Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38176 * 120.49372 * 2 1 4 4 N 1.31802 * 120.88929 * 180.27573 * 3 2 1 5 5 C 1.31823 * 122.05004 * 359.97438 * 4 3 2 6 6 C 1.38129 * 120.89991 * 359.97438 * 5 4 3 7 7 C 1.39795 * 120.50261 * 180.27864 * 2 1 3 8 8 C 1.48149 * 120.92011 * 359.74788 * 7 2 1 9 9 O 1.21511 * 120.00088 * 353.98624 * 8 7 2 10 10 N 1.34774 * 119.99978 * 173.99172 * 8 7 2 11 11 C 1.46493 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46854 * 324.99117 * 11 10 8 13 13 C 1.53001 * 109.47708 * 84.99571 * 11 10 8 14 14 C 1.53001 * 109.47293 * 204.99974 * 11 10 8 15 15 H 1.08998 * 109.47564 * 64.99295 * 14 11 10 16 16 C 1.53004 * 109.46865 * 304.99415 * 14 11 10 17 17 N 1.46503 * 109.47490 * 185.00020 * 14 11 10 18 18 C 1.36934 * 120.00184 * 205.00021 * 17 14 11 19 19 H 1.08000 * 119.99813 * 359.97438 * 18 17 14 20 20 C 1.38808 * 120.00062 * 179.97438 * 18 17 14 21 21 N 1.31615 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46673 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47142 * 120.00032 * 22 20 18 25 25 H 1.48493 * 109.47083 * 240.00360 * 22 20 18 26 26 H 1.09001 * 109.47134 * 263.17588 * 1 2 3 27 27 H 1.08998 * 109.47322 * 23.17955 * 1 2 3 28 28 H 1.08998 * 109.47087 * 143.17617 * 1 2 3 29 29 H 1.07994 * 119.55372 * 0.25238 * 3 2 1 30 30 H 1.07999 * 119.54891 * 180.02562 * 5 4 3 31 31 H 1.07996 * 120.49805 * 180.02562 * 6 5 4 32 32 H 0.97003 * 120.00192 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46866 * 300.00302 * 13 11 10 34 34 H 1.08998 * 109.46902 * 60.00014 * 13 11 10 35 35 H 1.08997 * 109.47141 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47153 * 180.02562 * 16 14 11 37 37 H 1.09000 * 109.47158 * 299.99776 * 16 14 11 38 38 H 1.09003 * 109.46806 * 60.00060 * 16 14 11 39 39 H 0.97006 * 119.99846 * 24.99105 * 17 14 11 40 40 H 0.97003 * 120.00456 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1906 0.0000 4 7 3.5261 1.1997 -0.0054 5 6 4.2333 0.0873 -0.0106 6 6 3.6137 -1.1472 -0.0100 7 6 2.2165 -1.2045 -0.0059 8 6 1.5079 -2.5055 -0.0066 9 8 0.2987 -2.5387 0.1082 10 7 2.2044 -3.6522 -0.1344 11 6 1.5037 -4.9386 -0.1357 12 1 0.6513 -4.8887 0.5418 13 6 1.0129 -5.2508 -1.5508 14 6 2.4592 -6.0403 0.3273 15 1 2.7393 -5.8655 1.3661 16 6 3.7139 -6.0283 -0.5482 17 7 1.7963 -7.3417 0.2126 18 6 2.1974 -8.3864 1.0018 19 1 3.0028 -8.2510 1.7085 20 6 1.5690 -9.6193 0.8934 21 7 0.5872 -9.7842 0.0325 22 14 2.1167 -11.0447 1.9696 23 1 3.2304 -10.6029 2.8470 24 1 0.9776 -11.4989 2.8071 25 1 2.5772 -12.1650 1.1106 26 1 -0.3633 -0.1221 1.0204 27 1 -0.3634 0.9447 -0.4045 28 1 -0.3633 -0.8226 -0.6159 29 1 1.6690 2.1263 0.0041 30 1 5.3119 0.1419 -0.0145 31 1 4.1995 -2.0545 -0.0138 32 1 3.1697 -3.6256 -0.2263 33 1 0.3322 -4.4659 -1.8807 34 1 1.8654 -5.3007 -2.2283 35 1 0.4920 -6.2082 -1.5518 36 1 4.3945 -6.8134 -0.2186 37 1 3.4339 -6.2032 -1.5870 38 1 4.2072 -5.0600 -0.4628 39 1 1.0731 -7.4634 -0.4224 40 1 0.1483 -10.6459 -0.0435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733975441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = 10.149189 kcal Electronic energy + Delta-G solvation = -21324.795961 eV Core-core repulsion = 18139.910473 eV Total energy + Delta-G solvation = -3184.885489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91536 -39.27938 -37.03293 -34.20461 -33.55289 -32.66116 -31.49234 -29.38717 -28.27424 -27.51082 -25.06048 -24.39445 -23.28323 -22.28741 -20.79406 -19.34009 -18.21339 -17.42851 -16.78484 -15.70189 -15.53890 -15.32756 -15.11913 -14.70765 -14.30043 -14.06573 -13.73925 -13.62771 -13.47984 -12.94021 -12.81441 -12.57470 -12.40235 -11.99996 -11.78849 -11.70226 -11.35166 -10.99773 -10.87688 -10.56762 -10.30058 -10.25308 -10.05130 -10.01332 -9.74896 -9.43520 -9.20579 -8.99834 -8.89248 -7.05730 -5.83002 -3.12889 0.52068 0.80827 2.84128 3.09874 3.39919 3.45696 3.47790 3.61601 4.13816 4.41184 4.50626 4.54910 4.58938 4.74074 5.10769 5.25940 5.38203 5.40069 5.45982 5.55579 5.57570 5.59694 5.63747 5.75224 5.86501 5.98916 6.06376 6.18813 6.22700 6.32785 6.35025 6.42497 6.55452 6.65039 6.82655 7.00549 7.52603 7.63194 7.64827 8.19127 8.35283 9.46825 10.01337 10.36171 11.39549 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033837 B = 0.003526 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.287772 B = 7938.760874 C = 8336.556219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.469 5.469 5 C 0.085 3.915 6 C -0.137 4.137 7 C -0.090 4.090 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.710 5.710 11 C 0.136 3.864 12 H 0.091 0.909 13 C -0.159 4.159 14 C 0.168 3.832 15 H 0.052 0.948 16 C -0.169 4.169 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.397 0.603 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.387 0.613 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 19.747 -2.109 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.067 4.067 4 N -0.178 5.178 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.101 4.101 8 C 0.339 3.661 9 O -0.402 6.402 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.109 0.891 13 C -0.218 4.218 14 C 0.057 3.943 15 H 0.070 0.930 16 C -0.229 4.229 17 N -0.363 5.363 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.157 0.843 32 H 0.234 0.766 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.223 0.777 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.942 20.339 -1.895 21.016 hybrid contribution 0.269 -1.750 0.295 1.795 sum 5.211 18.589 -1.600 19.372 Atomic orbital electron populations 1.20986 0.88964 1.03351 1.04046 1.21149 0.98524 0.92439 0.95922 1.22738 0.89758 0.97384 0.96794 1.67535 1.08337 1.31839 1.10040 1.22701 1.00544 0.87232 0.96680 1.22380 0.93974 1.00261 0.99138 1.20369 0.93790 0.94189 1.01777 1.18149 0.87115 0.83581 0.77289 1.90741 1.13408 1.86933 1.49108 1.46196 1.10986 1.05995 1.73084 1.21405 0.96180 0.81117 0.98171 0.89134 1.22146 1.01187 1.02386 0.96046 1.20362 0.90768 0.86101 0.97083 0.92989 1.22551 0.99818 0.99079 1.01477 1.42454 1.41617 1.05321 1.46860 1.19264 1.14133 0.89403 1.14512 0.91044 1.24748 0.98500 0.97895 0.99593 1.69663 1.25851 1.24011 1.38351 0.86114 0.77706 0.82644 0.79675 1.20541 1.21811 1.21839 0.90267 0.91960 0.88502 0.82204 0.82182 0.84280 0.76594 0.93049 0.92488 0.90319 0.92233 0.92714 0.95053 0.77746 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.82 36.00 0.32 -0.90 16 2 C -0.08 -0.85 5.93 -104.06 -0.62 -1.47 16 3 C 0.09 0.90 10.83 -17.59 -0.19 0.71 16 4 N -0.47 -5.00 10.33 -13.31 -0.14 -5.14 16 5 C 0.08 0.77 11.17 -17.60 -0.20 0.57 16 6 C -0.14 -1.29 9.60 -39.03 -0.37 -1.66 16 7 C -0.09 -1.06 5.91 -104.65 -0.62 -1.68 16 8 C 0.55 7.83 7.70 -12.19 -0.09 7.73 16 9 O -0.52 -8.90 13.20 5.36 0.07 -8.83 16 10 N -0.71 -9.52 4.95 -54.66 -0.27 -9.79 16 11 C 0.14 2.25 2.62 -67.93 -0.18 2.07 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 C -0.16 -2.60 9.00 37.16 0.33 -2.27 16 14 C 0.17 3.11 2.93 -67.93 -0.20 2.91 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 C -0.17 -2.71 9.01 37.16 0.33 -2.37 16 17 N -0.72 -17.18 5.03 -53.42 -0.27 -17.45 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 28 H 0.10 1.22 5.98 -51.93 -0.31 0.91 16 29 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 0.98 6.58 -52.49 -0.35 0.63 16 32 H 0.40 4.34 4.76 -40.82 -0.19 4.15 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 35 H 0.08 1.44 6.29 -51.93 -0.33 1.11 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 38 H 0.03 0.38 6.29 -51.93 -0.33 0.05 16 39 H 0.39 9.77 5.77 -40.82 -0.24 9.54 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -31.48 325.60 -7.04 -38.51 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.31 Total: 11.03 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.73 Total: -3.41 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.05 Total: -59.14 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.48 -7.04 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.663 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds