Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38168 * 120.50141 * 2 1 4 4 N 1.31803 * 120.89860 * 180.02562 * 3 2 1 5 5 C 1.31828 * 122.04322 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90212 * 359.74003 * 5 4 3 7 7 C 1.39798 * 120.49889 * 179.97438 * 2 1 3 8 8 C 1.48147 * 120.92281 * 359.97438 * 7 2 1 9 9 O 1.21512 * 120.00265 * 354.21238 * 8 7 2 10 10 N 1.34779 * 119.99730 * 174.20243 * 8 7 2 11 11 C 1.46510 * 119.99732 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47046 * 34.99767 * 11 10 8 13 13 C 1.52997 * 109.46580 * 275.00061 * 11 10 8 14 14 C 1.52994 * 109.47023 * 155.00297 * 11 10 8 15 15 H 1.09007 * 109.47247 * 294.99561 * 14 11 10 16 16 C 1.53004 * 109.47591 * 54.99584 * 14 11 10 17 17 N 1.46505 * 109.47177 * 174.99826 * 14 11 10 18 18 C 1.36938 * 120.00073 * 154.99853 * 17 14 11 19 19 H 1.08004 * 119.99817 * 359.97438 * 18 17 14 20 20 C 1.38808 * 119.99879 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99854 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47034 * 59.99952 * 22 20 18 24 24 H 1.48497 * 109.46763 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47072 * 299.99638 * 22 20 18 26 26 H 1.08994 * 109.47456 * 263.68823 * 1 2 3 27 27 H 1.08999 * 109.47484 * 23.69111 * 1 2 3 28 28 H 1.09008 * 109.47312 * 143.68987 * 1 2 3 29 29 H 1.08004 * 119.54964 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.54669 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.50346 * 180.28487 * 6 5 4 32 32 H 0.97002 * 120.00579 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.46720 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.47174 * 299.99600 * 13 11 10 35 35 H 1.08992 * 109.47479 * 60.00402 * 13 11 10 36 36 H 1.09001 * 109.47321 * 180.02562 * 16 14 11 37 37 H 1.09001 * 109.46863 * 300.00253 * 16 14 11 38 38 H 1.09007 * 109.46843 * 59.99729 * 16 14 11 39 39 H 0.96996 * 119.99530 * 334.99615 * 17 14 11 40 40 H 0.97006 * 120.00108 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1474 0.0054 7 6 2.2165 -1.2046 0.0005 8 6 1.5078 -2.5055 0.0017 9 8 0.2978 -2.5382 0.1083 10 7 2.2052 -3.6529 -0.1157 11 6 1.5043 -4.9394 -0.1151 12 1 0.5428 -4.8295 -0.6165 13 6 1.2780 -5.3961 1.3274 14 6 2.3484 -5.9803 -0.8532 15 1 2.4352 -5.6998 -1.9029 16 6 3.7424 -6.0447 -0.2256 17 7 1.7054 -7.2927 -0.7501 18 6 1.9455 -8.2493 -1.7000 19 1 2.6086 -8.0362 -2.5255 20 6 1.3358 -9.4925 -1.6026 21 7 0.5275 -9.7520 -0.5969 22 14 1.6628 -10.7973 -2.8989 23 1 3.1140 -11.1108 -2.9306 24 1 0.8984 -12.0266 -2.5676 25 1 1.2363 -10.2919 -4.2285 26 1 -0.3634 -0.1130 1.0214 27 1 -0.3634 0.9410 -0.4129 28 1 -0.3634 -0.8282 -0.6086 29 1 1.6691 2.1263 -0.0004 30 1 5.3120 0.1416 -0.0005 31 1 4.1994 -2.0547 0.0099 32 1 3.1712 -3.6269 -0.2006 33 1 0.7569 -6.3536 1.3279 34 1 2.2396 -5.5060 1.8289 35 1 0.6767 -4.6546 1.8532 36 1 4.3439 -6.7859 -0.7517 37 1 4.2208 -5.0682 -0.3024 38 1 3.6556 -6.3252 0.8241 39 1 1.1097 -7.4839 -0.0089 40 1 0.1011 -10.6207 -0.5290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733975435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = 10.426262 kcal Electronic energy + Delta-G solvation = -21323.914285 eV Core-core repulsion = 18139.040811 eV Total energy + Delta-G solvation = -3184.873474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91436 -39.27781 -37.03143 -34.20245 -33.55042 -32.65788 -31.49043 -29.38447 -28.27172 -27.51092 -25.05283 -24.39433 -23.28308 -22.28319 -20.79204 -19.33735 -18.21239 -17.42201 -16.77284 -15.74920 -15.50086 -15.40450 -15.03684 -14.69633 -14.30833 -14.06463 -13.77069 -13.62753 -13.47912 -12.85856 -12.82820 -12.53392 -12.44306 -12.03800 -11.79529 -11.68267 -11.35836 -10.97392 -10.85611 -10.53988 -10.33098 -10.26659 -10.06789 -10.02469 -9.73862 -9.44438 -9.21283 -8.98373 -8.87737 -7.05635 -5.82452 -3.12440 0.52078 0.80910 2.84109 3.09929 3.40900 3.45650 3.46461 3.61715 4.13874 4.41206 4.50660 4.55135 4.59147 4.74298 5.10829 5.26176 5.38353 5.40291 5.46211 5.55735 5.57742 5.59867 5.63776 5.75443 5.86689 5.99348 6.06538 6.19017 6.23279 6.32933 6.35166 6.43110 6.55714 6.65346 6.82903 7.00752 7.52688 7.63225 7.64082 8.19216 8.35890 9.47222 10.01727 10.36642 11.39979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033389 B = 0.003521 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.403446 B = 7949.262557 C = 8295.318855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.469 5.469 5 C 0.085 3.915 6 C -0.137 4.137 7 C -0.090 4.090 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.710 5.710 11 C 0.136 3.864 12 H 0.091 0.909 13 C -0.159 4.159 14 C 0.168 3.832 15 H 0.052 0.948 16 C -0.169 4.169 17 N -0.719 5.719 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.397 0.603 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 19.440 2.769 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.067 4.067 4 N -0.177 5.177 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.101 4.101 8 C 0.339 3.661 9 O -0.402 6.402 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.109 0.891 13 C -0.218 4.218 14 C 0.057 3.943 15 H 0.070 0.930 16 C -0.229 4.229 17 N -0.362 5.362 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.157 0.843 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.223 0.777 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.310 20.035 2.698 20.902 hybrid contribution 0.220 -1.699 -0.442 1.769 sum 5.530 18.336 2.256 19.284 Atomic orbital electron populations 1.20997 0.88961 1.03496 1.03974 1.21149 0.98530 0.92433 0.95905 1.22739 0.89758 0.97393 0.96784 1.67541 1.08336 1.31827 1.10042 1.22699 1.00542 0.87235 0.96686 1.22378 0.93967 1.00251 0.99162 1.20371 0.93788 0.94193 1.01773 1.18151 0.87106 0.83558 0.77305 1.90738 1.13370 1.87000 1.49084 1.46203 1.10905 1.05952 1.73205 1.21404 0.97001 0.81135 0.97316 0.89143 1.22144 1.01823 1.02072 0.95724 1.20361 0.90724 0.86478 0.96751 0.93002 1.22552 0.99451 0.99016 1.01905 1.42436 1.54938 1.08511 1.30340 1.19177 1.22921 0.92361 1.03024 0.91154 1.24743 0.99632 0.97912 0.98371 1.69643 1.33833 1.22982 1.31461 0.86256 0.77510 0.81255 0.81067 1.21246 1.21659 1.21210 0.90322 0.91943 0.88391 0.82202 0.82187 0.84296 0.76591 0.90323 0.92490 0.93036 0.92238 0.95064 0.92709 0.77743 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.84 36.00 0.32 -0.91 16 2 C -0.08 -0.85 5.93 -104.07 -0.62 -1.47 16 3 C 0.09 0.90 10.83 -17.59 -0.19 0.71 16 4 N -0.47 -5.01 10.34 -13.30 -0.14 -5.15 16 5 C 0.08 0.77 11.17 -17.60 -0.20 0.57 16 6 C -0.14 -1.29 9.60 -39.02 -0.37 -1.66 16 7 C -0.09 -1.06 5.91 -104.65 -0.62 -1.68 16 8 C 0.55 7.83 7.70 -12.19 -0.09 7.74 16 9 O -0.52 -8.90 13.19 5.35 0.07 -8.83 16 10 N -0.71 -9.53 4.95 -54.66 -0.27 -9.80 16 11 C 0.14 2.25 2.62 -67.93 -0.18 2.07 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 13 C -0.16 -2.61 9.00 37.16 0.33 -2.27 16 14 C 0.17 3.12 2.93 -67.93 -0.20 2.92 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 C -0.17 -2.71 9.01 37.16 0.33 -2.38 16 17 N -0.72 -17.20 5.03 -53.42 -0.27 -17.46 16 18 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.29 5.50 -17.44 -0.10 -0.38 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.10 1.26 5.95 -51.92 -0.31 0.95 16 29 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 0.97 6.58 -52.49 -0.35 0.63 16 32 H 0.40 4.35 4.75 -40.82 -0.19 4.15 16 33 H 0.08 1.44 6.29 -51.92 -0.33 1.12 16 34 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.38 6.29 -51.93 -0.33 0.05 16 38 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 39 H 0.39 9.78 5.77 -40.82 -0.24 9.55 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -31.44 325.58 -7.04 -38.47 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.31 Total: 11.16 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.73 Total: -3.44 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.05 Total: -59.20 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.44 -7.04 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.899 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds