Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49985 * 2 1 4 4 N 1.31797 * 120.89521 * 179.72950 * 3 2 1 5 5 C 1.31831 * 122.04830 * 0.58353 * 4 3 2 6 6 C 1.38126 * 120.89503 * 359.67770 * 5 4 3 7 7 C 1.39800 * 120.50223 * 180.27345 * 2 1 3 8 8 C 1.48150 * 120.91807 * 359.95859 * 7 2 1 9 9 O 1.21515 * 120.00238 * 354.02981 * 8 7 2 10 10 N 1.34782 * 119.99868 * 174.02808 * 8 7 2 11 11 C 1.46497 * 120.00115 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47368 * 325.00269 * 11 10 8 13 13 C 1.53001 * 109.46939 * 85.00141 * 11 10 8 14 14 C 1.53000 * 109.47284 * 205.00202 * 11 10 8 15 15 H 1.09000 * 109.46973 * 300.00309 * 14 11 10 16 16 C 1.53001 * 109.47183 * 60.00088 * 14 11 10 17 17 N 1.46497 * 109.47284 * 179.97438 * 14 11 10 18 18 C 1.36935 * 120.00269 * 154.99850 * 17 14 11 19 19 H 1.08006 * 119.99823 * 359.97438 * 18 17 14 20 20 C 1.38806 * 120.00326 * 180.02562 * 18 17 14 21 21 N 1.31622 * 120.00139 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47287 * 90.00125 * 22 20 18 24 24 H 1.48504 * 109.47418 * 209.99831 * 22 20 18 25 25 H 1.48500 * 109.47060 * 330.00099 * 22 20 18 26 26 H 1.09004 * 109.47256 * 263.16163 * 1 2 3 27 27 H 1.08994 * 109.46790 * 143.16475 * 1 2 3 28 28 H 1.08995 * 109.47078 * 23.16363 * 1 2 3 29 29 H 1.07999 * 119.55256 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.55155 * 179.70771 * 5 4 3 31 31 H 1.08003 * 120.49586 * 180.02562 * 6 5 4 32 32 H 0.96994 * 119.99875 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.47327 * 60.00300 * 13 11 10 34 34 H 1.08999 * 109.46604 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.46798 * 299.99714 * 13 11 10 36 36 H 1.08995 * 109.46853 * 180.02562 * 16 14 11 37 37 H 1.09009 * 109.46723 * 299.99961 * 16 14 11 38 38 H 1.08997 * 109.47327 * 59.99823 * 16 14 11 39 39 H 0.97002 * 119.99688 * 335.00302 * 17 14 11 40 40 H 0.97003 * 119.99637 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0053 5 6 4.2335 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0059 7 6 2.2166 -1.2045 -0.0057 8 6 1.5079 -2.5055 -0.0110 9 8 0.2982 -2.5389 0.0990 10 7 2.2049 -3.6521 -0.1380 11 6 1.5042 -4.9386 -0.1426 12 1 0.6497 -4.8894 0.5322 13 6 1.0178 -5.2492 -1.5596 14 6 2.4583 -6.0407 0.3221 15 1 3.3128 -6.0899 -0.3527 16 6 2.9447 -5.7301 1.7391 17 7 1.7574 -7.3271 0.3181 18 6 2.4653 -8.4922 0.1892 19 1 3.5404 -8.4626 0.0902 20 6 1.8012 -9.7110 0.1848 21 7 2.4817 -10.8309 0.0615 22 14 -0.0583 -9.7621 0.3554 23 1 -0.6809 -9.6999 -0.9915 24 1 -0.4593 -11.0238 1.0282 25 1 -0.5131 -8.6032 1.1649 26 1 -0.3634 -0.1224 1.0204 27 1 -0.3633 -0.8225 -0.6161 28 1 -0.3633 0.9448 -0.4042 29 1 1.6692 2.1263 0.0004 30 1 5.3121 0.1416 -0.0006 31 1 4.1995 -2.0546 -0.0103 32 1 3.1705 -3.6254 -0.2255 33 1 1.8723 -5.2985 -2.2345 34 1 0.4961 -6.2062 -1.5630 35 1 0.3380 -4.4640 -1.8907 36 1 3.6247 -6.5150 2.0700 37 1 3.4661 -4.7728 1.7426 38 1 2.0902 -5.6808 2.4140 39 1 0.7918 -7.3536 0.4066 40 1 2.0175 -11.6826 0.0580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733975439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -11.867430 kcal Electronic energy + Delta-G solvation = -21383.971530 eV Core-core repulsion = 18198.131329 eV Total energy + Delta-G solvation = -3185.840201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82296 -40.31155 -38.41283 -35.82290 -34.39901 -34.00372 -33.00789 -31.09512 -30.50383 -28.31986 -25.88836 -25.72252 -24.19698 -23.10278 -21.74795 -21.66888 -19.93317 -18.98029 -17.80899 -17.00581 -16.58604 -16.35126 -16.19506 -16.09757 -15.72251 -15.18340 -14.86436 -14.75841 -14.57607 -14.31070 -14.24299 -13.84552 -13.62953 -13.48244 -13.10710 -13.08201 -12.79348 -12.63170 -12.50469 -12.33965 -12.10341 -11.80887 -11.50484 -11.26446 -11.02922 -10.89685 -10.35533 -10.18783 -9.90908 -9.33215 -8.01251 -5.34568 -0.32679 0.08993 1.39643 1.40270 1.47362 1.82728 1.94391 2.48738 2.81964 3.31006 3.43967 3.50984 3.66160 3.73230 3.81901 3.83871 3.98811 4.13258 4.27948 4.43683 4.55650 4.62968 4.70578 4.75878 4.79018 4.82597 4.85475 4.90365 4.98306 5.09676 5.12940 5.27774 5.36543 5.47320 5.49315 5.64276 5.78917 6.22204 6.44443 6.91044 7.06890 7.10875 7.82996 8.00405 9.19925 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033931 B = 0.003801 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.001442 B = 7364.894186 C = 7883.828288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.084 3.916 6 C -0.130 4.130 7 C -0.108 4.108 8 C 0.556 3.444 9 O -0.557 6.557 10 N -0.697 5.697 11 C 0.147 3.853 12 H 0.072 0.928 13 C -0.150 4.150 14 C 0.171 3.829 15 H 0.064 0.936 16 C -0.157 4.157 17 N -0.746 5.746 18 C -0.221 4.221 19 H 0.065 0.935 20 C -0.059 4.059 21 N -0.982 5.982 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.256 1.256 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.184 0.816 30 H 0.191 0.809 31 H 0.166 0.834 32 H 0.413 0.587 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.364 0.636 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 25.176 -0.790 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.067 4.067 4 N -0.195 5.195 5 C -0.072 4.072 6 C -0.150 4.150 7 C -0.119 4.119 8 C 0.344 3.656 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.042 3.958 12 H 0.090 0.910 13 C -0.208 4.208 14 C 0.062 3.938 15 H 0.082 0.918 16 C -0.217 4.217 17 N -0.389 5.389 18 C -0.352 4.352 19 H 0.083 0.917 20 C -0.251 4.251 21 N -0.633 5.633 22 Si 0.772 3.228 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.181 1.181 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.201 0.799 30 H 0.208 0.792 31 H 0.184 0.816 32 H 0.251 0.749 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.197 0.803 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.662 25.779 -0.735 25.798 hybrid contribution -1.069 -1.720 0.141 2.030 sum -0.407 24.058 -0.595 24.069 Atomic orbital electron populations 1.20902 0.88992 1.03730 1.03217 1.21286 0.98710 0.92818 0.96462 1.23072 0.89728 0.97883 0.96018 1.67608 1.08716 1.32762 1.10377 1.23242 1.01959 0.86684 0.95315 1.22647 0.92985 1.01588 0.97749 1.20269 0.94870 0.92948 1.03846 1.18455 0.86764 0.84212 0.76199 1.90733 1.14899 1.87406 1.50593 1.45734 1.11486 1.04625 1.73097 1.21003 0.95260 0.82001 0.97554 0.90984 1.22012 1.01555 1.01267 0.96003 1.20541 0.93909 0.83525 0.95804 0.91776 1.22300 1.00669 1.00923 0.97819 1.42653 1.05310 1.01712 1.89264 1.18977 0.92109 0.84186 1.39902 0.91717 1.25366 1.01791 0.94970 1.02964 1.69860 1.36305 0.97556 1.59585 0.85573 0.81833 0.77138 0.78229 1.20433 1.22578 1.18113 0.90996 0.90883 0.89476 0.79949 0.79241 0.81645 0.74888 0.91679 0.92370 0.92758 0.94041 0.90611 0.94087 0.80323 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 8.83 71.24 0.63 -1.46 16 2 C -0.09 -1.73 5.93 -19.50 -0.12 -1.85 16 3 C 0.09 1.49 10.83 84.68 0.92 2.41 16 4 N -0.49 -8.69 10.34 -196.01 -2.03 -10.72 16 5 C 0.08 1.18 11.17 84.67 0.95 2.13 16 6 C -0.13 -1.87 9.60 22.63 0.22 -1.65 16 7 C -0.11 -2.18 5.91 -19.88 -0.12 -2.30 16 8 C 0.56 13.80 7.70 86.88 0.67 14.47 16 9 O -0.56 -17.40 13.20 -3.76 -0.05 -17.45 16 10 N -0.70 -15.62 4.34 -445.11 -1.93 -17.56 16 11 C 0.15 4.27 2.21 44.99 0.10 4.37 16 12 H 0.07 2.36 7.58 -2.39 -0.02 2.34 16 13 C -0.15 -4.44 9.33 71.98 0.67 -3.77 16 14 C 0.17 5.71 2.52 44.99 0.11 5.83 16 15 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 16 C -0.16 -4.83 9.33 71.98 0.67 -4.16 16 17 N -0.75 -32.53 4.23 -322.95 -1.37 -33.90 16 18 C -0.22 -11.90 10.41 84.03 0.87 -11.03 16 19 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 20 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 21 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 22 Si 0.94 44.89 27.73 68.60 1.90 46.79 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 26 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.07 1.74 5.97 -2.39 -0.01 1.72 16 28 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 29 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.17 1.41 6.58 -2.91 -0.02 1.40 16 32 H 0.41 6.77 6.56 -92.71 -0.61 6.16 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.93 7.45 -2.39 -0.02 1.91 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.74 7.44 -2.38 -0.02 1.73 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.36 15.75 5.45 -92.71 -0.50 15.25 16 40 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -70.47 330.18 2.76 -67.71 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.11 Total: 26.38 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.04 Total: 0.07 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -5.02 Total: -123.50 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -70.47 2.76 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.841 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds