Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38176 * 120.49372 * 2 1 4 4 N 1.31802 * 120.88929 * 180.27573 * 3 2 1 5 5 C 1.31823 * 122.05004 * 359.97438 * 4 3 2 6 6 C 1.38129 * 120.89991 * 359.97438 * 5 4 3 7 7 C 1.39795 * 120.50261 * 180.27864 * 2 1 3 8 8 C 1.48149 * 120.92011 * 359.74788 * 7 2 1 9 9 O 1.21511 * 120.00088 * 353.98624 * 8 7 2 10 10 N 1.34774 * 119.99978 * 173.99172 * 8 7 2 11 11 C 1.46493 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46854 * 324.99117 * 11 10 8 13 13 C 1.53001 * 109.47708 * 84.99571 * 11 10 8 14 14 C 1.53001 * 109.47293 * 204.99974 * 11 10 8 15 15 H 1.08998 * 109.47564 * 64.99295 * 14 11 10 16 16 C 1.53004 * 109.46865 * 304.99415 * 14 11 10 17 17 N 1.46503 * 109.47490 * 185.00020 * 14 11 10 18 18 C 1.36934 * 120.00184 * 205.00021 * 17 14 11 19 19 H 1.08000 * 119.99813 * 359.97438 * 18 17 14 20 20 C 1.38808 * 120.00062 * 179.97438 * 18 17 14 21 21 N 1.31615 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46673 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47142 * 120.00032 * 22 20 18 25 25 H 1.48493 * 109.47083 * 240.00360 * 22 20 18 26 26 H 1.09001 * 109.47134 * 263.17588 * 1 2 3 27 27 H 1.08998 * 109.47322 * 23.17955 * 1 2 3 28 28 H 1.08998 * 109.47087 * 143.17617 * 1 2 3 29 29 H 1.07994 * 119.55372 * 0.25238 * 3 2 1 30 30 H 1.07999 * 119.54891 * 180.02562 * 5 4 3 31 31 H 1.07996 * 120.49805 * 180.02562 * 6 5 4 32 32 H 0.97003 * 120.00192 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46866 * 300.00302 * 13 11 10 34 34 H 1.08998 * 109.46902 * 60.00014 * 13 11 10 35 35 H 1.08997 * 109.47141 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47153 * 180.02562 * 16 14 11 37 37 H 1.09000 * 109.47158 * 299.99776 * 16 14 11 38 38 H 1.09003 * 109.46806 * 60.00060 * 16 14 11 39 39 H 0.97006 * 119.99846 * 24.99105 * 17 14 11 40 40 H 0.97003 * 120.00456 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1906 0.0000 4 7 3.5261 1.1997 -0.0054 5 6 4.2333 0.0873 -0.0106 6 6 3.6137 -1.1472 -0.0100 7 6 2.2165 -1.2045 -0.0059 8 6 1.5079 -2.5055 -0.0066 9 8 0.2987 -2.5387 0.1082 10 7 2.2044 -3.6522 -0.1344 11 6 1.5037 -4.9386 -0.1357 12 1 0.6513 -4.8887 0.5418 13 6 1.0129 -5.2508 -1.5508 14 6 2.4592 -6.0403 0.3273 15 1 2.7393 -5.8655 1.3661 16 6 3.7139 -6.0283 -0.5482 17 7 1.7963 -7.3417 0.2126 18 6 2.1974 -8.3864 1.0018 19 1 3.0028 -8.2510 1.7085 20 6 1.5690 -9.6193 0.8934 21 7 0.5872 -9.7842 0.0325 22 14 2.1167 -11.0447 1.9696 23 1 3.2304 -10.6029 2.8470 24 1 0.9776 -11.4989 2.8071 25 1 2.5772 -12.1650 1.1106 26 1 -0.3633 -0.1221 1.0204 27 1 -0.3634 0.9447 -0.4045 28 1 -0.3633 -0.8226 -0.6159 29 1 1.6690 2.1263 0.0041 30 1 5.3119 0.1419 -0.0145 31 1 4.1995 -2.0545 -0.0138 32 1 3.1697 -3.6256 -0.2263 33 1 0.3322 -4.4659 -1.8807 34 1 1.8654 -5.3007 -2.2283 35 1 0.4920 -6.2082 -1.5518 36 1 4.3945 -6.8134 -0.2186 37 1 3.4339 -6.2032 -1.5870 38 1 4.2072 -5.0600 -0.4628 39 1 1.0731 -7.4634 -0.4224 40 1 0.1483 -10.6459 -0.0435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733975441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -11.168178 kcal Electronic energy + Delta-G solvation = -21325.720352 eV Core-core repulsion = 18139.910473 eV Total energy + Delta-G solvation = -3185.809879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83495 -40.33497 -38.45575 -35.75554 -34.40273 -33.98306 -32.82059 -30.87220 -29.82150 -28.33408 -26.21796 -25.96521 -24.69839 -23.17473 -21.91412 -20.71594 -19.57188 -19.03376 -17.72460 -16.81742 -16.60698 -16.46869 -16.25612 -16.17245 -15.74098 -15.38158 -14.95946 -14.82117 -14.52430 -14.30076 -13.95788 -13.67665 -13.54289 -13.23482 -13.11364 -12.99639 -12.82932 -12.67050 -12.50934 -12.07876 -12.04472 -11.67522 -11.61397 -11.25084 -10.97143 -10.90330 -10.35886 -10.16987 -9.91056 -9.03853 -7.94174 -5.23021 -0.33342 0.08650 1.48348 1.49191 1.58689 1.82220 1.96083 2.57648 2.81636 3.40013 3.46446 3.51674 3.75473 3.83189 3.88732 3.95110 3.99139 4.06140 4.30609 4.42777 4.58556 4.62245 4.67564 4.75728 4.78589 4.85022 4.85365 4.94334 4.99295 5.10613 5.19115 5.22775 5.37796 5.48687 5.54495 5.62534 5.64196 6.28101 6.44378 6.90495 7.10543 7.34887 8.08789 8.31638 9.29530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033837 B = 0.003526 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.287772 B = 7938.760874 C = 8336.556219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.092 3.908 4 N -0.485 5.485 5 C 0.086 3.914 6 C -0.130 4.130 7 C -0.109 4.109 8 C 0.552 3.448 9 O -0.559 6.559 10 N -0.698 5.698 11 C 0.151 3.849 12 H 0.061 0.939 13 C -0.150 4.150 14 C 0.165 3.835 15 H 0.048 0.952 16 C -0.159 4.159 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.297 1.297 25 H -0.294 1.294 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.185 0.815 30 H 0.193 0.807 31 H 0.165 0.835 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.376 0.624 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 21.507 -1.938 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.066 4.066 4 N -0.193 5.193 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.120 4.120 8 C 0.339 3.661 9 O -0.438 6.438 10 N -0.352 5.352 11 C 0.045 3.955 12 H 0.079 0.921 13 C -0.209 4.209 14 C 0.056 3.944 15 H 0.066 0.934 16 C -0.219 4.219 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.189 1.189 24 H -0.225 1.225 25 H -0.222 1.222 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.202 0.798 30 H 0.210 0.790 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.211 0.789 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.459 22.153 -1.713 23.438 hybrid contribution -0.454 -2.154 0.252 2.215 sum 7.005 19.999 -1.461 21.241 Atomic orbital electron populations 1.20898 0.89089 1.03725 1.03169 1.21283 0.98673 0.92835 0.96500 1.23077 0.89745 0.97807 0.95924 1.67614 1.08650 1.32707 1.10367 1.23256 1.02002 0.86569 0.95205 1.22641 0.92873 1.01655 0.97874 1.20278 0.94977 0.92856 1.03891 1.18565 0.86819 0.84418 0.76257 1.90738 1.15097 1.87485 1.50527 1.45914 1.11532 1.04656 1.73065 1.20937 0.95013 0.82078 0.97475 0.92118 1.22036 1.01575 1.01008 0.96237 1.20541 0.91852 0.84376 0.97647 0.93369 1.22379 0.97980 1.01238 1.00314 1.42658 1.41856 1.06804 1.46330 1.19650 1.13296 0.90071 1.13894 0.90358 1.25527 0.99229 1.00552 1.01431 1.69816 1.27538 1.24183 1.40469 0.85109 0.77339 0.79480 0.78038 1.18882 1.22473 1.22151 0.91092 0.89300 0.91061 0.79827 0.79026 0.81730 0.74832 0.92930 0.90848 0.92783 0.93656 0.92927 0.90447 0.78936 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.82 71.24 0.63 -1.66 16 2 C -0.09 -1.86 5.93 -19.50 -0.12 -1.98 16 3 C 0.09 1.59 10.83 84.68 0.92 2.51 16 4 N -0.48 -8.93 10.33 -196.01 -2.03 -10.95 16 5 C 0.09 1.25 11.17 84.67 0.95 2.20 16 6 C -0.13 -2.02 9.60 22.63 0.22 -1.81 16 7 C -0.11 -2.39 5.91 -19.88 -0.12 -2.50 16 8 C 0.55 15.24 7.70 86.88 0.67 15.91 16 9 O -0.56 -19.38 13.20 -3.75 -0.05 -19.43 16 10 N -0.70 -17.61 4.95 -445.13 -2.20 -19.81 16 11 C 0.15 4.96 2.62 44.99 0.12 5.08 16 12 H 0.06 2.38 7.58 -2.39 -0.02 2.37 16 13 C -0.15 -4.92 9.00 71.98 0.65 -4.27 16 14 C 0.16 5.99 2.93 44.99 0.13 6.12 16 15 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 16 C -0.16 -4.72 9.01 71.98 0.65 -4.07 16 17 N -0.73 -35.43 5.03 -322.93 -1.63 -37.05 16 18 C -0.24 -12.74 9.93 84.03 0.83 -11.91 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 21 N -0.97 -58.65 13.06 21.65 0.28 -58.36 16 22 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 28 H 0.07 1.85 5.98 -2.39 -0.01 1.83 16 29 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.17 1.58 6.58 -2.91 -0.02 1.56 16 32 H 0.41 7.67 4.76 -92.71 -0.44 7.23 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 2.13 6.56 -2.39 -0.02 2.12 16 35 H 0.05 2.05 6.29 -2.39 -0.02 2.03 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.05 1.59 6.57 -2.39 -0.02 1.58 16 38 H 0.08 1.56 6.29 -2.39 -0.02 1.54 16 39 H 0.38 19.60 5.77 -92.70 -0.54 19.07 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.58 325.60 2.49 -67.09 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.09 Total: 31.17 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.99 Total: -0.15 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -5.57 Total: -126.18 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.58 2.49 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.920 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds