Wall clock time and date at job start Mon Mar 30 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38639 * 120.46508 * 2 1 4 4 C 1.38581 * 118.48430 * 180.02562 * 3 2 1 5 5 C 1.38604 * 119.35233 * 359.97438 * 4 3 2 6 6 N 1.31491 * 120.90578 * 359.72146 * 5 4 3 7 7 C 1.32750 * 121.63779 * 0.57049 * 6 5 4 8 8 C 1.48165 * 119.72565 * 179.70887 * 7 6 5 9 9 O 1.21517 * 120.00383 * 173.79685 * 8 7 6 10 10 N 1.34776 * 119.99427 * 353.80247 * 8 7 6 11 11 C 1.46503 * 119.99673 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47159 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.46877 * 294.99994 * 12 11 10 14 14 C 1.53002 * 109.47223 * 175.00427 * 12 11 10 15 15 N 1.46494 * 109.47187 * 54.99745 * 12 11 10 16 16 C 1.46503 * 119.99890 * 60.00167 * 15 12 11 17 17 C 1.36932 * 120.00290 * 239.99948 * 15 12 11 18 18 H 1.08006 * 119.99992 * 24.29917 * 17 15 12 19 19 C 1.38814 * 120.00363 * 204.29937 * 17 15 12 20 20 N 1.31620 * 119.99749 * 14.00510 * 19 17 15 21 21 Si 1.86804 * 120.00335 * 194.01117 * 19 17 15 22 22 H 1.48497 * 109.46838 * 59.99690 * 21 19 17 23 23 H 1.48495 * 109.47279 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46733 * 299.99811 * 21 19 17 25 25 H 1.08997 * 109.46678 * 263.38588 * 1 2 3 26 26 H 1.08992 * 109.47088 * 23.38527 * 1 2 3 27 27 H 1.08994 * 109.46845 * 143.38963 * 1 2 3 28 28 H 1.08000 * 120.75582 * 0.03594 * 3 2 1 29 29 H 1.08002 * 120.32328 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.54588 * 179.97438 * 5 4 3 31 31 H 0.96997 * 120.00842 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47159 * 59.99729 * 11 10 8 33 33 H 1.09000 * 109.47474 * 299.99766 * 11 10 8 34 34 H 1.08999 * 109.47727 * 59.99728 * 14 12 11 35 35 H 1.08999 * 109.47282 * 180.02562 * 14 12 11 36 36 H 1.08999 * 109.46584 * 299.99406 * 14 12 11 37 37 H 1.09006 * 109.46958 * 93.29535 * 16 15 12 38 38 H 1.08997 * 109.47454 * 213.29268 * 16 15 12 39 39 H 1.09001 * 109.46728 * 333.29656 * 16 15 12 40 40 H 0.97001 * 120.00047 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1471 -0.0005 5 6 4.2322 -0.0838 -0.0005 6 7 3.5408 -1.2022 0.0055 7 6 2.2133 -1.2003 0.0005 8 6 1.4768 -2.4859 0.0011 9 8 0.2666 -2.4928 0.1102 10 7 2.1492 -3.6477 -0.1194 11 6 1.4211 -4.9190 -0.1182 12 6 2.4124 -6.0747 -0.2680 13 1 2.8918 -6.0178 -1.2453 14 6 1.6675 -7.4052 -0.1421 15 7 3.4306 -5.9838 0.7813 16 6 3.0361 -6.0363 2.1913 17 6 4.7510 -5.8497 0.4444 18 1 5.0243 -5.4267 -0.5111 19 6 5.7385 -6.2574 1.3308 20 7 5.4262 -7.0152 2.3607 21 14 7.5104 -5.7304 1.0621 22 1 7.5952 -4.2481 1.0876 23 1 8.3630 -6.2931 2.1399 24 1 7.9813 -6.2307 -0.2543 25 1 -0.3632 -0.1184 1.0208 26 1 -0.3633 0.9432 -0.4079 27 1 -0.3633 -0.8249 -0.6128 28 1 1.6900 2.1416 0.0006 29 1 4.1721 2.0599 -0.0010 30 1 5.3114 -0.1248 -0.0014 31 1 3.1152 -3.6423 -0.2068 32 1 0.7166 -4.9349 -0.9499 33 1 0.8774 -5.0255 0.8205 34 1 0.9099 -7.4729 -0.9228 35 1 2.3738 -8.2286 -0.2483 36 1 1.1882 -7.4620 0.8352 37 1 3.0961 -7.0649 2.5472 38 1 3.7055 -5.4087 2.7795 39 1 2.0132 -5.6747 2.2960 40 1 6.1161 -7.2998 2.9803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734035069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:59 Heat of formation + Delta-G solvation = 2.217614 kcal Electronic energy + Delta-G solvation = -21846.582935 eV Core-core repulsion = 18661.353507 eV Total energy + Delta-G solvation = -3185.229428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70545 -39.99128 -38.38182 -35.61997 -34.47973 -33.67682 -32.87125 -31.15535 -28.64703 -28.01353 -27.14835 -25.31007 -24.77970 -23.09575 -21.63686 -21.00031 -19.01198 -18.72281 -17.78130 -17.17632 -16.66645 -16.48574 -16.35298 -15.83823 -15.78460 -14.91003 -14.78937 -14.50640 -14.38573 -14.01301 -13.88362 -13.66265 -13.53951 -13.22332 -13.03470 -12.91271 -12.82789 -12.62836 -12.49778 -12.32268 -12.13050 -11.79824 -11.52185 -11.02864 -10.75531 -10.59615 -10.33084 -10.15291 -9.77145 -8.74944 -7.78792 -5.27141 -0.30275 0.27867 1.48509 1.51441 1.57087 1.77070 2.25114 2.54039 2.88113 3.25797 3.36230 3.64192 3.80915 3.88314 4.00026 4.04304 4.07261 4.35486 4.52093 4.57137 4.61100 4.70111 4.75325 4.80375 4.82295 4.91561 5.02925 5.10982 5.18176 5.21359 5.31466 5.36955 5.43389 5.59932 5.68900 5.70885 5.73480 6.36762 6.53823 6.89859 7.17539 7.22933 7.89220 8.35394 9.24779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.005963 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.638241 B = 4694.525204 C = 6079.472311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.129 4.129 5 C 0.074 3.926 6 N -0.483 5.483 7 C 0.041 3.959 8 C 0.556 3.444 9 O -0.564 6.564 10 N -0.691 5.691 11 C 0.114 3.886 12 C 0.155 3.845 13 H 0.071 0.929 14 C -0.146 4.146 15 N -0.601 5.601 16 C 0.186 3.814 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.937 5.937 21 Si 0.963 3.037 22 H -0.278 1.278 23 H -0.300 1.300 24 H -0.275 1.275 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.414 0.586 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.004 0.996 38 H 0.009 0.991 39 H 0.018 0.982 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 16.772 -6.532 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.149 4.149 5 C -0.086 4.086 6 N -0.194 5.194 7 C -0.096 4.096 8 C 0.342 3.658 9 O -0.445 6.445 10 N -0.340 5.340 11 C -0.011 4.011 12 C 0.048 3.952 13 H 0.089 0.911 14 C -0.205 4.205 15 N -0.324 5.324 16 C 0.040 3.960 17 C -0.386 4.386 18 H 0.090 0.910 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.792 3.208 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.201 1.201 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.196 0.804 29 H 0.199 0.801 30 H 0.196 0.804 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.833 15.811 -6.329 18.351 hybrid contribution 1.259 0.327 0.403 1.362 sum -5.574 16.138 -5.927 18.073 Atomic orbital electron populations 1.20961 0.88616 1.03834 1.03205 1.21195 0.98914 0.92642 0.96112 1.21984 0.94504 0.98240 0.96263 1.22805 0.95400 1.00238 0.96424 1.23332 1.01586 0.87581 0.96130 1.67538 1.07374 1.34107 1.10426 1.20976 0.90336 0.93697 1.04569 1.18313 0.86556 0.84031 0.76883 1.90656 1.13860 1.87426 1.52512 1.45879 1.12276 1.05213 1.70676 1.21879 0.94912 0.83095 1.01249 1.20803 0.89182 0.92625 0.92598 0.91102 1.22048 0.99833 0.97066 1.01584 1.44051 1.02415 1.85059 1.00845 1.20344 0.93585 0.97336 0.84696 1.19447 0.82745 1.33406 1.02985 0.90970 1.25730 1.01513 0.98442 0.98782 1.70224 1.32916 1.37989 1.17267 0.85406 0.80521 0.78055 0.76865 1.20415 1.22630 1.20096 0.91220 0.89144 0.90653 0.80397 0.80055 0.80404 0.74945 0.90302 0.93066 0.90286 0.93986 0.93651 0.97819 0.97213 0.96330 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.74 71.24 0.62 -1.91 16 2 C -0.09 -2.18 5.93 -19.52 -0.12 -2.29 16 3 C -0.08 -1.46 9.83 22.45 0.22 -1.24 16 4 C -0.13 -2.09 10.11 22.44 0.23 -1.86 16 5 C 0.07 1.74 11.18 84.83 0.95 2.69 16 6 N -0.48 -15.77 9.56 -184.91 -1.77 -17.54 16 7 C 0.04 1.34 6.75 41.89 0.28 1.63 16 8 C 0.56 20.84 7.75 86.88 0.67 21.51 16 9 O -0.56 -22.03 13.31 -3.77 -0.05 -22.08 16 10 N -0.69 -26.63 5.38 -465.65 -2.50 -29.13 16 11 C 0.11 4.17 4.93 86.38 0.43 4.59 16 12 C 0.16 6.12 2.87 44.99 0.13 6.25 16 13 H 0.07 2.77 7.87 -2.38 -0.02 2.75 16 14 C -0.15 -5.14 9.19 71.98 0.66 -4.48 16 15 N -0.60 -29.32 2.28 -702.76 -1.60 -30.93 16 16 C 0.19 9.43 8.03 127.77 1.03 10.45 16 17 C -0.26 -13.67 9.29 84.03 0.78 -12.89 16 18 H 0.07 3.72 7.84 -2.91 -0.02 3.69 16 19 C -0.05 -2.75 5.06 84.86 0.43 -2.32 16 20 N -0.94 -55.79 10.86 21.65 0.24 -55.55 16 21 Si 0.96 45.04 29.58 68.60 2.03 47.07 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 27 H 0.07 2.14 5.85 -2.39 -0.01 2.13 16 28 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 30 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.41 17.11 7.24 -92.71 -0.67 16.43 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.05 1.98 6.87 -2.39 -0.02 1.97 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.62 7.67 -2.39 -0.02 1.61 16 37 H 0.00 0.20 7.42 -2.38 -0.02 0.18 16 38 H 0.01 0.51 7.33 -2.39 -0.02 0.50 16 39 H 0.02 0.84 6.53 -2.39 -0.02 0.83 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.02 329.67 3.02 -66.00 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.37 Total: 22.03 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 6.31 Total: 20.13 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -5.64 Total: -133.15 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.02 3.02 -66.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734035069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.215 kcal (2) G-P(sol) polarization free energy of solvation -69.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds