Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39840 * 126.45922 * 2 1 4 4 C 1.35453 * 107.86371 * 180.26478 * 3 2 1 5 5 N 1.35533 * 108.87437 * 359.73567 * 4 3 2 6 6 H 0.96996 * 125.67953 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64310 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23300 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00226 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99963 * 0.02954 * 8 7 5 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47369 * 64.99599 * 12 11 10 14 14 N 1.46501 * 109.46932 * 304.99709 * 12 11 10 15 15 C 1.36940 * 119.99958 * 154.99652 * 14 12 11 16 16 H 1.08000 * 119.99617 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99883 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99665 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47348 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46936 * 120.00326 * 19 17 15 22 22 H 1.48504 * 109.47301 * 240.00189 * 19 17 15 23 23 C 1.52999 * 109.46954 * 184.99888 * 12 11 10 24 24 C 1.53001 * 117.49597 * 248.74464 * 23 12 11 25 25 C 1.53001 * 117.49395 * 180.08482 * 23 12 11 26 26 H 1.08997 * 109.47370 * 270.18585 * 1 2 3 27 27 H 1.09003 * 109.47394 * 30.19034 * 1 2 3 28 28 H 1.09005 * 109.47098 * 150.18748 * 1 2 3 29 29 H 1.07999 * 126.06726 * 359.97438 * 3 2 1 30 30 H 1.08004 * 125.56100 * 179.71904 * 4 3 2 31 31 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 33 33 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 34 34 H 0.96998 * 120.00221 * 335.00050 * 14 12 11 35 35 H 0.96996 * 120.00088 * 179.97438 * 18 17 15 36 36 H 1.08995 * 115.55198 * 34.41570 * 23 12 11 37 37 H 1.08998 * 117.49706 * 359.97438 * 24 23 12 38 38 H 1.08998 * 117.50025 * 145.02616 * 24 23 12 39 39 H 1.09002 * 117.49660 * 214.97547 * 25 23 12 40 40 H 1.09001 * 117.50481 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6284 -0.6625 -0.0038 6 1 4.4190 -1.2244 -0.0066 7 6 2.3263 -1.1089 0.0031 8 6 1.8899 -2.5092 0.0069 9 8 0.7027 -2.7766 0.0126 10 7 2.8037 -3.4999 0.0043 11 6 2.3677 -4.8986 0.0075 12 6 3.5932 -5.8147 0.0028 13 1 4.1485 -5.6835 0.9316 14 7 4.4535 -5.4736 -1.1328 15 6 5.7926 -5.7561 -1.0865 16 1 6.2144 -6.2307 -0.2128 17 6 6.6077 -5.4334 -2.1628 18 7 6.0936 -4.8555 -3.2277 19 14 8.4343 -5.8195 -2.0997 20 1 8.7593 -6.4652 -0.8026 21 1 8.7844 -6.7395 -3.2116 22 1 9.2112 -4.5611 -2.2352 23 6 3.1406 -7.2711 -0.1195 24 6 3.3407 -8.1775 1.0968 25 6 4.2264 -8.3488 -0.1400 26 1 -0.3634 0.0033 1.0276 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 2.0137 2.1549 -0.0004 30 1 4.4972 1.3252 -0.0118 31 1 3.7500 -3.2868 -0.0006 32 1 1.7727 -5.0916 0.9002 33 1 1.7654 -5.0935 -0.8798 34 1 4.0746 -5.0477 -1.9176 35 1 6.6632 -4.6297 -3.9796 36 1 2.2541 -7.4381 -0.7312 37 1 3.7952 -7.7364 1.9838 38 1 2.5861 -8.9412 1.2849 39 1 4.0540 -9.2251 -0.7649 40 1 5.2632 -8.0203 -0.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752457491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = 17.701417 kcal Electronic energy + Delta-G solvation = -21417.057045 eV Core-core repulsion = 18232.499045 eV Total energy + Delta-G solvation = -3184.557999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23153 -40.20489 -38.93326 -36.16545 -35.23488 -33.46180 -32.74030 -30.91511 -29.48199 -27.73553 -25.66807 -24.28531 -23.04610 -22.72503 -21.50305 -21.21777 -20.20096 -19.55813 -19.04834 -17.00419 -16.88643 -16.70151 -16.38032 -15.97536 -15.58445 -15.20338 -14.93151 -14.80019 -14.51524 -14.44757 -13.79142 -13.65333 -13.55308 -13.15155 -13.01087 -12.92933 -12.71920 -12.51840 -12.40612 -12.27483 -11.97234 -11.75141 -11.14009 -11.03096 -10.87554 -10.76857 -10.14017 -9.67240 -9.07786 -9.02717 -7.90970 -5.19061 0.50983 1.46544 1.50116 1.57097 1.86613 2.15859 2.31193 2.39234 2.55778 3.06560 3.46037 3.76035 3.94138 3.97413 4.15702 4.27290 4.28863 4.33138 4.37525 4.40914 4.56198 4.65678 4.83566 4.89357 4.90117 4.92677 5.03245 5.12274 5.14764 5.20647 5.39152 5.42220 5.46976 5.51665 5.60295 5.81888 6.03525 6.28227 6.49659 6.62636 7.16975 7.36706 8.06943 8.33104 9.31765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005337 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.433838 B = 5244.882904 C = 6746.103909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.094 4.094 3 C -0.226 4.226 4 C 0.041 3.959 5 N -0.534 5.534 6 H 0.425 0.575 7 C -0.092 4.092 8 C 0.581 3.419 9 O -0.571 6.571 10 N -0.711 5.711 11 C 0.129 3.871 12 C 0.197 3.803 13 H 0.059 0.941 14 N -0.723 5.723 15 C -0.217 4.217 16 H 0.078 0.922 17 C -0.068 4.068 18 N -0.967 5.967 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.304 1.304 22 H -0.296 1.296 23 C -0.174 4.174 24 C -0.162 4.162 25 C -0.173 4.173 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.166 0.834 30 H 0.209 0.791 31 H 0.405 0.595 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.372 0.628 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 7.254 9.639 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.250 4.250 4 C -0.096 4.096 5 N -0.130 5.130 6 H 0.263 0.737 7 C -0.204 4.204 8 C 0.370 3.630 9 O -0.452 6.452 10 N -0.362 5.362 11 C 0.005 3.995 12 C 0.089 3.911 13 H 0.076 0.924 14 N -0.362 5.362 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.261 4.261 18 N -0.618 5.618 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.232 1.232 22 H -0.224 1.224 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.183 0.817 30 H 0.226 0.774 31 H 0.240 0.760 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.738 6.825 9.730 13.197 hybrid contribution 1.779 -0.495 -0.925 2.065 sum -3.959 6.329 8.805 11.544 Atomic orbital electron populations 1.20288 0.89219 1.02514 1.02174 1.20297 0.96446 0.91554 1.02042 1.21098 0.91827 0.99171 1.12903 1.22717 1.00697 0.82544 1.03645 1.42102 1.06763 1.08163 1.55985 0.73657 1.20180 0.85242 0.92978 1.22007 1.17373 0.85530 0.84034 0.76031 1.90735 1.17216 1.84093 1.53182 1.45813 1.09918 1.06201 1.74235 1.21501 0.96691 0.79615 1.01717 1.20151 0.89461 0.90190 0.91347 0.92352 1.42575 1.04761 1.71744 1.17154 1.19493 0.84850 1.30470 1.00090 0.90430 1.25348 1.01273 1.02804 0.96660 1.69816 1.35407 1.49410 1.07138 0.85278 0.81759 0.76731 0.77201 1.19128 1.23165 1.22370 1.22916 1.00459 0.93665 1.02532 1.23036 1.02723 1.02340 0.91812 1.22738 0.96721 0.99972 1.01601 0.91310 0.90068 0.92685 0.81670 0.77433 0.75981 0.90071 0.93024 0.79624 0.94387 0.88863 0.88564 0.87526 0.89598 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 9.83 71.23 0.70 -1.55 16 2 C -0.09 -2.70 6.21 -19.56 -0.12 -2.82 16 3 C -0.23 -5.04 10.76 22.01 0.24 -4.81 16 4 C 0.04 0.82 11.89 83.48 0.99 1.81 16 5 N -0.53 -13.30 5.99 -183.62 -1.10 -14.40 16 6 H 0.42 9.60 8.19 -92.71 -0.76 8.84 16 7 C -0.09 -2.86 7.06 40.35 0.28 -2.58 16 8 C 0.58 20.77 7.79 86.45 0.67 21.44 16 9 O -0.57 -23.19 14.80 -4.33 -0.06 -23.25 16 10 N -0.71 -23.97 5.38 -467.06 -2.51 -26.48 16 11 C 0.13 4.34 5.22 86.38 0.45 4.80 16 12 C 0.20 7.01 2.70 44.99 0.12 7.13 16 13 H 0.06 2.05 7.84 -2.39 -0.02 2.03 16 14 N -0.72 -32.17 4.54 -322.93 -1.47 -33.64 16 15 C -0.22 -10.66 8.63 84.03 0.73 -9.93 16 16 H 0.08 3.68 6.91 -2.91 -0.02 3.66 16 17 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 18 N -0.97 -55.58 13.06 21.65 0.28 -55.30 16 19 Si 0.96 43.37 29.55 68.60 2.03 45.40 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 22 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 23 C -0.17 -5.73 5.36 -10.79 -0.06 -5.79 16 24 C -0.16 -4.34 10.18 30.62 0.31 -4.03 16 25 C -0.17 -5.78 9.78 30.62 0.30 -5.48 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.73 6.49 -2.38 -0.02 1.72 16 29 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.40 13.35 7.27 -92.71 -0.67 12.68 16 32 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.37 18.64 7.80 -92.71 -0.72 17.92 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 37 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.08 3.10 6.23 -2.39 -0.01 3.09 16 Total: -1.00 -64.13 335.70 1.17 -62.96 By element: Atomic # 1 Polarization: 50.73 SS G_CDS: -1.08 Total: 49.65 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.08 Total: -4.95 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -4.80 Total: -129.81 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.13 1.17 -62.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752457491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.664 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds