Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49985 * 2 1 4 4 N 1.31797 * 120.89521 * 179.72950 * 3 2 1 5 5 C 1.31831 * 122.04830 * 0.58353 * 4 3 2 6 6 C 1.38126 * 120.89503 * 359.67770 * 5 4 3 7 7 C 1.39800 * 120.50223 * 180.27345 * 2 1 3 8 8 C 1.48150 * 120.91807 * 359.95859 * 7 2 1 9 9 O 1.21515 * 120.00238 * 354.02981 * 8 7 2 10 10 N 1.34782 * 119.99868 * 174.02808 * 8 7 2 11 11 C 1.46497 * 120.00115 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47368 * 325.00269 * 11 10 8 13 13 C 1.53001 * 109.46939 * 85.00141 * 11 10 8 14 14 C 1.53000 * 109.47284 * 205.00202 * 11 10 8 15 15 H 1.09000 * 109.46973 * 300.00309 * 14 11 10 16 16 C 1.53001 * 109.47183 * 60.00088 * 14 11 10 17 17 N 1.46497 * 109.47284 * 179.97438 * 14 11 10 18 18 C 1.36935 * 120.00269 * 154.99850 * 17 14 11 19 19 H 1.08006 * 119.99823 * 359.97438 * 18 17 14 20 20 C 1.38806 * 120.00326 * 180.02562 * 18 17 14 21 21 N 1.31622 * 120.00139 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47287 * 90.00125 * 22 20 18 24 24 H 1.48504 * 109.47418 * 209.99831 * 22 20 18 25 25 H 1.48500 * 109.47060 * 330.00099 * 22 20 18 26 26 H 1.09004 * 109.47256 * 263.16163 * 1 2 3 27 27 H 1.08994 * 109.46790 * 143.16475 * 1 2 3 28 28 H 1.08995 * 109.47078 * 23.16363 * 1 2 3 29 29 H 1.07999 * 119.55256 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.55155 * 179.70771 * 5 4 3 31 31 H 1.08003 * 120.49586 * 180.02562 * 6 5 4 32 32 H 0.96994 * 119.99875 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.47327 * 60.00300 * 13 11 10 34 34 H 1.08999 * 109.46604 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.46798 * 299.99714 * 13 11 10 36 36 H 1.08995 * 109.46853 * 180.02562 * 16 14 11 37 37 H 1.09009 * 109.46723 * 299.99961 * 16 14 11 38 38 H 1.08997 * 109.47327 * 59.99823 * 16 14 11 39 39 H 0.97002 * 119.99688 * 335.00302 * 17 14 11 40 40 H 0.97003 * 119.99637 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0053 5 6 4.2335 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0059 7 6 2.2166 -1.2045 -0.0057 8 6 1.5079 -2.5055 -0.0110 9 8 0.2982 -2.5389 0.0990 10 7 2.2049 -3.6521 -0.1380 11 6 1.5042 -4.9386 -0.1426 12 1 0.6497 -4.8894 0.5322 13 6 1.0178 -5.2492 -1.5596 14 6 2.4583 -6.0407 0.3221 15 1 3.3128 -6.0899 -0.3527 16 6 2.9447 -5.7301 1.7391 17 7 1.7574 -7.3271 0.3181 18 6 2.4653 -8.4922 0.1892 19 1 3.5404 -8.4626 0.0902 20 6 1.8012 -9.7110 0.1848 21 7 2.4817 -10.8309 0.0615 22 14 -0.0583 -9.7621 0.3554 23 1 -0.6809 -9.6999 -0.9915 24 1 -0.4593 -11.0238 1.0282 25 1 -0.5131 -8.6032 1.1649 26 1 -0.3634 -0.1224 1.0204 27 1 -0.3633 -0.8225 -0.6161 28 1 -0.3633 0.9448 -0.4042 29 1 1.6692 2.1263 0.0004 30 1 5.3121 0.1416 -0.0006 31 1 4.1995 -2.0546 -0.0103 32 1 3.1705 -3.6254 -0.2255 33 1 1.8723 -5.2985 -2.2345 34 1 0.4961 -6.2062 -1.5630 35 1 0.3380 -4.4640 -1.8907 36 1 3.6247 -6.5150 2.0700 37 1 3.4661 -4.7728 1.7426 38 1 2.0902 -5.6808 2.4140 39 1 0.7918 -7.3536 0.4066 40 1 2.0175 -11.6826 0.0580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733975439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = 9.966088 kcal Electronic energy + Delta-G solvation = -21383.024757 eV Core-core repulsion = 18198.131329 eV Total energy + Delta-G solvation = -3184.893428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97010 -39.33459 -37.03265 -34.35010 -33.60607 -32.67232 -31.60582 -29.75391 -28.96472 -27.55726 -25.01335 -23.95835 -23.00388 -22.15210 -20.67620 -20.25688 -18.37865 -17.68030 -16.86701 -15.83668 -15.60565 -15.41744 -15.23979 -14.53589 -14.25165 -14.03839 -13.70243 -13.66282 -13.51451 -13.00531 -12.88407 -12.64668 -12.53573 -12.20861 -11.90529 -11.80451 -11.43675 -11.18129 -10.96358 -10.84671 -10.37206 -10.30996 -10.10380 -10.02957 -9.65860 -9.50711 -9.26805 -9.11981 -8.91890 -7.36467 -5.83289 -3.20200 0.46960 0.76821 2.76928 2.99472 3.34540 3.37944 3.42922 3.56597 4.10176 4.35450 4.45475 4.53848 4.54058 4.68973 5.02935 5.09390 5.30514 5.34079 5.34908 5.41099 5.52771 5.56342 5.58027 5.62925 5.80870 5.92917 5.96711 6.13164 6.18791 6.20899 6.29408 6.34453 6.43086 6.59170 6.70985 6.86296 7.43109 7.59463 7.90218 8.09822 8.34944 9.12114 9.84678 10.03203 11.34639 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033931 B = 0.003801 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.001442 B = 7364.894186 C = 7883.828288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.468 5.468 5 C 0.085 3.915 6 C -0.136 4.136 7 C -0.091 4.091 8 C 0.555 3.445 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.132 3.868 12 H 0.087 0.913 13 C -0.154 4.154 14 C 0.174 3.826 15 H 0.060 0.940 16 C -0.165 4.165 17 N -0.742 5.742 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.399 0.601 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.362 0.638 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 22.649 -0.852 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.177 5.177 5 C -0.071 4.071 6 C -0.157 4.157 7 C -0.102 4.102 8 C 0.342 3.658 9 O -0.403 6.403 10 N -0.358 5.358 11 C 0.028 3.972 12 H 0.105 0.895 13 C -0.213 4.213 14 C 0.063 3.937 15 H 0.078 0.922 16 C -0.226 4.226 17 N -0.385 5.385 18 C -0.374 4.374 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.202 1.202 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.178 0.822 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.234 0.766 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.196 0.804 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.390 23.175 -0.802 23.192 hybrid contribution -1.110 -1.060 0.173 1.545 sum -0.721 22.114 -0.629 22.135 Atomic orbital electron populations 1.20986 0.89001 1.03369 1.03989 1.21145 0.98492 0.92461 0.95968 1.22739 0.89768 0.97382 0.96766 1.67541 1.08325 1.31864 1.09959 1.22718 1.00588 0.87220 0.96575 1.22389 0.93931 1.00322 0.99020 1.20330 0.93799 0.94068 1.01989 1.18122 0.87064 0.83523 0.77136 1.90736 1.13406 1.86918 1.49270 1.45966 1.10847 1.05860 1.73172 1.21422 0.96245 0.81448 0.98111 0.89540 1.22072 1.01335 1.02131 0.95740 1.20358 0.93678 0.84838 0.94788 0.92180 1.22430 1.01099 0.99660 0.99363 1.42643 1.05250 1.01272 1.89362 1.19006 0.92990 0.82667 1.42786 0.89116 1.24646 0.97260 0.95197 1.01710 1.69696 1.34464 0.96972 1.56788 0.86606 0.87223 0.77053 0.78002 1.20934 1.21669 1.20218 0.90316 0.88529 0.91941 0.82207 0.82128 0.84159 0.76616 0.92478 0.90595 0.93126 0.92020 0.94346 0.93453 0.80434 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.83 36.01 0.32 -0.83 16 2 C -0.08 -0.82 5.93 -104.06 -0.62 -1.43 16 3 C 0.09 0.86 10.83 -17.59 -0.19 0.67 16 4 N -0.47 -4.83 10.34 -13.31 -0.14 -4.97 16 5 C 0.09 0.74 11.17 -17.59 -0.20 0.54 16 6 C -0.14 -1.20 9.60 -39.03 -0.37 -1.57 16 7 C -0.09 -1.01 5.91 -104.65 -0.62 -1.63 16 8 C 0.56 7.34 7.70 -12.19 -0.09 7.25 16 9 O -0.53 -8.38 13.20 5.35 0.07 -8.31 16 10 N -0.71 -8.74 4.34 -54.65 -0.24 -8.98 16 11 C 0.13 2.03 2.21 -67.93 -0.15 1.88 16 12 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 13 C -0.15 -2.39 9.33 37.16 0.35 -2.04 16 14 C 0.17 3.04 2.52 -67.93 -0.17 2.87 16 15 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 16 C -0.17 -2.70 9.33 37.16 0.35 -2.35 16 17 N -0.74 -16.49 4.23 -53.43 -0.23 -16.72 16 18 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 19 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -28.56 13.97 55.49 0.78 -27.78 16 22 Si 0.88 21.62 27.73 -169.99 -4.71 16.91 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.16 5.97 -51.93 -0.31 0.85 16 28 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.14 0.89 6.58 -52.48 -0.35 0.55 16 32 H 0.40 3.92 6.56 -40.82 -0.27 3.65 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.30 7.45 -51.93 -0.39 0.91 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.50 7.44 -51.92 -0.39 0.12 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.36 8.09 5.45 -40.82 -0.22 7.87 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -32.18 330.18 -6.85 -39.02 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.70 Total: 9.09 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.65 Total: -3.24 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.17 Total: -58.44 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.31 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.18 -6.85 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.990 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds