Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38168 * 120.50141 * 2 1 4 4 N 1.31803 * 120.89860 * 180.02562 * 3 2 1 5 5 C 1.31828 * 122.04322 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90212 * 359.74003 * 5 4 3 7 7 C 1.39798 * 120.49889 * 179.97438 * 2 1 3 8 8 C 1.48147 * 120.92281 * 359.97438 * 7 2 1 9 9 O 1.21512 * 120.00265 * 354.21238 * 8 7 2 10 10 N 1.34779 * 119.99730 * 174.20243 * 8 7 2 11 11 C 1.46510 * 119.99732 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47046 * 34.99767 * 11 10 8 13 13 C 1.52997 * 109.46580 * 275.00061 * 11 10 8 14 14 C 1.52994 * 109.47023 * 155.00297 * 11 10 8 15 15 H 1.09007 * 109.47247 * 294.99561 * 14 11 10 16 16 C 1.53004 * 109.47591 * 54.99584 * 14 11 10 17 17 N 1.46505 * 109.47177 * 174.99826 * 14 11 10 18 18 C 1.36938 * 120.00073 * 154.99853 * 17 14 11 19 19 H 1.08004 * 119.99817 * 359.97438 * 18 17 14 20 20 C 1.38808 * 119.99879 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99854 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47034 * 59.99952 * 22 20 18 24 24 H 1.48497 * 109.46763 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47072 * 299.99638 * 22 20 18 26 26 H 1.08994 * 109.47456 * 263.68823 * 1 2 3 27 27 H 1.08999 * 109.47484 * 23.69111 * 1 2 3 28 28 H 1.09008 * 109.47312 * 143.68987 * 1 2 3 29 29 H 1.08004 * 119.54964 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.54669 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.50346 * 180.28487 * 6 5 4 32 32 H 0.97002 * 120.00579 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.46720 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.47174 * 299.99600 * 13 11 10 35 35 H 1.08992 * 109.47479 * 60.00402 * 13 11 10 36 36 H 1.09001 * 109.47321 * 180.02562 * 16 14 11 37 37 H 1.09001 * 109.46863 * 300.00253 * 16 14 11 38 38 H 1.09007 * 109.46843 * 59.99729 * 16 14 11 39 39 H 0.96996 * 119.99530 * 334.99615 * 17 14 11 40 40 H 0.97006 * 120.00108 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1474 0.0054 7 6 2.2165 -1.2046 0.0005 8 6 1.5078 -2.5055 0.0017 9 8 0.2978 -2.5382 0.1083 10 7 2.2052 -3.6529 -0.1157 11 6 1.5043 -4.9394 -0.1151 12 1 0.5428 -4.8295 -0.6165 13 6 1.2780 -5.3961 1.3274 14 6 2.3484 -5.9803 -0.8532 15 1 2.4352 -5.6998 -1.9029 16 6 3.7424 -6.0447 -0.2256 17 7 1.7054 -7.2927 -0.7501 18 6 1.9455 -8.2493 -1.7000 19 1 2.6086 -8.0362 -2.5255 20 6 1.3358 -9.4925 -1.6026 21 7 0.5275 -9.7520 -0.5969 22 14 1.6628 -10.7973 -2.8989 23 1 3.1140 -11.1108 -2.9306 24 1 0.8984 -12.0266 -2.5676 25 1 1.2363 -10.2919 -4.2285 26 1 -0.3634 -0.1130 1.0214 27 1 -0.3634 0.9410 -0.4129 28 1 -0.3634 -0.8282 -0.6086 29 1 1.6691 2.1263 -0.0004 30 1 5.3120 0.1416 -0.0005 31 1 4.1994 -2.0547 0.0099 32 1 3.1712 -3.6269 -0.2006 33 1 0.7569 -6.3536 1.3279 34 1 2.2396 -5.5060 1.8289 35 1 0.6767 -4.6546 1.8532 36 1 4.3439 -6.7859 -0.7517 37 1 4.2208 -5.0682 -0.3024 38 1 3.6556 -6.3252 0.8241 39 1 1.1097 -7.4839 -0.0089 40 1 0.1011 -10.6207 -0.5290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733975435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = -10.864786 kcal Electronic energy + Delta-G solvation = -21324.837534 eV Core-core repulsion = 18139.040811 eV Total energy + Delta-G solvation = -3185.796723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83477 -40.33422 -38.45534 -35.75409 -34.40201 -33.98262 -32.81884 -30.87139 -29.82060 -28.33703 -26.21187 -25.96146 -24.70240 -23.17215 -21.91383 -20.71499 -19.56999 -19.03204 -17.70365 -16.84300 -16.69106 -16.43307 -16.23395 -16.12803 -15.73837 -15.39681 -14.98475 -14.80711 -14.51204 -14.30184 -13.94141 -13.64389 -13.49492 -13.35424 -13.09260 -13.00596 -12.77295 -12.65337 -12.50847 -12.18502 -12.01016 -11.67460 -11.61344 -11.25958 -10.94736 -10.90326 -10.37253 -10.15788 -9.90606 -9.03797 -7.93811 -5.22772 -0.33386 0.08673 1.48508 1.51044 1.56964 1.81932 1.96304 2.57984 2.81676 3.39988 3.46418 3.51639 3.75598 3.83119 3.88705 3.94940 3.99476 4.06129 4.30644 4.42701 4.58665 4.62205 4.67833 4.75774 4.78150 4.84961 4.85556 4.94329 4.99306 5.10548 5.19148 5.22943 5.37747 5.48713 5.54117 5.62493 5.64250 6.28155 6.44377 6.90461 7.10564 7.35019 8.09035 8.32024 9.29495 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033389 B = 0.003521 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.403446 B = 7949.262557 C = 8295.318855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C 0.091 3.909 4 N -0.484 5.484 5 C 0.086 3.914 6 C -0.130 4.130 7 C -0.109 4.109 8 C 0.552 3.448 9 O -0.559 6.559 10 N -0.698 5.698 11 C 0.151 3.849 12 H 0.060 0.940 13 C -0.150 4.150 14 C 0.165 3.835 15 H 0.047 0.953 16 C -0.159 4.159 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.280 1.280 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.185 0.815 30 H 0.193 0.807 31 H 0.166 0.834 32 H 0.412 0.588 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.376 0.624 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 21.186 2.415 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.066 4.066 4 N -0.193 5.193 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.120 4.120 8 C 0.339 3.661 9 O -0.438 6.438 10 N -0.352 5.352 11 C 0.045 3.955 12 H 0.079 0.921 13 C -0.208 4.208 14 C 0.056 3.944 15 H 0.065 0.935 16 C -0.219 4.219 17 N -0.376 5.376 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.801 3.199 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.206 1.206 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.202 0.798 30 H 0.210 0.790 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.211 0.789 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.774 21.835 2.327 23.295 hybrid contribution -0.488 -2.097 -0.337 2.180 sum 7.286 19.738 1.990 21.134 Atomic orbital electron populations 1.20906 0.89111 1.03710 1.03224 1.21280 0.98665 0.92845 0.96508 1.23073 0.89750 0.97805 0.95934 1.67619 1.08640 1.32707 1.10367 1.23258 1.02007 0.86571 0.95202 1.22642 0.92852 1.01660 0.97863 1.20281 0.94989 0.92849 1.03894 1.18568 0.86807 0.84394 0.76283 1.90736 1.15053 1.87547 1.50506 1.45921 1.11441 1.04621 1.73193 1.20936 0.95639 0.82129 0.96785 0.92137 1.22033 1.02393 1.00686 0.95719 1.20538 0.92127 0.84635 0.97121 0.93464 1.22377 0.97168 1.01271 1.01083 1.42637 1.55351 1.10094 1.29542 1.19582 1.21665 0.92829 1.03167 0.90423 1.25527 1.00334 1.00217 1.00559 1.69804 1.35575 1.23080 1.33526 0.85242 0.77542 0.78383 0.78766 1.20207 1.22469 1.20615 0.90914 0.89362 0.91148 0.79841 0.79012 0.81700 0.74831 0.92795 0.90786 0.92956 0.93707 0.90450 0.92857 0.78929 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.84 71.23 0.63 -1.69 16 2 C -0.09 -1.87 5.93 -19.50 -0.12 -1.99 16 3 C 0.09 1.60 10.83 84.68 0.92 2.52 16 4 N -0.48 -8.94 10.34 -196.01 -2.03 -10.97 16 5 C 0.09 1.25 11.17 84.67 0.95 2.20 16 6 C -0.13 -2.01 9.60 22.63 0.22 -1.80 16 7 C -0.11 -2.39 5.91 -19.88 -0.12 -2.51 16 8 C 0.55 15.26 7.70 86.88 0.67 15.93 16 9 O -0.56 -19.40 13.19 -3.75 -0.05 -19.45 16 10 N -0.70 -17.64 4.95 -445.12 -2.20 -19.84 16 11 C 0.15 4.97 2.62 44.99 0.12 5.09 16 12 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 13 C -0.15 -4.91 9.00 71.98 0.65 -4.26 16 14 C 0.16 6.01 2.93 44.99 0.13 6.14 16 15 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 16 C -0.16 -4.73 9.01 71.98 0.65 -4.08 16 17 N -0.73 -35.50 5.03 -322.92 -1.63 -37.12 16 18 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 21 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 22 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.28 8.06 -2.39 -0.02 1.26 16 28 H 0.07 1.87 5.95 -2.38 -0.01 1.85 16 29 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.17 1.56 6.58 -2.91 -0.02 1.54 16 32 H 0.41 7.68 4.75 -92.71 -0.44 7.24 16 33 H 0.05 2.04 6.29 -2.38 -0.01 2.03 16 34 H 0.07 2.14 6.56 -2.39 -0.02 2.13 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.56 6.29 -2.39 -0.02 1.55 16 38 H 0.05 1.61 6.57 -2.38 -0.02 1.60 16 39 H 0.38 19.63 5.77 -92.71 -0.54 19.09 16 40 H 0.25 14.82 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -69.56 325.58 2.50 -67.06 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.09 Total: 31.51 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.99 Total: -0.28 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.57 Total: -126.32 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.56 2.50 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.199 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds