Wall clock time and date at job start Mon Mar 30 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35455 * 125.56189 * 2 1 4 4 C 1.39833 * 107.86113 * 180.02562 * 3 2 1 5 5 C 1.37867 * 107.08985 * 0.02562 * 4 3 2 6 6 C 1.46680 * 126.23725 * 180.02562 * 5 4 3 7 7 O 1.21696 * 119.99592 * 353.16199 * 6 5 4 8 8 N 1.34772 * 119.99955 * 173.16892 * 6 5 4 9 9 C 1.46505 * 119.99803 * 184.43939 * 8 6 5 10 10 C 1.52998 * 109.47393 * 184.33964 * 9 8 6 11 11 N 1.46498 * 115.54951 * 80.36050 * 10 9 8 12 12 C 1.36943 * 119.99832 * 57.25209 * 11 10 9 13 13 H 1.07996 * 119.99819 * 5.68230 * 12 11 10 14 14 C 1.38813 * 120.00137 * 185.67618 * 12 11 10 15 15 N 1.31619 * 119.99989 * 354.65837 * 14 12 11 16 16 Si 1.86793 * 119.99912 * 174.65497 * 14 12 11 17 17 H 1.48500 * 109.47256 * 275.01418 * 16 14 12 18 18 H 1.48496 * 109.47295 * 35.01680 * 16 14 12 19 19 H 1.48506 * 109.47077 * 155.01716 * 16 14 12 20 20 C 1.52998 * 117.49956 * 226.03767 * 10 9 8 21 21 C 1.52995 * 117.49676 * 294.69809 * 10 9 8 22 22 N 1.35528 * 125.56608 * 180.34800 * 2 1 3 23 23 C 1.46508 * 125.67817 * 0.02562 * 22 2 1 24 24 H 1.08992 * 109.46994 * 89.97647 * 1 2 3 25 25 H 1.09003 * 109.46950 * 209.98019 * 1 2 3 26 26 H 1.09003 * 109.47067 * 329.97969 * 1 2 3 27 27 H 1.08003 * 126.06749 * 0.06814 * 3 2 1 28 28 H 1.08007 * 126.45653 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00746 * 4.44204 * 8 6 5 30 30 H 1.08997 * 109.47221 * 64.33851 * 9 8 6 31 31 H 1.09001 * 109.46887 * 304.34020 * 9 8 6 32 32 H 0.96998 * 120.00387 * 237.24899 * 11 10 9 33 33 H 0.96996 * 120.00189 * 179.97438 * 15 14 12 34 34 H 1.09005 * 117.49731 * 215.00697 * 20 10 9 35 35 H 1.08997 * 117.49783 * 0.02562 * 20 10 9 36 36 H 1.09002 * 117.50240 * 359.97090 * 21 10 9 37 37 H 1.09004 * 117.50400 * 144.97669 * 21 10 9 38 38 H 1.09001 * 109.46748 * 255.61817 * 23 22 2 39 39 H 1.08997 * 109.46955 * 15.61851 * 23 22 2 40 40 H 1.08998 * 109.46923 * 135.61498 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6123 -0.7018 -0.0015 6 6 4.7860 -1.5815 -0.0019 7 8 5.9005 -1.1088 -0.1268 8 7 4.6303 -2.9130 0.1360 9 6 5.8059 -3.7818 0.2334 10 6 5.3575 -5.2441 0.2735 11 7 5.0274 -5.8395 -1.0237 12 6 5.9598 -5.8562 -2.0266 13 1 6.9661 -5.5147 -1.8340 14 6 5.6116 -6.3123 -3.2906 15 7 4.4180 -6.8262 -3.4990 16 14 6.8370 -6.1964 -4.6956 17 1 6.7546 -4.8490 -5.3145 18 1 8.2097 -6.4189 -4.1749 19 1 6.5207 -7.2293 -5.7147 20 6 6.0002 -6.1515 1.3244 21 6 4.5464 -5.7012 1.4875 22 7 2.2953 -1.1024 -0.0067 23 6 1.8243 -2.4897 -0.0157 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 1.9545 2.1269 0.0010 28 1 4.5025 1.3092 -0.0004 29 1 3.7399 -3.2963 0.1707 30 1 6.3576 -3.5459 1.1433 31 1 6.4482 -3.6224 -0.6327 32 1 4.1485 -6.2220 -1.1723 33 1 4.1745 -7.1445 -4.3823 34 1 6.1776 -7.1916 1.0505 35 1 6.7421 -5.7067 1.9875 36 1 4.3325 -4.9604 2.2579 37 1 3.7669 -6.4448 1.3210 38 1 1.9488 -2.9220 0.9772 39 1 0.7704 -2.5137 -0.2929 40 1 2.4031 -3.0652 -0.7379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733239507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:28 Heat of formation + Delta-G solvation = 53.881081 kcal Electronic energy + Delta-G solvation = -21666.708921 eV Core-core repulsion = 18483.719789 eV Total energy + Delta-G solvation = -3182.989132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44108 -38.95521 -37.43901 -34.20369 -33.12858 -32.57248 -31.74751 -29.77287 -27.62999 -26.68988 -25.57652 -23.94759 -22.12033 -21.38570 -20.31304 -19.58919 -18.90473 -17.46940 -17.15780 -15.86251 -15.64755 -15.38839 -15.00359 -14.50502 -14.31949 -14.01291 -13.74169 -13.37946 -13.37394 -13.07711 -12.89453 -12.54667 -12.35398 -12.17279 -11.89241 -11.81860 -11.79063 -11.07291 -11.03567 -10.90398 -10.35185 -10.29008 -9.83664 -9.80321 -9.46222 -8.89114 -8.74283 -8.64649 -7.96214 -7.10951 -5.89788 -3.19358 1.59989 2.71857 2.77264 3.39967 3.46045 3.46496 3.47505 3.66376 4.37935 4.54947 4.60618 4.64797 4.93380 4.97559 5.05017 5.17775 5.25322 5.33443 5.37641 5.39901 5.48774 5.56018 5.61351 5.67764 5.76786 5.99442 6.14872 6.15951 6.28763 6.37521 6.48665 6.62560 6.69981 6.78038 6.87150 7.04703 7.19491 7.66079 7.84813 8.28615 8.51641 9.40451 9.92033 10.27543 11.32136 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.004990 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.447237 B = 5610.285382 C = 5967.735066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.039 3.961 3 C -0.211 4.211 4 C -0.113 4.113 5 C -0.049 4.049 6 C 0.583 3.417 7 O -0.538 6.538 8 N -0.717 5.717 9 C 0.147 3.853 10 C 0.131 3.869 11 N -0.687 5.687 12 C -0.241 4.241 13 H 0.074 0.926 14 C -0.007 4.007 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.287 1.287 18 H -0.280 1.280 19 H -0.291 1.291 20 C -0.192 4.192 21 C -0.192 4.192 22 N -0.425 5.425 23 C 0.050 3.950 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.395 0.605 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 10.006 10.384 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.235 4.235 4 C -0.139 4.139 5 C -0.161 4.161 6 C 0.371 3.629 7 O -0.415 6.415 8 N -0.371 5.371 9 C 0.022 3.978 10 C 0.036 3.964 11 N -0.326 5.326 12 C -0.371 4.371 13 H 0.092 0.908 14 C -0.203 4.203 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.215 1.215 18 H -0.206 1.206 19 H -0.217 1.217 20 C -0.233 4.233 21 C -0.230 4.230 22 N -0.101 5.101 23 C -0.092 4.092 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.234 0.766 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.330 9.913 10.131 16.440 hybrid contribution -0.094 -0.466 -0.905 1.022 sum -8.425 9.446 9.226 15.663 Atomic orbital electron populations 1.20384 0.87968 1.03283 1.02859 1.20504 0.93623 0.85929 1.07643 1.20602 0.92445 0.97610 1.12849 1.21232 0.97540 0.91762 1.03357 1.20567 0.82647 0.94674 1.18201 1.17057 0.87329 0.81671 0.76887 1.90808 1.24595 1.75530 1.50615 1.46282 1.10947 1.06083 1.73808 1.21227 0.87132 0.87638 1.01834 1.20177 1.01547 0.90389 0.84239 1.41796 1.15444 1.68202 1.07181 1.19160 0.92369 1.36686 0.88907 0.90832 1.24754 0.96871 1.01127 0.97563 1.69657 1.19957 1.45990 1.22248 0.86214 0.80447 0.77372 0.82254 1.21463 1.20562 1.21735 1.23444 0.94152 1.01632 1.04076 1.23097 0.95630 1.03855 1.00420 1.43952 1.05356 1.06138 1.54691 1.22369 1.02674 0.80100 1.04032 0.90771 0.91648 0.89966 0.84167 0.83615 0.76609 0.92293 0.89833 0.77829 0.93365 0.88629 0.89831 0.89522 0.88990 0.89957 0.88491 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.81 36.01 0.35 -0.31 16 2 C 0.04 0.46 6.87 -81.95 -0.56 -0.10 16 3 C -0.21 -2.62 10.71 -39.98 -0.43 -3.05 16 4 C -0.11 -1.69 10.66 -39.12 -0.42 -2.10 16 5 C -0.05 -0.80 6.88 -81.98 -0.56 -1.36 16 6 C 0.58 10.92 7.77 -12.85 -0.10 10.82 16 7 O -0.54 -11.76 16.88 5.19 0.09 -11.68 16 8 N -0.72 -12.45 5.41 -61.62 -0.33 -12.78 16 9 C 0.15 2.76 5.69 -4.04 -0.02 2.74 16 10 C 0.13 2.47 2.24 -131.82 -0.30 2.17 16 11 N -0.69 -16.16 5.53 -47.24 -0.26 -16.42 16 12 C -0.24 -6.45 9.32 -15.06 -0.14 -6.59 16 13 H 0.07 1.97 7.62 -52.49 -0.40 1.57 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -27.03 13.07 55.49 0.73 -26.30 16 16 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 C -0.19 -3.23 10.11 -26.69 -0.27 -3.50 16 21 C -0.19 -2.93 10.06 -26.70 -0.27 -3.20 16 22 N -0.42 -5.62 3.16 -115.61 -0.37 -5.98 16 23 C 0.05 0.53 9.19 59.85 0.55 1.08 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 28 H 0.15 2.09 8.06 -52.48 -0.42 1.66 16 29 H 0.40 6.05 4.10 -40.82 -0.17 5.88 16 30 H 0.06 1.03 7.94 -51.93 -0.41 0.61 16 31 H 0.08 1.84 7.35 -51.93 -0.38 1.46 16 32 H 0.39 9.57 8.03 -40.82 -0.33 9.24 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 39 H 0.10 0.76 6.97 -51.93 -0.36 0.40 16 40 H 0.10 1.21 6.59 -51.93 -0.34 0.87 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -32.38 336.73 -8.05 -40.44 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.70 Total: 14.03 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.26 Total: -3.69 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.23 Total: -61.49 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.38 -8.05 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.320 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds