Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38627 * 120.47063 * 2 1 4 4 C 1.38582 * 118.49488 * 180.25370 * 3 2 1 5 5 C 1.38610 * 119.34840 * 0.04285 * 4 3 2 6 6 N 1.31495 * 120.89727 * 359.95566 * 5 4 3 7 7 C 1.32746 * 121.64720 * 0.02562 * 6 5 4 8 8 C 1.48164 * 119.72425 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00168 * 174.14061 * 8 7 6 10 10 N 1.34778 * 119.99915 * 354.13709 * 8 7 6 11 11 C 1.46507 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46935 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47128 * 64.99930 * 12 11 10 14 14 C 1.53002 * 109.47116 * 185.00287 * 12 11 10 15 15 N 1.46508 * 109.46963 * 304.99906 * 12 11 10 16 16 C 1.46497 * 120.00017 * 299.99656 * 15 12 11 17 17 C 1.36941 * 119.99765 * 120.00530 * 15 12 11 18 18 H 1.07996 * 119.99992 * 25.58507 * 17 15 12 19 19 C 1.38811 * 119.99237 * 205.58816 * 17 15 12 20 20 N 1.31614 * 120.00916 * 19.29983 * 19 17 15 21 21 Si 1.86810 * 119.99453 * 199.30131 * 19 17 15 22 22 H 1.48494 * 109.47204 * 94.98844 * 21 19 17 23 23 H 1.48497 * 109.47004 * 214.99233 * 21 19 17 24 24 H 1.48506 * 109.47126 * 334.98892 * 21 19 17 25 25 H 1.09001 * 109.47091 * 263.00890 * 1 2 3 26 26 H 1.09000 * 109.47333 * 23.01168 * 1 2 3 27 27 H 1.09001 * 109.46966 * 143.01400 * 1 2 3 28 28 H 1.08005 * 120.75317 * 0.27505 * 3 2 1 29 29 H 1.07993 * 120.33026 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.54933 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00193 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.47223 * 299.99712 * 11 10 8 33 33 H 1.08998 * 109.46978 * 60.00200 * 11 10 8 34 34 H 1.09000 * 109.47413 * 59.99817 * 14 12 11 35 35 H 1.08996 * 109.47148 * 180.02562 * 14 12 11 36 36 H 1.09010 * 109.46502 * 299.99902 * 14 12 11 37 37 H 1.09004 * 109.46685 * 95.03754 * 16 15 12 38 38 H 1.08995 * 109.47136 * 215.03429 * 16 15 12 39 39 H 1.08996 * 109.47090 * 335.03703 * 16 15 12 40 40 H 0.96996 * 120.00897 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0054 5 6 4.2322 -0.0839 -0.0115 6 7 3.5406 -1.2023 -0.0113 7 6 2.2132 -1.2004 -0.0059 8 6 1.4767 -2.4860 -0.0065 9 8 0.2668 -2.4932 0.1058 10 7 2.1487 -3.6475 -0.1318 11 6 1.4204 -4.9187 -0.1330 12 6 2.4114 -6.0741 -0.2883 13 1 3.0615 -6.1150 0.5857 14 6 1.6433 -7.3913 -0.4148 15 7 3.2219 -5.8640 -1.4905 16 6 2.5764 -5.7728 -2.8024 17 6 4.5829 -5.7531 -1.3879 18 1 5.1008 -6.2093 -0.5572 19 6 5.2968 -5.0542 -2.3516 20 7 4.6794 -4.1940 -3.1333 21 14 7.1342 -5.3349 -2.5393 22 1 7.3748 -6.3444 -3.6013 23 1 7.7945 -4.0578 -2.9113 24 1 7.6938 -5.8254 -1.2541 25 1 -0.3633 -0.1251 1.0200 26 1 -0.3634 0.9459 -0.4017 27 1 -0.3633 -0.8209 -0.6183 28 1 1.6900 2.1415 0.0045 29 1 4.1721 2.0598 -0.0051 30 1 5.3114 -0.1249 -0.0161 31 1 3.1145 -3.6418 -0.2220 32 1 0.8787 -5.0280 0.8064 33 1 0.7144 -4.9321 -0.9633 34 1 0.9932 -7.3503 -1.2887 35 1 2.3493 -8.2144 -0.5249 36 1 1.0402 -7.5475 0.4798 37 1 2.4055 -4.7254 -3.0512 38 1 3.2205 -6.2249 -3.5565 39 1 1.6228 -6.3002 -2.7756 40 1 5.1783 -3.7054 -3.8065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734035068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = 2.335929 kcal Electronic energy + Delta-G solvation = -22095.382201 eV Core-core repulsion = 18910.157904 eV Total energy + Delta-G solvation = -3185.224297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66118 -39.94042 -38.34322 -35.53580 -34.45302 -33.68022 -32.86247 -31.12500 -28.62406 -27.96285 -27.11764 -25.29886 -24.74679 -23.07592 -21.56925 -20.96927 -18.89995 -18.74731 -17.76857 -17.07852 -16.71761 -16.38434 -16.34301 -15.89177 -15.69644 -14.90380 -14.78784 -14.50432 -14.28834 -13.99377 -13.72749 -13.66681 -13.57634 -13.31230 -13.14828 -12.89175 -12.85553 -12.60572 -12.45027 -12.29114 -12.07428 -11.74521 -11.46327 -11.00025 -10.72735 -10.56854 -10.28245 -10.11325 -9.71700 -8.70537 -7.75570 -5.24751 -0.27062 0.30870 1.48100 1.50841 1.58246 1.80703 2.33257 2.55284 2.92740 3.30482 3.36560 3.66291 3.83504 3.89152 4.02277 4.07376 4.08683 4.40312 4.53758 4.59730 4.62646 4.70656 4.78397 4.81471 4.82931 4.85031 5.08818 5.11302 5.18155 5.22496 5.28364 5.35265 5.48956 5.63693 5.70147 5.74165 5.76010 6.38949 6.60736 6.95692 7.19923 7.28063 7.91576 8.38913 9.24663 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.006776 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.966816 B = 4131.227210 C = 5552.072838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.085 4.085 4 C -0.131 4.131 5 C 0.072 3.928 6 N -0.478 5.478 7 C 0.042 3.958 8 C 0.554 3.446 9 O -0.569 6.569 10 N -0.686 5.686 11 C 0.111 3.889 12 C 0.154 3.846 13 H 0.068 0.932 14 C -0.146 4.146 15 N -0.597 5.597 16 C 0.176 3.824 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.034 4.034 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.294 1.294 23 H -0.299 1.299 24 H -0.269 1.269 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.180 0.820 29 H 0.183 0.817 30 H 0.175 0.825 31 H 0.416 0.584 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.077 0.923 37 H -0.002 1.002 38 H 0.009 0.991 39 H 0.032 0.968 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 9.430 7.303 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.111 4.111 4 C -0.150 4.150 5 C -0.088 4.088 6 N -0.189 5.189 7 C -0.095 4.095 8 C 0.340 3.660 9 O -0.450 6.450 10 N -0.335 5.335 11 C -0.015 4.015 12 C 0.047 3.953 13 H 0.086 0.914 14 C -0.205 4.205 15 N -0.320 5.320 16 C 0.031 3.969 17 C -0.396 4.396 18 H 0.084 0.916 19 C -0.232 4.232 20 N -0.560 5.560 21 Si 0.784 3.216 22 H -0.221 1.221 23 H -0.226 1.226 24 H -0.194 1.194 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.200 0.800 30 H 0.192 0.808 31 H 0.253 0.747 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.017 0.983 38 H 0.028 0.972 39 H 0.050 0.950 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.122 8.616 7.254 12.373 hybrid contribution 1.233 0.504 -0.689 1.499 sum -3.890 9.120 6.565 11.891 Atomic orbital electron populations 1.20933 0.88552 1.03508 1.03343 1.21208 0.98977 0.92665 0.96346 1.21966 0.94441 0.98201 0.96456 1.22787 0.95460 1.00095 0.96677 1.23290 1.01461 0.87725 0.96350 1.67532 1.07458 1.34052 1.09894 1.21024 0.90357 0.93872 1.04238 1.18319 0.86528 0.84183 0.76986 1.90625 1.13718 1.87457 1.53235 1.45888 1.12580 1.05290 1.69717 1.21978 0.95128 0.83863 1.00557 1.20881 0.91743 0.92628 0.90076 0.91389 1.22035 0.99983 0.96456 1.02029 1.44030 1.02725 1.84148 1.01141 1.20422 0.93318 0.96858 0.86347 1.19358 0.83003 1.27220 1.10064 0.91561 1.25590 1.00832 0.96313 1.00421 1.70255 1.35915 1.25986 1.23875 0.85448 0.81992 0.76266 0.77844 1.22137 1.22571 1.19407 0.90591 0.89245 0.91311 0.80239 0.80006 0.80811 0.74692 0.90931 0.93598 0.93083 0.92622 0.90388 0.98338 0.97219 0.95001 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.88 8.73 71.23 0.62 -2.26 16 2 C -0.09 -2.67 5.93 -19.52 -0.12 -2.78 16 3 C -0.09 -1.83 9.83 22.44 0.22 -1.61 16 4 C -0.13 -2.69 10.12 22.44 0.23 -2.46 16 5 C 0.07 2.08 11.18 84.83 0.95 3.03 16 6 N -0.48 -18.41 9.56 -184.91 -1.77 -20.17 16 7 C 0.04 1.61 6.75 41.89 0.28 1.89 16 8 C 0.55 23.63 7.75 86.88 0.67 24.30 16 9 O -0.57 -24.62 13.32 -3.77 -0.05 -24.67 16 10 N -0.69 -30.03 5.38 -465.65 -2.50 -32.53 16 11 C 0.11 4.34 4.97 86.38 0.43 4.77 16 12 C 0.15 6.04 2.87 44.99 0.13 6.17 16 13 H 0.07 2.68 7.88 -2.39 -0.02 2.66 16 14 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 15 N -0.60 -28.67 2.27 -702.77 -1.59 -30.26 16 16 C 0.18 8.66 8.18 127.77 1.05 9.71 16 17 C -0.27 -14.07 9.23 84.03 0.78 -13.29 16 18 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 19 C -0.03 -1.86 4.97 84.86 0.42 -1.44 16 20 N -0.92 -53.05 11.25 21.65 0.24 -52.81 16 21 Si 0.95 44.60 29.60 68.60 2.03 46.63 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 1.73 8.05 -2.39 -0.02 1.71 16 27 H 0.07 2.31 5.87 -2.39 -0.01 2.30 16 28 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.42 20.12 7.24 -92.71 -0.67 19.45 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16 34 H 0.05 1.62 6.66 -2.39 -0.02 1.61 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.00 -0.09 7.30 -2.38 -0.02 -0.11 16 38 H 0.01 0.49 7.65 -2.39 -0.02 0.47 16 39 H 0.03 1.36 6.44 -2.39 -0.02 1.34 16 40 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -68.05 330.24 3.05 -65.00 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.37 Total: 26.76 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.32 Total: 22.06 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -5.62 Total: -135.78 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.05 3.05 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734035068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.336 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds