Wall clock time and date at job start Mon Mar 30 2020 01:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35455 * 125.56189 * 2 1 4 4 C 1.39833 * 107.86113 * 180.02562 * 3 2 1 5 5 C 1.37867 * 107.08985 * 0.02562 * 4 3 2 6 6 C 1.46680 * 126.23725 * 180.02562 * 5 4 3 7 7 O 1.21696 * 119.99592 * 353.16199 * 6 5 4 8 8 N 1.34772 * 119.99955 * 173.16892 * 6 5 4 9 9 C 1.46505 * 119.99803 * 184.43939 * 8 6 5 10 10 C 1.52998 * 109.47393 * 184.33964 * 9 8 6 11 11 N 1.46498 * 115.54951 * 80.36050 * 10 9 8 12 12 C 1.36943 * 119.99832 * 57.25209 * 11 10 9 13 13 H 1.07996 * 119.99819 * 5.68230 * 12 11 10 14 14 C 1.38813 * 120.00137 * 185.67618 * 12 11 10 15 15 N 1.31619 * 119.99989 * 354.65837 * 14 12 11 16 16 Si 1.86793 * 119.99912 * 174.65497 * 14 12 11 17 17 H 1.48500 * 109.47256 * 275.01418 * 16 14 12 18 18 H 1.48496 * 109.47295 * 35.01680 * 16 14 12 19 19 H 1.48506 * 109.47077 * 155.01716 * 16 14 12 20 20 C 1.52998 * 117.49956 * 226.03767 * 10 9 8 21 21 C 1.52995 * 117.49676 * 294.69809 * 10 9 8 22 22 N 1.35528 * 125.56608 * 180.34800 * 2 1 3 23 23 C 1.46508 * 125.67817 * 0.02562 * 22 2 1 24 24 H 1.08992 * 109.46994 * 89.97647 * 1 2 3 25 25 H 1.09003 * 109.46950 * 209.98019 * 1 2 3 26 26 H 1.09003 * 109.47067 * 329.97969 * 1 2 3 27 27 H 1.08003 * 126.06749 * 0.06814 * 3 2 1 28 28 H 1.08007 * 126.45653 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00746 * 4.44204 * 8 6 5 30 30 H 1.08997 * 109.47221 * 64.33851 * 9 8 6 31 31 H 1.09001 * 109.46887 * 304.34020 * 9 8 6 32 32 H 0.96998 * 120.00387 * 237.24899 * 11 10 9 33 33 H 0.96996 * 120.00189 * 179.97438 * 15 14 12 34 34 H 1.09005 * 117.49731 * 215.00697 * 20 10 9 35 35 H 1.08997 * 117.49783 * 0.02562 * 20 10 9 36 36 H 1.09002 * 117.50240 * 359.97090 * 21 10 9 37 37 H 1.09004 * 117.50400 * 144.97669 * 21 10 9 38 38 H 1.09001 * 109.46748 * 255.61817 * 23 22 2 39 39 H 1.08997 * 109.46955 * 15.61851 * 23 22 2 40 40 H 1.08998 * 109.46923 * 135.61498 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6123 -0.7018 -0.0015 6 6 4.7860 -1.5815 -0.0019 7 8 5.9005 -1.1088 -0.1268 8 7 4.6303 -2.9130 0.1360 9 6 5.8059 -3.7818 0.2334 10 6 5.3575 -5.2441 0.2735 11 7 5.0274 -5.8395 -1.0237 12 6 5.9598 -5.8562 -2.0266 13 1 6.9661 -5.5147 -1.8340 14 6 5.6116 -6.3123 -3.2906 15 7 4.4180 -6.8262 -3.4990 16 14 6.8370 -6.1964 -4.6956 17 1 6.7546 -4.8490 -5.3145 18 1 8.2097 -6.4189 -4.1749 19 1 6.5207 -7.2293 -5.7147 20 6 6.0002 -6.1515 1.3244 21 6 4.5464 -5.7012 1.4875 22 7 2.2953 -1.1024 -0.0067 23 6 1.8243 -2.4897 -0.0157 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 1.9545 2.1269 0.0010 28 1 4.5025 1.3092 -0.0004 29 1 3.7399 -3.2963 0.1707 30 1 6.3576 -3.5459 1.1433 31 1 6.4482 -3.6224 -0.6327 32 1 4.1485 -6.2220 -1.1723 33 1 4.1745 -7.1445 -4.3823 34 1 6.1776 -7.1916 1.0505 35 1 6.7421 -5.7067 1.9875 36 1 4.3325 -4.9604 2.2579 37 1 3.7669 -6.4448 1.3210 38 1 1.9488 -2.9220 0.9772 39 1 0.7704 -2.5137 -0.2929 40 1 2.4031 -3.0652 -0.7379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733239507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:27 Heat of formation + Delta-G solvation = 32.195716 kcal Electronic energy + Delta-G solvation = -21667.649269 eV Core-core repulsion = 18483.719789 eV Total energy + Delta-G solvation = -3183.929480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49593 -40.37470 -38.94648 -35.62584 -35.00029 -33.66780 -32.60752 -31.69784 -28.87648 -27.61938 -26.72342 -25.96799 -23.43155 -22.63437 -21.52709 -20.78486 -20.23319 -19.20147 -18.64503 -17.29890 -16.83458 -16.80878 -16.28510 -16.06720 -15.63542 -15.43941 -15.27364 -14.88792 -14.36163 -14.03824 -13.83491 -13.74695 -13.61816 -13.52259 -13.04187 -12.97118 -12.87719 -12.80820 -12.58415 -12.32279 -12.23702 -11.94151 -11.80120 -11.35211 -11.04580 -10.66611 -10.20145 -9.72598 -9.05170 -8.99947 -8.01713 -5.28633 0.42320 1.41589 1.44596 1.50478 1.71379 1.79447 2.11474 2.34290 2.48786 3.03513 3.35253 3.60455 3.67309 3.77435 3.80451 3.97804 4.11716 4.18858 4.28082 4.29961 4.52333 4.54912 4.69372 4.75574 4.77873 4.84833 4.88655 5.00455 5.06467 5.13892 5.17229 5.28232 5.32224 5.39332 5.51451 5.84745 5.94794 6.22256 6.28659 6.50219 7.11326 7.29147 8.00689 8.25325 9.20557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.004990 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.447237 B = 5610.285382 C = 5967.735066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.056 3.944 3 C -0.222 4.222 4 C -0.122 4.122 5 C -0.091 4.091 6 C 0.578 3.422 7 O -0.584 6.584 8 N -0.709 5.709 9 C 0.156 3.844 10 C 0.098 3.902 11 N -0.696 5.696 12 C -0.233 4.233 13 H 0.067 0.933 14 C -0.063 4.063 15 N -0.960 5.960 16 Si 0.958 3.042 17 H -0.294 1.294 18 H -0.272 1.272 19 H -0.291 1.291 20 C -0.186 4.186 21 C -0.155 4.155 22 N -0.425 5.425 23 C 0.043 3.957 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.167 0.833 28 H 0.140 0.860 29 H 0.406 0.594 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.379 0.621 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 10.558 12.004 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.245 4.245 4 C -0.149 4.149 5 C -0.202 4.202 6 C 0.368 3.632 7 O -0.465 6.465 8 N -0.363 5.363 9 C 0.030 3.970 10 C 0.006 3.994 11 N -0.334 5.334 12 C -0.365 4.365 13 H 0.085 0.915 14 C -0.256 4.256 15 N -0.610 5.610 16 Si 0.788 3.212 17 H -0.222 1.222 18 H -0.198 1.198 19 H -0.217 1.217 20 C -0.227 4.227 21 C -0.193 4.193 22 N -0.101 5.101 23 C -0.097 4.097 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.247 0.753 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.212 0.788 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.430 10.448 11.799 18.899 hybrid contribution 0.503 -0.564 -1.315 1.517 sum -9.927 9.884 10.484 17.497 Atomic orbital electron populations 1.20580 0.84486 1.05243 1.04124 1.21286 0.95584 0.85031 1.04268 1.20960 0.91208 0.99360 1.12972 1.21463 0.98890 0.91604 1.02943 1.20272 0.83310 0.94691 1.21971 1.17483 0.87695 0.82087 0.75962 1.90762 1.26497 1.76306 1.52949 1.46236 1.11097 1.05682 1.73324 1.21025 0.87309 0.88004 1.00662 1.20340 1.05413 0.90177 0.83484 1.41789 1.14422 1.68725 1.08457 1.19370 0.92704 1.34586 0.89801 0.91476 1.25360 0.98439 1.02229 0.99543 1.69762 1.21310 1.47768 1.22200 0.85382 0.79189 0.76678 0.79933 1.22201 1.19759 1.21717 1.23450 0.96176 1.00327 1.02745 1.23200 0.94705 1.03507 0.97865 1.44123 1.04366 1.07496 1.54124 1.22570 1.04018 0.78650 1.04508 0.89655 0.89908 0.87876 0.81530 0.84247 0.75326 0.90674 0.94027 0.78772 0.93923 0.89954 0.87577 0.86464 0.88311 0.88066 0.85218 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.81 71.24 0.70 -0.24 16 2 C 0.06 1.15 6.87 41.35 0.28 1.43 16 3 C -0.22 -5.07 10.71 22.01 0.24 -4.83 16 4 C -0.12 -3.65 10.66 22.57 0.24 -3.41 16 5 C -0.09 -2.97 6.88 40.35 0.28 -2.69 16 6 C 0.58 22.30 7.77 86.45 0.67 22.98 16 7 O -0.58 -26.82 16.88 -4.34 -0.07 -26.89 16 8 N -0.71 -24.79 5.41 -467.08 -2.53 -27.32 16 9 C 0.16 5.91 5.69 86.38 0.49 6.40 16 10 C 0.10 3.64 2.24 3.60 0.01 3.65 16 11 N -0.70 -33.00 5.53 -303.36 -1.68 -34.68 16 12 C -0.23 -12.72 9.32 84.03 0.78 -11.94 16 13 H 0.07 3.69 7.62 -2.91 -0.02 3.66 16 14 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 15 N -0.96 -56.74 13.07 21.65 0.28 -56.45 16 16 Si 0.96 46.80 29.56 68.60 2.03 48.83 16 17 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 C -0.19 -5.91 10.11 30.62 0.31 -5.60 16 21 C -0.16 -4.28 10.06 30.62 0.31 -3.98 16 22 N -0.42 -10.51 3.16 -519.69 -1.64 -12.16 16 23 C 0.04 0.82 9.19 127.77 1.17 1.99 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.65 7.34 -2.39 -0.02 0.64 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 28 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.41 12.19 4.10 -92.71 -0.38 11.81 16 30 H 0.08 2.58 7.94 -2.39 -0.02 2.56 16 31 H 0.04 1.92 7.35 -2.39 -0.02 1.90 16 32 H 0.38 18.92 8.03 -92.71 -0.74 18.17 16 33 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 34 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 35 H 0.11 2.89 8.08 -2.39 -0.02 2.87 16 36 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.10 1.52 7.84 -2.39 -0.02 1.51 16 39 H 0.13 1.57 6.97 -2.39 -0.02 1.56 16 40 H 0.07 1.74 6.59 -2.39 -0.02 1.72 16 Total: -1.00 -72.93 336.73 2.27 -70.65 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.06 Total: 37.34 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.95 Total: 0.68 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -5.56 Total: -130.61 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.07 Total: -26.89 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.93 2.27 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.851 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds