Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38626 * 120.75574 * 2 1 4 4 C 1.38559 * 119.35595 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.55166 * 180.02562 * 4 3 2 6 6 N 1.31526 * 120.90019 * 359.74029 * 4 3 2 7 7 C 1.32727 * 121.64075 * 0.52766 * 6 4 3 8 8 C 1.48165 * 119.71803 * 179.75076 * 7 6 4 9 9 O 1.21518 * 119.99383 * 179.72608 * 8 7 6 10 10 N 1.34772 * 120.00563 * 359.72883 * 8 7 6 11 11 C 1.46501 * 120.00231 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47156 * 180.02562 * 11 10 8 13 13 N 1.46501 * 109.47156 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00142 * 89.99814 * 13 12 11 15 15 C 1.36936 * 119.99842 * 269.99801 * 13 12 11 16 16 H 1.08004 * 120.00054 * 23.04294 * 15 13 12 17 17 C 1.38818 * 120.00029 * 203.04445 * 15 13 12 18 18 N 1.31621 * 119.99724 * 12.94089 * 17 15 13 19 19 Si 1.86801 * 120.00001 * 192.93655 * 17 15 13 20 20 H 1.48496 * 109.47092 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46690 * 120.00097 * 19 17 15 22 22 H 1.48494 * 109.47122 * 240.00196 * 19 17 15 23 23 C 1.38590 * 120.75467 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46973 * 269.97457 * 1 2 3 25 25 H 1.08993 * 109.47380 * 29.97938 * 1 2 3 26 26 H 1.09004 * 109.46865 * 149.98054 * 1 2 3 27 27 H 1.07996 * 120.32368 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47385 * 89.99405 * 5 4 3 29 29 H 1.09003 * 109.47260 * 210.00078 * 5 4 3 30 30 H 1.09002 * 109.47517 * 329.99839 * 5 4 3 31 31 H 0.97001 * 120.00051 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47077 * 299.99471 * 11 10 8 33 33 H 1.08994 * 109.47072 * 59.99535 * 11 10 8 34 34 H 1.09005 * 109.47333 * 299.99645 * 12 11 10 35 35 H 1.08994 * 109.47512 * 59.99802 * 12 11 10 36 36 H 1.09006 * 109.47126 * 95.12234 * 14 13 12 37 37 H 1.09003 * 109.47099 * 215.11884 * 14 13 12 38 38 H 1.08997 * 109.47204 * 335.12497 * 14 13 12 39 39 H 0.97000 * 119.99559 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.47508 * 359.95127 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0127 0.0041 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.7993 -3.4812 -0.0007 10 7 5.7280 -2.3807 -0.0016 11 6 6.4917 -3.6309 -0.0011 12 6 7.9885 -3.3141 -0.0011 13 7 8.7522 -4.5643 0.0000 14 6 9.1343 -5.1904 -1.2681 15 6 9.1090 -5.1476 1.1865 16 1 8.5486 -4.9320 2.0842 17 6 10.1910 -6.0159 1.2353 18 7 11.0249 -6.0860 0.2194 19 14 10.4634 -7.0848 2.7429 20 1 9.3931 -6.8198 3.7375 21 1 10.4281 -8.5159 2.3478 22 1 11.7852 -6.7689 3.3413 23 6 2.2157 -1.1910 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6936 2.1366 -0.0004 28 1 4.5633 2.7608 1.0278 29 1 5.3260 2.3040 -0.5143 30 1 3.7996 3.2195 -0.5131 31 1 6.1920 -1.5289 -0.0022 32 1 6.2430 -4.2082 0.8894 33 1 6.2423 -4.2093 -0.8905 34 1 8.2377 -2.7365 -0.8913 35 1 8.2376 -2.7359 0.8886 36 1 10.1440 -4.8798 -1.5370 37 1 9.1040 -6.2748 -1.1616 38 1 8.4393 -4.8824 -2.0493 39 1 11.7807 -6.6930 0.2534 40 1 1.6959 -2.1376 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753055240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = 11.990549 kcal Electronic energy + Delta-G solvation = -20614.851146 eV Core-core repulsion = 17430.045505 eV Total energy + Delta-G solvation = -3184.805641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81189 -38.92483 -36.04549 -34.63882 -34.01003 -32.96614 -31.24819 -28.36348 -28.26485 -27.67663 -25.84559 -24.76053 -22.79426 -21.49474 -20.61426 -20.17316 -17.70615 -16.76867 -16.63788 -16.14322 -15.48254 -15.41213 -14.68534 -14.60244 -14.34318 -13.68625 -13.65165 -13.59698 -13.25278 -13.08887 -12.88724 -12.58726 -12.49285 -12.32263 -12.19663 -11.93497 -11.15010 -10.86814 -10.84624 -10.57192 -10.33237 -10.22572 -9.90630 -9.88610 -9.79166 -9.60093 -9.21028 -8.65609 -8.53997 -6.76844 -5.71610 -3.19541 0.50786 0.95003 2.76744 3.27814 3.40228 3.47445 3.50299 3.73994 3.93152 4.26649 4.48159 4.57830 4.70845 4.81443 5.02576 5.15203 5.16824 5.29221 5.32853 5.41054 5.42347 5.51012 5.67003 5.73098 5.80829 5.85875 5.93603 5.99615 6.29606 6.38975 6.62223 6.68684 6.79373 6.91977 7.39289 7.52271 7.74075 7.83108 7.85488 8.37759 8.42592 9.24000 9.86350 10.34680 11.33287 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.003130 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.165312 B = 8942.987766 C = 9248.475660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.158 4.158 4 C 0.129 3.871 5 C -0.104 4.104 6 N -0.463 5.463 7 C 0.096 3.904 8 C 0.563 3.437 9 O -0.538 6.538 10 N -0.700 5.700 11 C 0.092 3.908 12 C 0.144 3.856 13 N -0.597 5.597 14 C 0.161 3.839 15 C -0.258 4.258 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C -0.123 4.123 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.407 0.593 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.042 0.958 38 H -0.001 1.001 39 H 0.252 0.748 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 17.667 -1.971 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.178 4.178 4 C -0.011 4.011 5 C -0.161 4.161 6 N -0.176 5.176 7 C -0.043 4.043 8 C 0.346 3.654 9 O -0.415 6.415 10 N -0.350 5.350 11 C -0.033 4.033 12 C 0.015 3.985 13 N -0.320 5.320 14 C 0.016 3.984 15 C -0.388 4.388 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.551 5.551 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.144 4.144 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.243 0.757 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.752 16.711 -1.998 24.461 hybrid contribution -0.490 -0.276 0.783 0.964 sum -18.242 16.434 -1.215 24.583 Atomic orbital electron populations 1.20833 0.89711 1.03564 1.03128 1.20342 0.97081 0.92546 0.95528 1.22031 0.94790 0.98806 1.02146 1.21304 0.91185 0.93825 0.94780 1.20734 1.00506 0.91512 1.03369 1.67412 1.41059 0.97579 1.11590 1.21280 0.91733 0.92157 0.99092 1.17881 0.82774 0.87114 0.77619 1.90784 1.70058 1.29995 1.50627 1.45950 1.05490 1.11439 1.72138 1.22512 0.94045 0.84567 1.02214 1.20836 0.88246 0.89608 0.99795 1.43797 1.62118 1.22452 1.03643 1.20843 0.96207 0.97175 0.84170 1.19252 1.08907 1.22826 0.87775 0.91259 1.25034 0.95625 1.01234 0.97665 1.70087 1.14795 1.39186 1.31064 0.86166 0.77600 0.80336 0.82350 1.20240 1.21558 1.21703 1.22016 0.93912 0.99548 0.98903 0.90292 0.90871 0.90673 0.84482 0.90167 0.90047 0.90642 0.75724 0.91311 0.91984 0.93962 0.92817 0.94847 0.93934 0.98232 0.93768 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.06 36.00 0.36 -0.33 16 2 C -0.05 -0.44 5.91 -104.35 -0.62 -1.05 16 3 C -0.16 -1.34 9.45 -39.32 -0.37 -1.71 16 4 C 0.13 1.30 6.78 -82.61 -0.56 0.74 16 5 C -0.10 -0.71 10.17 36.00 0.37 -0.35 16 6 N -0.46 -6.00 9.45 -6.06 -0.06 -6.06 16 7 C 0.10 1.37 6.75 -83.00 -0.56 0.81 16 8 C 0.56 9.65 7.81 -12.19 -0.10 9.55 16 9 O -0.54 -10.81 16.32 5.35 0.09 -10.72 16 10 N -0.70 -11.62 5.54 -61.15 -0.34 -11.96 16 11 C 0.09 1.79 6.00 -4.04 -0.02 1.76 16 12 C 0.14 2.97 5.76 -4.04 -0.02 2.95 16 13 N -0.60 -15.33 2.92 -181.12 -0.53 -15.86 16 14 C 0.16 4.04 8.98 59.85 0.54 4.58 16 15 C -0.26 -7.23 9.65 -15.06 -0.15 -7.37 16 16 H 0.07 1.91 7.86 -52.48 -0.41 1.49 16 17 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 18 N -0.91 -26.76 10.71 55.49 0.59 -26.17 16 19 Si 0.91 22.23 29.57 -169.99 -5.03 17.20 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.12 -1.49 9.34 -39.05 -0.36 -1.85 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 26 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.41 5.98 7.80 -40.82 -0.32 5.66 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.04 0.80 8.07 -51.93 -0.42 0.39 16 35 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 36 H 0.03 0.90 7.34 -51.93 -0.38 0.51 16 37 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 38 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.15 1.75 7.64 -52.49 -0.40 1.34 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -33.11 341.09 -7.80 -40.91 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.08 Total: -0.20 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.59 Total: 7.72 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.33 Total: -60.05 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.11 -7.80 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753055240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.897 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds