Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38221 * 120.42213 * 2 1 4 4 N 1.31861 * 120.76536 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72133 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41663 * 180.27133 * 6 5 4 8 8 C 1.50699 * 109.47089 * 269.72422 * 7 6 5 9 9 O 1.21284 * 120.00452 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00289 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00566 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46469 * 34.99668 * 11 10 8 13 13 C 1.52992 * 109.47003 * 274.99771 * 11 10 8 14 14 C 1.52997 * 109.47028 * 154.99787 * 11 10 8 15 15 N 1.46503 * 109.47181 * 304.99848 * 14 11 10 16 16 C 1.36942 * 120.00029 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99950 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99937 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47373 * 90.00401 * 20 18 16 22 22 H 1.48501 * 109.47226 * 210.00329 * 20 18 16 23 23 H 1.48498 * 109.47027 * 330.00083 * 20 18 16 24 24 C 1.38629 * 120.41551 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46565 * 270.01978 * 1 2 3 26 26 H 1.08996 * 109.47158 * 30.01160 * 1 2 3 27 27 H 1.08991 * 109.47818 * 150.01679 * 1 2 3 28 28 H 1.07992 * 119.62125 * 359.96565 * 3 2 1 29 29 H 1.08003 * 119.61498 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47292 * 29.72288 * 7 6 5 31 31 H 1.09002 * 109.46937 * 149.72774 * 7 6 5 32 32 H 0.97008 * 119.99789 * 359.97438 * 10 8 7 33 33 H 1.09008 * 109.46963 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47716 * 299.99942 * 13 11 10 35 35 H 1.09003 * 109.47420 * 60.00028 * 13 11 10 36 36 H 1.08992 * 109.47509 * 65.00359 * 14 11 10 37 37 H 1.08999 * 109.46960 * 185.00292 * 14 11 10 38 38 H 0.96995 * 120.00018 * 0.02562 * 15 14 11 39 39 H 0.97002 * 119.99507 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.79273 * 0.03913 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1472 -0.0005 7 6 4.4026 -2.4194 0.0057 8 6 4.6731 -2.8495 -1.4131 9 8 4.2511 -2.1885 -2.3382 10 7 5.3832 -3.9695 -1.6540 11 6 5.6458 -4.3880 -3.0331 12 1 5.7835 -3.5070 -3.6601 13 6 4.4604 -5.2037 -3.5530 14 6 6.9120 -5.2458 -3.0735 15 7 8.0218 -4.5072 -2.4658 16 6 9.2640 -5.0785 -2.3894 17 1 9.4255 -6.0736 -2.7766 18 6 10.3154 -4.3789 -1.8131 19 7 11.5092 -4.9282 -1.7392 20 14 10.0359 -2.6579 -1.1426 21 1 9.6361 -2.7418 0.2850 22 1 11.2899 -1.8712 -1.2601 23 1 8.9596 -1.9927 -1.9199 24 6 2.2088 -1.1955 0.0005 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3634 -0.8900 -0.5135 28 1 1.6676 2.1276 -0.0006 29 1 5.3047 0.1283 0.0014 30 1 5.3482 -2.2469 0.5196 31 1 3.8455 -3.2010 0.5223 32 1 5.7204 -4.4985 -0.9141 33 1 4.6556 -5.5147 -4.5794 34 1 4.3226 -6.0846 -2.9260 35 1 3.5583 -4.5925 -3.5243 36 1 6.7433 -6.1690 -2.5192 37 1 7.1572 -5.4831 -4.1087 38 1 7.8767 -3.6136 -2.1177 39 1 12.2439 -4.4392 -1.3369 40 1 1.6886 -2.1420 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732965602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = -25.460920 kcal Electronic energy + Delta-G solvation = -21072.183358 eV Core-core repulsion = 17885.753699 eV Total energy + Delta-G solvation = -3186.429659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52117 -40.53241 -37.84867 -35.52161 -34.61817 -34.50593 -33.32003 -31.89025 -28.89348 -28.16224 -27.63664 -24.43865 -24.07431 -23.12870 -21.92065 -21.25100 -19.77493 -18.16029 -17.92247 -17.69691 -17.25197 -16.68788 -16.00245 -15.83995 -15.48351 -15.22560 -14.84747 -14.67532 -14.25821 -14.14548 -13.99296 -13.94509 -13.71657 -13.53233 -13.37284 -13.19733 -13.06639 -12.86840 -12.58096 -12.33393 -12.21973 -11.90973 -11.76101 -11.10670 -10.98731 -10.51342 -10.42964 -10.08172 -9.75344 -9.33110 -8.04609 -5.38112 0.10726 0.32343 1.34484 1.38870 1.44942 1.64008 2.22237 2.45343 2.84922 3.27434 3.44472 3.54810 3.68410 3.82382 3.87927 4.03181 4.05141 4.06301 4.23875 4.27905 4.43082 4.44141 4.60421 4.75679 4.79982 4.83711 4.85285 4.90586 4.93469 5.10723 5.18836 5.24361 5.29768 5.31607 5.55800 5.74910 5.78476 6.19165 6.58129 6.99974 7.05408 7.26430 7.80817 7.99032 9.16774 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.004377 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.012126 B = 6395.737165 C = 7473.342929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C 0.077 3.923 4 N -0.511 5.511 5 C 0.078 3.922 6 C -0.114 4.114 7 C -0.096 4.096 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.712 5.712 11 C 0.138 3.862 12 H 0.061 0.939 13 C -0.146 4.146 14 C 0.148 3.852 15 N -0.757 5.757 16 C -0.232 4.232 17 H 0.063 0.937 18 C -0.059 4.059 19 N -0.981 5.981 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.073 4.073 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.414 0.586 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.212 5.569 6.348 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.080 4.080 4 N -0.219 5.219 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.033 3.967 12 H 0.079 0.921 13 C -0.204 4.204 14 C 0.022 3.978 15 N -0.403 5.403 16 C -0.363 4.363 17 H 0.081 0.919 18 C -0.251 4.251 19 N -0.632 5.632 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.193 1.193 24 C -0.099 4.099 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.191 0.809 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.250 0.750 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.198 0.802 39 H 0.067 0.933 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.909 6.654 5.644 26.393 hybrid contribution 0.612 -0.006 0.415 0.740 sum -24.297 6.648 6.059 25.908 Atomic orbital electron populations 1.20773 0.87676 1.04077 1.03715 1.21277 0.99345 0.93448 0.99849 1.23111 0.89517 0.99045 0.96302 1.67632 1.09757 1.31749 1.12750 1.22737 1.00507 0.87956 0.96624 1.20440 0.95084 0.95359 1.00792 1.20696 1.03134 0.96346 0.93406 1.20986 0.77226 0.79824 0.91932 1.90698 1.52857 1.55010 1.47475 1.46050 1.54693 1.26486 1.09204 1.21098 0.94848 0.97475 0.83305 0.92054 1.21984 0.96310 0.99905 1.02230 1.21125 0.85154 0.94292 0.97263 1.42706 1.06782 1.17438 1.73397 1.19042 0.86386 0.99552 1.31321 0.91945 1.25421 0.95171 1.02134 1.02337 1.69868 1.01583 1.39646 1.52087 0.85514 0.76799 0.80712 0.79347 1.19037 1.22629 1.19268 1.21676 0.92939 0.99535 0.95708 0.89351 0.90131 0.90598 0.80892 0.83350 0.86114 0.84081 0.74973 0.90552 0.90604 0.92825 0.93360 0.94235 0.80245 0.93307 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.04 71.24 0.72 -0.39 16 2 C -0.14 -2.51 5.90 -19.78 -0.12 -2.63 16 3 C 0.08 1.67 10.86 84.68 0.92 2.59 16 4 N -0.51 -14.15 10.36 -195.85 -2.03 -16.18 16 5 C 0.08 2.09 10.86 84.67 0.92 3.01 16 6 C -0.11 -2.60 4.39 -19.77 -0.09 -2.69 16 7 C -0.10 -1.81 5.86 29.10 0.17 -1.64 16 8 C 0.51 13.77 7.79 87.66 0.68 14.45 16 9 O -0.58 -20.50 15.70 -3.04 -0.05 -20.55 16 10 N -0.71 -18.36 4.52 -442.55 -2.00 -20.36 16 11 C 0.14 4.00 2.73 44.99 0.12 4.13 16 12 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 13 C -0.15 -3.29 9.48 71.98 0.68 -2.61 16 14 C 0.15 5.12 5.82 86.38 0.50 5.62 16 15 N -0.76 -33.72 5.24 -343.46 -1.80 -35.52 16 16 C -0.23 -12.82 10.47 84.03 0.88 -11.94 16 17 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 18 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 19 N -0.98 -61.99 13.97 21.65 0.30 -61.69 16 20 Si 0.95 45.14 27.74 68.60 1.90 47.04 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.27 -12.11 6.52 99.48 0.65 -11.46 16 24 C -0.07 -1.42 9.54 22.47 0.21 -1.20 16 25 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.12 2.02 8.09 -2.39 -0.02 2.00 16 31 H 0.14 1.63 8.09 -2.39 -0.02 1.61 16 32 H 0.41 9.22 8.60 -92.70 -0.80 8.42 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.36 15.98 5.20 -92.71 -0.48 15.50 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -76.11 340.65 2.11 -73.99 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.29 Total: 29.50 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.07 Total: 3.76 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -5.52 Total: -133.75 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -76.11 2.11 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732965602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.534 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds