Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38627 * 120.47063 * 2 1 4 4 C 1.38582 * 118.49488 * 180.25370 * 3 2 1 5 5 C 1.38610 * 119.34840 * 0.04285 * 4 3 2 6 6 N 1.31495 * 120.89727 * 359.95566 * 5 4 3 7 7 C 1.32746 * 121.64720 * 0.02562 * 6 5 4 8 8 C 1.48164 * 119.72425 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00168 * 174.14061 * 8 7 6 10 10 N 1.34778 * 119.99915 * 354.13709 * 8 7 6 11 11 C 1.46507 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46935 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47128 * 64.99930 * 12 11 10 14 14 C 1.53002 * 109.47116 * 185.00287 * 12 11 10 15 15 N 1.46508 * 109.46963 * 304.99906 * 12 11 10 16 16 C 1.46497 * 120.00017 * 299.99656 * 15 12 11 17 17 C 1.36941 * 119.99765 * 120.00530 * 15 12 11 18 18 H 1.07996 * 119.99992 * 25.58507 * 17 15 12 19 19 C 1.38811 * 119.99237 * 205.58816 * 17 15 12 20 20 N 1.31614 * 120.00916 * 19.29983 * 19 17 15 21 21 Si 1.86810 * 119.99453 * 199.30131 * 19 17 15 22 22 H 1.48494 * 109.47204 * 94.98844 * 21 19 17 23 23 H 1.48497 * 109.47004 * 214.99233 * 21 19 17 24 24 H 1.48506 * 109.47126 * 334.98892 * 21 19 17 25 25 H 1.09001 * 109.47091 * 263.00890 * 1 2 3 26 26 H 1.09000 * 109.47333 * 23.01168 * 1 2 3 27 27 H 1.09001 * 109.46966 * 143.01400 * 1 2 3 28 28 H 1.08005 * 120.75317 * 0.27505 * 3 2 1 29 29 H 1.07993 * 120.33026 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.54933 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00193 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.47223 * 299.99712 * 11 10 8 33 33 H 1.08998 * 109.46978 * 60.00200 * 11 10 8 34 34 H 1.09000 * 109.47413 * 59.99817 * 14 12 11 35 35 H 1.08996 * 109.47148 * 180.02562 * 14 12 11 36 36 H 1.09010 * 109.46502 * 299.99902 * 14 12 11 37 37 H 1.09004 * 109.46685 * 95.03754 * 16 15 12 38 38 H 1.08995 * 109.47136 * 215.03429 * 16 15 12 39 39 H 1.08996 * 109.47090 * 335.03703 * 16 15 12 40 40 H 0.96996 * 120.00897 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0054 5 6 4.2322 -0.0839 -0.0115 6 7 3.5406 -1.2023 -0.0113 7 6 2.2132 -1.2004 -0.0059 8 6 1.4767 -2.4860 -0.0065 9 8 0.2668 -2.4932 0.1058 10 7 2.1487 -3.6475 -0.1318 11 6 1.4204 -4.9187 -0.1330 12 6 2.4114 -6.0741 -0.2883 13 1 3.0615 -6.1150 0.5857 14 6 1.6433 -7.3913 -0.4148 15 7 3.2219 -5.8640 -1.4905 16 6 2.5764 -5.7728 -2.8024 17 6 4.5829 -5.7531 -1.3879 18 1 5.1008 -6.2093 -0.5572 19 6 5.2968 -5.0542 -2.3516 20 7 4.6794 -4.1940 -3.1333 21 14 7.1342 -5.3349 -2.5393 22 1 7.3748 -6.3444 -3.6013 23 1 7.7945 -4.0578 -2.9113 24 1 7.6938 -5.8254 -1.2541 25 1 -0.3633 -0.1251 1.0200 26 1 -0.3634 0.9459 -0.4017 27 1 -0.3633 -0.8209 -0.6183 28 1 1.6900 2.1415 0.0045 29 1 4.1721 2.0598 -0.0051 30 1 5.3114 -0.1249 -0.0161 31 1 3.1145 -3.6418 -0.2220 32 1 0.8787 -5.0280 0.8064 33 1 0.7144 -4.9321 -0.9633 34 1 0.9932 -7.3503 -1.2887 35 1 2.3493 -8.2144 -0.5249 36 1 1.0402 -7.5475 0.4798 37 1 2.4055 -4.7254 -3.0512 38 1 3.2205 -6.2249 -3.5565 39 1 1.6228 -6.3002 -2.7756 40 1 5.1783 -3.7054 -3.8065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734035068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = 21.436078 kcal Electronic energy + Delta-G solvation = -22094.553956 eV Core-core repulsion = 18910.157904 eV Total energy + Delta-G solvation = -3184.396052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39532 -38.49025 -36.62939 -33.96836 -33.04667 -32.10042 -31.57103 -29.32040 -27.42113 -25.96999 -25.74272 -23.94512 -22.96097 -21.93116 -20.12811 -19.28282 -17.44483 -16.84644 -16.50973 -15.48695 -15.25879 -15.05141 -14.77136 -14.45705 -14.05443 -13.41890 -13.28110 -12.99570 -12.79004 -12.57313 -12.50363 -12.19873 -12.07138 -11.93316 -11.78633 -11.56875 -11.09009 -10.76167 -10.66757 -10.42730 -10.24465 -9.83414 -9.73570 -9.68367 -9.59169 -8.99500 -8.83376 -8.52091 -8.20432 -6.71924 -5.71365 -3.18860 0.91651 1.39128 3.20305 3.39290 3.47155 3.47576 3.76253 4.18531 4.50604 4.54093 4.86942 5.00675 5.05604 5.16902 5.40826 5.44066 5.52050 5.66034 5.74460 5.83396 5.92369 6.01498 6.13280 6.13925 6.18333 6.25993 6.37138 6.42497 6.49379 6.71390 6.81313 6.82910 6.93999 7.22257 7.31613 7.71803 7.83942 7.99358 8.39639 8.41330 8.87352 9.23088 9.87451 10.38839 11.31183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.006776 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.966816 B = 4131.227210 C = 5552.072838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.154 4.154 5 C 0.092 3.908 6 N -0.436 5.436 7 C 0.084 3.916 8 C 0.562 3.438 9 O -0.555 6.555 10 N -0.675 5.675 11 C 0.105 3.895 12 C 0.156 3.844 13 H 0.069 0.931 14 C -0.157 4.157 15 N -0.589 5.589 16 C 0.157 3.843 17 C -0.267 4.267 18 H 0.066 0.934 19 C 0.013 3.987 20 N -0.888 5.888 21 Si 0.897 3.103 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.279 1.279 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.427 0.573 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.004 0.996 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 7.922 6.281 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.119 4.119 4 C -0.174 4.174 5 C -0.068 4.068 6 N -0.146 5.146 7 C -0.055 4.055 8 C 0.346 3.654 9 O -0.435 6.435 10 N -0.325 5.325 11 C -0.021 4.021 12 C 0.048 3.952 13 H 0.087 0.913 14 C -0.216 4.216 15 N -0.312 5.312 16 C 0.013 3.987 17 C -0.396 4.396 18 H 0.084 0.916 19 C -0.187 4.187 20 N -0.531 5.531 21 Si 0.727 3.273 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.205 1.205 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.267 0.733 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.126 7.136 6.198 10.752 hybrid contribution 1.250 0.895 -0.427 1.595 sum -3.876 8.030 5.771 10.621 Atomic orbital electron populations 1.21004 0.89288 1.02926 1.03701 1.20921 0.98247 0.92501 0.96812 1.21454 0.94141 0.97826 0.98441 1.22313 0.95232 0.99684 1.00205 1.22798 1.00552 0.87253 0.96175 1.67672 1.07002 1.31605 1.08303 1.21159 0.89900 0.93821 1.00572 1.17841 0.86399 0.83424 0.77694 1.90652 1.13296 1.87007 1.52584 1.45782 1.13202 1.04445 1.69050 1.22011 0.95547 0.84355 1.00223 1.20682 0.91750 0.91031 0.91778 0.91278 1.22162 1.00186 0.98834 1.00465 1.43904 1.02918 1.84261 1.00126 1.20738 0.92665 0.98829 0.86510 1.19120 0.81687 1.28307 1.10477 0.91644 1.24965 0.97470 0.96130 1.00137 1.70095 1.34940 1.24846 1.23224 0.86369 0.85983 0.77025 0.77897 1.21757 1.21970 1.20456 0.90749 0.92727 0.88215 0.84641 0.84682 0.82367 0.73323 0.92765 0.92318 0.93011 0.92424 0.93578 0.95045 0.94845 0.97784 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.73 36.00 0.31 -1.26 16 2 C -0.08 -1.28 5.93 -104.10 -0.62 -1.89 16 3 C -0.09 -1.16 9.83 -39.31 -0.39 -1.55 16 4 C -0.15 -1.86 10.12 -39.32 -0.40 -2.26 16 5 C 0.09 1.38 11.18 -17.56 -0.20 1.18 16 6 N -0.44 -8.21 9.56 -9.80 -0.09 -8.30 16 7 C 0.08 1.58 6.75 -83.01 -0.56 1.02 16 8 C 0.56 11.53 7.75 -12.18 -0.09 11.44 16 9 O -0.55 -11.62 13.32 5.35 0.07 -11.55 16 10 N -0.67 -14.23 5.38 -61.15 -0.33 -14.56 16 11 C 0.10 2.04 4.97 -4.04 -0.02 2.02 16 12 C 0.16 3.09 2.87 -67.92 -0.19 2.89 16 13 H 0.07 1.37 7.88 -51.93 -0.41 0.96 16 14 C -0.16 -2.63 9.18 37.16 0.34 -2.29 16 15 N -0.59 -13.96 2.27 -173.48 -0.39 -14.35 16 16 C 0.16 3.78 8.18 59.85 0.49 4.27 16 17 C -0.27 -6.95 9.23 -15.06 -0.14 -7.09 16 18 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 20 N -0.89 -24.92 11.25 55.49 0.62 -24.30 16 21 Si 0.90 21.38 29.60 -169.99 -5.03 16.34 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 27 H 0.10 1.65 5.87 -51.93 -0.30 1.34 16 28 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.43 9.88 7.24 -40.82 -0.30 9.59 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.03 0.84 7.30 -51.93 -0.38 0.46 16 38 H 0.03 0.86 7.65 -51.93 -0.40 0.46 16 39 H 0.00 0.08 6.44 -51.93 -0.33 -0.26 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -29.91 330.24 -7.52 -37.43 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.80 Total: 7.56 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.55 Total: 6.75 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.19 Total: -61.51 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.91 -7.52 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734035068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.869 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds