.1283 0.0014 30 1 5.3482 -2.2469 0.5196 31 1 3.8455 -3.2010 0.5223 32 1 5.7204 -4.4985 -0.9141 33 1 4.6556 -5.5147 -4.5794 34 1 4.3226 -6.0846 -2.9260 35 1 3.5583 -4.5925 -3.5243 36 1 6.7433 -6.1690 -2.5192 37 1 7.1572 -5.4831 -4.1087 38 1 7.8767 -3.6136 -2.1177 39 1 12.2439 -4.4392 -1.3369 40 1 1.6886 -2.1420 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732965602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:38 Heat of formation + Delta-G solvation = -0.951308 kcal Electronic energy + Delta-G solvation = -21071.120541 eV Core-core repulsion = 17885.753699 eV Total energy + Delta-G solvation = -3185.366842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60669 -39.44347 -36.42639 -33.79950 -33.76249 -33.66797 -31.55564 -30.45054 -28.03945 -27.45558 -26.00702 -23.47343 -22.52605 -21.90147 -20.74223 -20.16748 -17.83072 -17.12043 -16.95619 -16.82674 -16.01250 -15.03127 -14.67217 -14.58972 -14.43958 -14.06989 -13.70703 -13.37139 -13.19350 -13.00138 -12.87256 -12.76560 -12.63603 -12.50061 -12.42722 -12.12088 -11.89038 -11.57006 -11.13017 -10.92574 -10.54411 -10.19496 -9.96957 -9.65869 -9.62043 -9.54690 -8.99845 -8.91607 -8.87970 -7.31719 -5.82871 -3.19422 0.95807 1.16095 2.72801 3.26879 3.32014 3.37640 3.42127 3.74318 4.25236 4.51387 4.53721 4.54941 4.80076 4.82648 4.87325 4.95609 5.06591 5.15850 5.27936 5.31349 5.33106 5.44802 5.49181 5.52767 5.63334 5.75619 5.78463 5.87931 6.00347 6.03206 6.10096 6.24822 6.34017 6.54416 6.58529 6.77646 7.66525 7.87250 7.92236 8.34249 8.36530 9.14296 9.86430 10.05756 11.35293 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.004377 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.012126 B = 6395.737165 C = 7473.342929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.093 3.907 4 N -0.480 5.480 5 C 0.107 3.893 6 C -0.106 4.106 7 C -0.103 4.103 8 C 0.513 3.487 9 O -0.539 6.539 10 N -0.716 5.716 11 C 0.129 3.871 12 H 0.086 0.914 13 C -0.156 4.156 14 C 0.149 3.851 15 N -0.755 5.755 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.064 4.064 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.405 0.595 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.459 5.483 5.357 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.064 4.064 4 N -0.187 5.187 5 C -0.050 4.050 6 C -0.109 4.109 7 C -0.144 4.144 8 C 0.299 3.701 9 O -0.416 6.416 10 N -0.367 5.367 11 C 0.025 3.975 12 H 0.105 0.895 13 C -0.215 4.215 14 C 0.021 3.979 15 N -0.401 5.401 16 C -0.377 4.377 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.090 4.090 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.240 0.760 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.108 6.593 4.645 23.533 hybrid contribution -0.172 0.087 0.799 0.822 sum -22.281 6.680 5.444 23.889 Atomic orbital electron populations 1.20700 0.90267 1.03146 1.02410 1.20878 0.97492 0.94111 1.01712 1.22638 0.90031 0.97369 0.96394 1.67684 1.08322 1.31086 1.11652 1.22626 1.00320 0.87115 0.94929 1.20289 0.94232 0.95477 1.00852 1.20650 1.02073 0.95960 0.95699 1.20403 0.78232 0.80616 0.90853 1.90712 1.51181 1.53889 1.45844 1.46078 1.54842 1.26276 1.09543 1.21309 0.95041 0.98610 0.82563 0.89549 1.22078 0.98113 0.99913 1.01398 1.20961 0.85463 0.93721 0.97713 1.42706 1.07171 1.17143 1.73124 1.19046 0.84585 1.00755 1.33358 0.89126 1.24667 0.95400 0.97897 1.00952 1.69698 1.00474 1.37753 1.50036 0.86595 0.77256 0.85920 0.79094 1.20956 1.21571 1.20329 1.21298 0.93214 0.98210 0.96252 0.91004 0.91198 0.91360 0.83045 0.82944 0.87324 0.87652 0.76038 0.91500 0.92407 0.92492 0.94866 0.94042 0.80449 0.92968 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.04 36.01 0.36 -0.37 16 2 C -0.14 -1.43 5.90 -104.48 -0.62 -2.04 16 3 C 0.09 1.06 10.86 -17.55 -0.19 0.87 16 4 N -0.48 -6.69 10.36 -13.25 -0.14 -6.82 16 5 C 0.11 1.45 10.86 -17.55 -0.19 1.25 16 6 C -0.11 -1.29 4.39 -104.48 -0.46 -1.75 16 7 C -0.10 -1.11 5.86 -29.03 -0.17 -1.28 16 8 C 0.51 7.39 7.79 -10.99 -0.09 7.30 16 9 O -0.54 -9.77 15.70 5.55 0.09 -9.68 16 10 N -0.72 -10.03 4.52 -53.81 -0.24 -10.28 16 11 C 0.13 1.99 2.73 -67.94 -0.19 1.80 16 12 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 13 C -0.16 -1.96 9.48 37.15 0.35 -1.61 16 14 C 0.15 2.69 5.82 -4.04 -0.02 2.67 16 15 N -0.76 -17.25 5.24 -59.91 -0.31 -17.57 16 16 C -0.25 -6.84 10.47 -15.06 -0.16 -6.99 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 20 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 24 C -0.06 -0.69 9.54 -39.28 -0.37 -1.07 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 31 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.40 5.09 8.60 -40.82 -0.35 4.74 16 33 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.36 8.26 5.20 -40.82 -0.21 8.05 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -34.66 340.65 -7.28 -41.94 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.03 Total: 9.38 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.84 Total: -1.12 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.08 Total: -62.80 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.66 -7.28 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732965602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.992 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds