Wall clock time and date at job start Mon Mar 30 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39839 * 126.45455 * 2 1 4 4 C 1.35452 * 107.86271 * 180.26341 * 3 2 1 5 5 N 1.35525 * 108.87395 * 359.74497 * 4 3 2 6 6 H 0.96998 * 125.68287 * 180.02562 * 5 4 3 7 7 C 1.37655 * 108.64376 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23468 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00097 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99703 * 0.02562 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72441 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08992 * 109.46993 * 295.00086 * 12 11 10 14 14 N 1.46506 * 109.46943 * 54.99919 * 12 11 10 15 15 C 1.36929 * 119.99909 * 205.00011 * 14 12 11 16 16 H 1.08006 * 120.00094 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99837 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99700 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46894 * 89.99854 * 19 17 15 21 21 H 1.48503 * 109.47027 * 209.99791 * 19 17 15 22 22 H 1.48497 * 109.47103 * 329.99872 * 19 17 15 23 23 C 1.52995 * 109.47195 * 174.99817 * 12 11 10 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 12 11 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 12 11 26 26 H 1.09006 * 109.46972 * 270.18088 * 1 2 3 27 27 H 1.08993 * 109.47246 * 30.18149 * 1 2 3 28 28 H 1.09001 * 109.46620 * 150.18607 * 1 2 3 29 29 H 1.08005 * 126.07122 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.56004 * 179.71291 * 4 3 2 31 31 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 32 32 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 33 33 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 34 34 H 0.97002 * 119.99781 * 25.00223 * 14 12 11 35 35 H 0.97002 * 120.00092 * 179.97438 * 18 17 15 36 36 H 1.09006 * 115.55266 * 34.42181 * 23 12 11 37 37 H 1.08993 * 117.49781 * 359.97438 * 24 23 12 38 38 H 1.09000 * 117.50138 * 145.02405 * 24 23 12 39 39 H 1.09009 * 117.50018 * 214.98040 * 25 23 12 40 40 H 1.08997 * 117.49907 * 0.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6218 0.6929 -0.0059 5 7 3.6285 -0.6623 -0.0039 6 1 4.4191 -1.2242 -0.0068 7 6 2.3263 -1.1088 0.0040 8 6 1.8900 -2.5092 0.0090 9 8 0.7028 -2.7766 0.0155 10 7 2.8039 -3.4998 0.0065 11 6 2.3681 -4.8984 0.0176 12 6 3.5936 -5.8145 0.0190 13 1 4.1409 -5.6904 -0.9153 14 7 4.4634 -5.4646 1.1448 15 6 5.8020 -5.7475 1.0894 16 1 6.2167 -6.2282 0.2155 17 6 6.6262 -5.4165 2.1562 18 7 7.9128 -5.6890 2.1031 19 14 5.9089 -4.5859 3.6678 20 1 5.4782 -5.6196 4.6431 21 1 6.9392 -3.7164 4.2905 22 1 4.7392 -3.7614 3.2713 23 6 3.1422 -7.2699 0.1564 24 6 3.4739 -7.9921 1.4638 25 6 4.2284 -8.3471 0.1801 26 1 -0.3633 0.0032 1.0277 27 1 -0.3633 0.8883 -0.5166 28 1 -0.3632 -0.8917 -0.5110 29 1 2.0136 2.1550 0.0004 30 1 4.4972 1.3254 -0.0118 31 1 3.7502 -3.2867 0.0017 32 1 1.7729 -5.0865 0.9113 33 1 1.7660 -5.0985 -0.8687 34 1 4.0910 -5.0326 1.9294 35 1 8.4888 -5.4574 2.8484 36 1 2.1985 -7.5174 -0.3299 37 1 4.0140 -7.4305 2.2259 38 1 2.7487 -8.7149 1.8375 39 1 3.9992 -9.3034 -0.2902 40 1 5.2646 -8.0189 0.0983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752457490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:36 Heat of formation + Delta-G solvation = 44.116212 kcal Electronic energy + Delta-G solvation = -21637.728327 eV Core-core repulsion = 18454.315759 eV Total energy + Delta-G solvation = -3183.412568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27682 -39.01219 -37.70234 -34.72173 -33.41991 -32.44318 -31.29289 -29.92795 -28.46780 -26.72884 -23.87221 -22.83598 -21.85929 -21.43929 -20.44751 -19.63950 -18.98440 -18.53737 -17.55838 -15.79477 -15.63829 -15.42802 -14.98366 -14.74144 -14.10466 -13.98908 -13.64353 -13.48070 -13.25775 -12.85053 -12.83314 -12.60519 -12.51693 -12.22320 -11.63158 -11.55392 -11.27115 -11.05405 -10.87979 -10.63957 -10.32250 -9.84853 -9.66312 -9.57348 -9.27657 -9.11312 -8.88945 -8.77565 -8.10593 -7.47340 -5.92949 -3.30184 1.55198 2.74396 3.14771 3.23367 3.28539 3.34408 3.40290 3.53271 4.42999 4.47816 5.00680 5.01984 5.14109 5.19340 5.25246 5.33185 5.36314 5.61919 5.69729 5.75227 5.80481 5.88950 5.89859 5.91169 5.97482 6.13985 6.21869 6.32850 6.39196 6.51232 6.55735 6.68456 6.78018 6.95477 6.98154 7.08325 7.39270 7.75692 7.83221 8.25342 8.37844 9.02863 9.75006 9.94464 11.24495 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.005704 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.773390 B = 4907.433512 C = 6061.254506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.081 4.081 3 C -0.216 4.216 4 C 0.024 3.976 5 N -0.537 5.537 6 H 0.420 0.580 7 C -0.056 4.056 8 C 0.584 3.416 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.118 3.882 12 C 0.197 3.803 13 H 0.066 0.934 14 N -0.744 5.744 15 C -0.246 4.246 16 H 0.094 0.906 17 C 0.011 3.989 18 N -0.928 5.928 19 Si 0.877 3.123 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.178 4.178 24 C -0.165 4.165 25 C -0.170 4.170 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.403 0.597 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 8.574 -5.055 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.240 4.240 4 C -0.112 4.112 5 N -0.133 5.133 6 H 0.258 0.742 7 C -0.169 4.169 8 C 0.372 3.628 9 O -0.416 6.416 10 N -0.370 5.370 11 C -0.007 4.007 12 C 0.087 3.913 13 H 0.084 0.916 14 N -0.387 5.387 15 C -0.376 4.376 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.575 5.575 19 Si 0.707 3.293 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.205 1.205 23 C -0.200 4.200 24 C -0.202 4.202 25 C -0.207 4.207 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.158 0.842 30 H 0.187 0.813 31 H 0.238 0.762 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.253 8.141 -5.124 14.059 hybrid contribution 0.653 0.374 1.297 1.499 sum -9.600 8.514 -3.827 13.391 Atomic orbital electron populations 1.20309 0.89476 1.02636 1.02024 1.19916 0.95784 0.90800 1.02483 1.20757 0.91857 0.98634 1.12784 1.22001 0.99519 0.83081 1.06627 1.42063 1.07484 1.07384 1.56369 0.74165 1.20319 0.83752 0.93742 1.19049 1.17070 0.85911 0.83099 0.76716 1.90772 1.16067 1.83427 1.51330 1.45908 1.09940 1.06458 1.74646 1.21653 0.97478 0.79502 1.02024 1.19975 0.89179 0.89566 0.92571 0.91647 1.42866 1.05990 1.72633 1.17206 1.19015 0.81803 1.33634 1.03104 0.88870 1.24639 0.95250 1.00919 0.97718 1.69683 1.03225 1.52328 1.32242 0.86693 0.78025 0.79801 0.84754 1.20953 1.21822 1.20461 1.22990 0.98977 0.95237 1.02773 1.22844 1.02734 1.02353 0.92290 1.22902 0.98768 0.97452 1.01537 0.91771 0.92278 0.90202 0.84173 0.81305 0.76195 0.91507 0.91169 0.80376 0.92940 0.89239 0.87273 0.91008 0.90798 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.83 36.01 0.35 -0.76 16 2 C -0.08 -1.14 6.21 -104.16 -0.65 -1.79 16 3 C -0.22 -2.54 10.76 -39.98 -0.43 -2.97 16 4 C 0.02 0.26 11.89 -16.92 -0.20 0.06 16 5 N -0.54 -6.63 5.99 -9.39 -0.06 -6.68 16 6 H 0.42 4.59 8.19 -40.82 -0.33 4.25 16 7 C -0.06 -0.83 7.06 -81.98 -0.58 -1.41 16 8 C 0.58 9.73 7.79 -12.85 -0.10 9.63 16 9 O -0.54 -10.12 14.81 5.20 0.08 -10.05 16 10 N -0.72 -11.26 5.38 -61.61 -0.33 -11.59 16 11 C 0.12 1.85 5.21 -4.04 -0.02 1.83 16 12 C 0.20 3.38 2.86 -67.93 -0.19 3.18 16 13 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 14 N -0.74 -15.17 2.88 -53.42 -0.15 -15.33 16 15 C -0.25 -6.04 8.64 -15.06 -0.13 -6.17 16 16 H 0.09 2.49 7.14 -52.48 -0.37 2.12 16 17 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 18 N -0.93 -27.03 13.97 55.49 0.78 -26.26 16 19 Si 0.88 20.68 27.74 -169.99 -4.71 15.97 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 23 C -0.18 -2.92 5.70 -90.62 -0.52 -3.44 16 24 C -0.17 -2.92 9.74 -26.69 -0.26 -3.18 16 25 C -0.17 -2.96 9.87 -26.69 -0.26 -3.22 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.14 6.49 -51.93 -0.34 0.81 16 29 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.40 6.13 7.27 -40.82 -0.30 5.84 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.36 7.66 5.66 -40.82 -0.23 7.43 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 37 H 0.11 2.26 6.68 -51.93 -0.35 1.91 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.11 2.21 6.22 -51.93 -0.32 1.89 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -30.00 329.68 -8.16 -38.15 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -5.64 Total: 18.86 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.08 Total: -8.04 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.23 Total: -59.86 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.00 -8.16 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752457490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.268 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds