Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39840 * 126.45922 * 2 1 4 4 C 1.35453 * 107.86371 * 180.26478 * 3 2 1 5 5 N 1.35533 * 108.87437 * 359.73567 * 4 3 2 6 6 H 0.96996 * 125.67953 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64310 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23300 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00226 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99963 * 0.02954 * 8 7 5 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47369 * 64.99599 * 12 11 10 14 14 N 1.46501 * 109.46932 * 304.99709 * 12 11 10 15 15 C 1.36940 * 119.99958 * 154.99652 * 14 12 11 16 16 H 1.08000 * 119.99617 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99883 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99665 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47348 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46936 * 120.00326 * 19 17 15 22 22 H 1.48504 * 109.47301 * 240.00189 * 19 17 15 23 23 C 1.52999 * 109.46954 * 184.99888 * 12 11 10 24 24 C 1.53001 * 117.49597 * 248.74464 * 23 12 11 25 25 C 1.53001 * 117.49395 * 180.08482 * 23 12 11 26 26 H 1.08997 * 109.47370 * 270.18585 * 1 2 3 27 27 H 1.09003 * 109.47394 * 30.19034 * 1 2 3 28 28 H 1.09005 * 109.47098 * 150.18748 * 1 2 3 29 29 H 1.07999 * 126.06726 * 359.97438 * 3 2 1 30 30 H 1.08004 * 125.56100 * 179.71904 * 4 3 2 31 31 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 33 33 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 34 34 H 0.96998 * 120.00221 * 335.00050 * 14 12 11 35 35 H 0.96996 * 120.00088 * 179.97438 * 18 17 15 36 36 H 1.08995 * 115.55198 * 34.41570 * 23 12 11 37 37 H 1.08998 * 117.49706 * 359.97438 * 24 23 12 38 38 H 1.08998 * 117.50025 * 145.02616 * 24 23 12 39 39 H 1.09002 * 117.49660 * 214.97547 * 25 23 12 40 40 H 1.09001 * 117.50481 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6284 -0.6625 -0.0038 6 1 4.4190 -1.2244 -0.0066 7 6 2.3263 -1.1089 0.0031 8 6 1.8899 -2.5092 0.0069 9 8 0.7027 -2.7766 0.0126 10 7 2.8037 -3.4999 0.0043 11 6 2.3677 -4.8986 0.0075 12 6 3.5932 -5.8147 0.0028 13 1 4.1485 -5.6835 0.9316 14 7 4.4535 -5.4736 -1.1328 15 6 5.7926 -5.7561 -1.0865 16 1 6.2144 -6.2307 -0.2128 17 6 6.6077 -5.4334 -2.1628 18 7 6.0936 -4.8555 -3.2277 19 14 8.4343 -5.8195 -2.0997 20 1 8.7593 -6.4652 -0.8026 21 1 8.7844 -6.7395 -3.2116 22 1 9.2112 -4.5611 -2.2352 23 6 3.1406 -7.2711 -0.1195 24 6 3.3407 -8.1775 1.0968 25 6 4.2264 -8.3488 -0.1400 26 1 -0.3634 0.0033 1.0276 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 2.0137 2.1549 -0.0004 30 1 4.4972 1.3252 -0.0118 31 1 3.7500 -3.2868 -0.0006 32 1 1.7727 -5.0916 0.9002 33 1 1.7654 -5.0935 -0.8798 34 1 4.0746 -5.0477 -1.9176 35 1 6.6632 -4.6297 -3.9796 36 1 2.2541 -7.4381 -0.7312 37 1 3.7952 -7.7364 1.9838 38 1 2.5861 -8.9412 1.2849 39 1 4.0540 -9.2251 -0.7649 40 1 5.2632 -8.0203 -0.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752457491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = 36.630221 kcal Electronic energy + Delta-G solvation = -21416.236230 eV Core-core repulsion = 18232.499045 eV Total energy + Delta-G solvation = -3183.737185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16756 -38.85913 -37.49746 -34.75004 -33.51866 -32.34177 -31.09130 -29.68643 -28.02493 -26.58785 -23.93887 -22.81559 -21.76404 -21.49819 -20.34871 -19.87180 -18.91864 -18.39708 -17.26087 -15.64317 -15.45741 -15.32960 -14.98536 -14.48535 -14.14871 -13.78463 -13.55517 -13.47554 -13.20842 -13.09501 -12.70493 -12.51711 -12.13044 -12.09398 -11.46759 -11.41944 -11.22559 -10.95622 -10.91921 -10.77727 -10.16972 -10.00768 -9.77222 -9.52694 -9.35420 -9.07304 -8.74800 -8.67695 -7.99746 -7.13707 -5.90432 -3.20481 1.66579 2.83956 3.25730 3.31667 3.38578 3.40931 3.52638 3.66217 4.35468 4.52409 5.09832 5.13869 5.17148 5.29675 5.39344 5.44708 5.46641 5.54771 5.70759 5.83405 5.84916 5.94008 5.97894 6.02386 6.06194 6.13078 6.23115 6.33612 6.47461 6.51282 6.55794 6.71880 6.79252 6.88778 6.93049 7.08285 7.50141 7.57140 7.89918 8.26188 8.51182 9.38521 9.92725 10.29016 11.31155 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005337 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.433838 B = 5244.882904 C = 6746.103909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.083 4.083 3 C -0.216 4.216 4 C 0.022 3.978 5 N -0.535 5.535 6 H 0.421 0.579 7 C -0.052 4.052 8 C 0.585 3.415 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.192 3.808 13 H 0.055 0.945 14 N -0.717 5.717 15 C -0.239 4.239 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.403 0.597 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 6.601 8.030 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.241 4.241 4 C -0.114 4.114 5 N -0.131 5.131 6 H 0.259 0.741 7 C -0.165 4.165 8 C 0.372 3.628 9 O -0.419 6.419 10 N -0.365 5.365 11 C -0.004 4.004 12 C 0.082 3.918 13 H 0.073 0.927 14 N -0.358 5.358 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.576 5.576 19 Si 0.734 3.266 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.220 1.220 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.186 0.814 31 H 0.239 0.761 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.158 6.203 8.062 11.891 hybrid contribution 1.962 -0.327 -0.497 2.050 sum -4.195 5.876 7.566 10.458 Atomic orbital electron populations 1.20300 0.89547 1.02690 1.01860 1.19898 0.95745 0.90815 1.02746 1.20738 0.91881 0.98577 1.12888 1.21973 0.99447 0.83139 1.06842 1.42052 1.07516 1.07322 1.56168 0.74117 1.20326 0.83726 0.93756 1.18707 1.17057 0.85902 0.83104 0.76733 1.90765 1.16123 1.83443 1.51551 1.45858 1.09955 1.06332 1.74333 1.21611 0.97371 0.79618 1.01780 1.20069 0.89673 0.89184 0.92905 0.92747 1.42480 1.04968 1.71798 1.16598 1.19214 0.83897 1.33149 1.00695 0.91056 1.24731 0.97940 1.01468 0.96447 1.69671 1.34560 1.46923 1.06421 0.86198 0.85603 0.77515 0.77317 1.20565 1.21834 1.21951 1.23015 1.00351 0.94565 1.00161 1.22964 1.03937 1.03560 0.92896 1.22783 0.97803 0.99633 0.99097 0.91882 0.92341 0.90174 0.84273 0.81424 0.76117 0.91432 0.91596 0.78055 0.93472 0.89057 0.89563 0.90024 0.90188 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.83 36.00 0.35 -0.81 16 2 C -0.08 -1.23 6.21 -104.16 -0.65 -1.88 16 3 C -0.22 -2.68 10.76 -39.98 -0.43 -3.11 16 4 C 0.02 0.26 11.89 -16.91 -0.20 0.06 16 5 N -0.54 -6.98 5.99 -9.39 -0.06 -7.04 16 6 H 0.42 4.94 8.19 -40.82 -0.33 4.61 16 7 C -0.05 -0.82 7.06 -81.98 -0.58 -1.39 16 8 C 0.58 10.25 7.79 -12.85 -0.10 10.15 16 9 O -0.54 -10.66 14.80 5.19 0.08 -10.58 16 10 N -0.71 -11.90 5.38 -61.61 -0.33 -12.23 16 11 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 12 C 0.19 3.48 2.70 -67.93 -0.18 3.29 16 13 H 0.05 0.99 7.84 -51.93 -0.41 0.59 16 14 N -0.72 -15.91 4.54 -53.42 -0.24 -16.15 16 15 C -0.24 -5.88 8.63 -15.06 -0.13 -6.01 16 16 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 19 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 C -0.16 -2.72 5.36 -90.62 -0.49 -3.20 16 24 C -0.20 -2.91 10.18 -26.69 -0.27 -3.18 16 25 C -0.16 -2.71 9.78 -26.69 -0.26 -2.97 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.23 6.49 -51.93 -0.34 0.89 16 29 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 31 H 0.40 6.60 7.27 -40.82 -0.30 6.31 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.39 9.47 7.80 -40.82 -0.32 9.15 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 37 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.10 2.03 6.23 -51.93 -0.32 1.71 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -29.49 335.70 -8.58 -38.07 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -5.74 Total: 19.76 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -3.05 Total: -7.41 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.09 Total: -60.87 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.49 -8.58 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752457491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.704 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds