Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38626 * 120.75574 * 2 1 4 4 C 1.38559 * 119.35595 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.55166 * 180.02562 * 4 3 2 6 6 N 1.31526 * 120.90019 * 359.74029 * 4 3 2 7 7 C 1.32727 * 121.64075 * 0.52766 * 6 4 3 8 8 C 1.48165 * 119.71803 * 179.75076 * 7 6 4 9 9 O 1.21518 * 119.99383 * 179.72608 * 8 7 6 10 10 N 1.34772 * 120.00563 * 359.72883 * 8 7 6 11 11 C 1.46501 * 120.00231 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47156 * 180.02562 * 11 10 8 13 13 N 1.46501 * 109.47156 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00142 * 89.99814 * 13 12 11 15 15 C 1.36936 * 119.99842 * 269.99801 * 13 12 11 16 16 H 1.08004 * 120.00054 * 23.04294 * 15 13 12 17 17 C 1.38818 * 120.00029 * 203.04445 * 15 13 12 18 18 N 1.31621 * 119.99724 * 12.94089 * 17 15 13 19 19 Si 1.86801 * 120.00001 * 192.93655 * 17 15 13 20 20 H 1.48496 * 109.47092 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46690 * 120.00097 * 19 17 15 22 22 H 1.48494 * 109.47122 * 240.00196 * 19 17 15 23 23 C 1.38590 * 120.75467 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46973 * 269.97457 * 1 2 3 25 25 H 1.08993 * 109.47380 * 29.97938 * 1 2 3 26 26 H 1.09004 * 109.46865 * 149.98054 * 1 2 3 27 27 H 1.07996 * 120.32368 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47385 * 89.99405 * 5 4 3 29 29 H 1.09003 * 109.47260 * 210.00078 * 5 4 3 30 30 H 1.09002 * 109.47517 * 329.99839 * 5 4 3 31 31 H 0.97001 * 120.00051 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47077 * 299.99471 * 11 10 8 33 33 H 1.08994 * 109.47072 * 59.99535 * 11 10 8 34 34 H 1.09005 * 109.47333 * 299.99645 * 12 11 10 35 35 H 1.08994 * 109.47512 * 59.99802 * 12 11 10 36 36 H 1.09006 * 109.47126 * 95.12234 * 14 13 12 37 37 H 1.09003 * 109.47099 * 215.11884 * 14 13 12 38 38 H 1.08997 * 109.47204 * 335.12497 * 14 13 12 39 39 H 0.97000 * 119.99559 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.47508 * 359.95127 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0127 0.0041 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.7993 -3.4812 -0.0007 10 7 5.7280 -2.3807 -0.0016 11 6 6.4917 -3.6309 -0.0011 12 6 7.9885 -3.3141 -0.0011 13 7 8.7522 -4.5643 0.0000 14 6 9.1343 -5.1904 -1.2681 15 6 9.1090 -5.1476 1.1865 16 1 8.5486 -4.9320 2.0842 17 6 10.1910 -6.0159 1.2353 18 7 11.0249 -6.0860 0.2194 19 14 10.4634 -7.0848 2.7429 20 1 9.3931 -6.8198 3.7375 21 1 10.4281 -8.5159 2.3478 22 1 11.7852 -6.7689 3.3413 23 6 2.2157 -1.1910 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6936 2.1366 -0.0004 28 1 4.5633 2.7608 1.0278 29 1 5.3260 2.3040 -0.5143 30 1 3.7996 3.2195 -0.5131 31 1 6.1920 -1.5289 -0.0022 32 1 6.2430 -4.2082 0.8894 33 1 6.2423 -4.2093 -0.8905 34 1 8.2377 -2.7365 -0.8913 35 1 8.2376 -2.7359 0.8886 36 1 10.1440 -4.8798 -1.5370 37 1 9.1040 -6.2748 -1.1616 38 1 8.4393 -4.8824 -2.0493 39 1 11.7807 -6.6930 0.2534 40 1 1.6959 -2.1376 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753055240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -10.163647 kcal Electronic energy + Delta-G solvation = -20615.811824 eV Core-core repulsion = 17430.045505 eV Total energy + Delta-G solvation = -3185.766319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76125 -40.18993 -37.89555 -35.90080 -35.11888 -33.86770 -33.19065 -29.96560 -29.00832 -28.32141 -27.94053 -26.09735 -24.35418 -22.43402 -22.22978 -21.45178 -18.98982 -18.59188 -17.74545 -17.05919 -16.93048 -16.71815 -16.45352 -15.76681 -15.50024 -15.29183 -15.03065 -14.64748 -14.31810 -14.19727 -14.12314 -13.74911 -13.41030 -13.11625 -13.06621 -13.00484 -12.81518 -12.72338 -12.59031 -12.51466 -12.18270 -11.99519 -11.81967 -11.48283 -10.70687 -10.58536 -10.52121 -10.25026 -9.93978 -8.86263 -7.86609 -5.37374 -0.40443 0.17671 1.44775 1.46673 1.57280 1.63357 1.98656 2.50298 2.76886 3.01191 3.27275 3.60172 3.66025 3.81701 3.98485 4.02684 4.17133 4.21540 4.37951 4.51338 4.61218 4.64822 4.73287 4.78717 4.79783 4.85855 4.99392 5.00608 5.06063 5.14080 5.26605 5.27940 5.28396 5.40086 5.60477 5.67331 5.67588 6.28994 6.36887 6.80524 7.08079 7.11257 7.80315 8.23827 9.16862 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.003130 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.165312 B = 8942.987766 C = 9248.475660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.117 3.883 5 C -0.102 4.102 6 N -0.483 5.483 7 C 0.067 3.933 8 C 0.560 3.440 9 O -0.576 6.576 10 N -0.693 5.693 11 C 0.113 3.887 12 C 0.148 3.852 13 N -0.615 5.615 14 C 0.173 3.827 15 C -0.269 4.269 16 H 0.069 0.931 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.288 1.288 23 C -0.134 4.134 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.179 0.821 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.418 0.582 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.031 0.969 39 H 0.250 0.750 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.363 20.404 -1.583 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.023 4.023 5 C -0.159 4.159 6 N -0.197 5.197 7 C -0.070 4.070 8 C 0.346 3.654 9 O -0.456 6.456 10 N -0.344 5.344 11 C -0.013 4.013 12 C 0.021 3.979 13 N -0.339 5.339 14 C 0.028 3.972 15 C -0.399 4.399 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.156 4.156 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.197 0.803 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.255 0.745 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.656 19.492 -1.608 27.729 hybrid contribution -0.010 -0.969 0.637 1.160 sum -19.667 18.523 -0.971 27.034 Atomic orbital electron populations 1.20926 0.87094 1.04804 1.04203 1.20738 0.98853 0.91633 0.94089 1.22509 0.94201 1.00157 0.99242 1.21972 0.92556 0.93854 0.93913 1.20844 1.00237 0.90494 1.04290 1.67341 1.41851 0.97978 1.12559 1.20830 0.92130 0.91369 1.02624 1.18402 0.82655 0.88041 0.76272 1.90745 1.70717 1.31803 1.52362 1.45758 1.05555 1.10833 1.72227 1.21990 0.93487 0.85365 1.00474 1.20910 0.88009 0.87990 1.00979 1.44025 1.62663 1.24088 1.03098 1.20613 0.95953 0.95549 0.85046 1.19540 1.08708 1.23042 0.88617 0.91292 1.25806 0.95639 1.02590 1.00528 1.70232 1.15239 1.39868 1.32845 0.85165 0.77541 0.78236 0.79260 1.19338 1.21708 1.21422 1.22103 0.93264 1.00719 0.99499 0.89127 0.88434 0.90702 0.80339 0.89193 0.90860 0.87696 0.74468 0.93756 0.93145 0.91798 0.92413 0.96918 0.96585 0.95081 0.94084 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.06 71.24 0.72 -0.26 16 2 C -0.05 -0.73 5.91 -19.69 -0.12 -0.84 16 3 C -0.14 -1.87 9.45 22.44 0.21 -1.66 16 4 C 0.12 2.08 6.78 42.68 0.29 2.36 16 5 C -0.10 -1.07 10.17 71.23 0.72 -0.34 16 6 N -0.48 -12.11 9.45 -173.09 -1.64 -13.74 16 7 C 0.07 1.93 6.75 41.91 0.28 2.21 16 8 C 0.56 19.81 7.81 86.88 0.68 20.49 16 9 O -0.58 -24.20 16.32 -3.77 -0.06 -24.26 16 10 N -0.69 -23.36 5.54 -465.68 -2.58 -25.94 16 11 C 0.11 4.47 6.00 86.38 0.52 4.99 16 12 C 0.15 6.10 5.76 86.38 0.50 6.60 16 13 N -0.62 -31.87 2.92 -726.93 -2.12 -34.00 16 14 C 0.17 8.84 8.98 127.77 1.15 9.99 16 15 C -0.27 -15.23 9.65 84.04 0.81 -14.41 16 16 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 17 C -0.05 -2.88 5.10 84.86 0.43 -2.45 16 18 N -0.94 -56.21 10.71 21.65 0.23 -55.98 16 19 Si 0.97 46.20 29.57 68.60 2.03 48.23 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 C -0.13 -3.21 9.34 22.61 0.21 -3.00 16 24 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.10 0.40 8.10 -2.39 -0.02 0.38 16 26 H 0.07 0.67 8.10 -2.38 -0.02 0.66 16 27 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.42 12.23 7.80 -92.71 -0.72 11.51 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 2.36 8.07 -2.38 -0.02 2.34 16 35 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 36 H 0.01 0.69 7.34 -2.38 -0.02 0.67 16 37 H 0.02 0.86 7.34 -2.39 -0.02 0.84 16 38 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.14 3.42 7.64 -2.91 -0.02 3.40 16 Total: -1.00 -73.49 341.09 2.57 -70.92 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.31 Total: 11.10 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.40 Total: 23.68 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -6.11 Total: -129.66 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.49 2.57 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753055240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.755 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds