Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39836 * 126.46088 * 2 1 4 4 C 1.35455 * 107.86613 * 179.75430 * 3 2 1 5 5 N 1.35529 * 108.87165 * 0.39147 * 4 3 2 6 6 C 1.46500 * 125.67761 * 179.86708 * 5 4 3 7 7 C 1.37655 * 108.64342 * 359.60501 * 5 4 3 8 8 C 1.46681 * 126.23284 * 180.20819 * 7 5 4 9 9 O 1.21694 * 119.99981 * 99.63906 * 8 7 5 10 10 N 1.34769 * 119.99927 * 279.64130 * 8 7 5 11 11 C 1.46498 * 120.00268 * 185.02438 * 10 8 7 12 12 C 1.50693 * 109.47453 * 179.97438 * 11 10 8 13 13 C 1.31003 * 120.00484 * 127.16212 * 12 11 10 14 14 C 1.50700 * 119.99668 * 7.57406 * 13 12 11 15 15 N 1.46493 * 109.47411 * 127.01666 * 14 13 12 16 16 C 1.36939 * 120.00157 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00169 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99552 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00008 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46846 * 89.99898 * 20 18 16 22 22 H 1.48495 * 109.47227 * 209.99570 * 20 18 16 23 23 H 1.48496 * 109.47174 * 329.99990 * 20 18 16 24 24 H 1.08995 * 109.47270 * 270.00923 * 1 2 3 25 25 H 1.09001 * 109.46698 * 30.00732 * 1 2 3 26 26 H 1.08999 * 109.47223 * 150.00059 * 1 2 3 27 27 H 1.08001 * 126.06457 * 359.95158 * 3 2 1 28 28 H 1.08001 * 125.56149 * 180.24101 * 4 3 2 29 29 H 1.09004 * 109.47137 * 264.64181 * 6 5 4 30 30 H 1.09002 * 109.47184 * 144.64444 * 6 5 4 31 31 H 1.09001 * 109.47139 * 24.64055 * 6 5 4 32 32 H 0.97003 * 119.99937 * 5.01978 * 10 8 7 33 33 H 1.09004 * 109.46881 * 299.99978 * 11 10 8 34 34 H 1.08998 * 109.47012 * 59.99422 * 11 10 8 35 35 H 1.08004 * 120.00135 * 307.16747 * 12 11 10 36 36 H 1.07999 * 120.00306 * 187.56989 * 13 12 11 37 37 H 1.09004 * 109.47266 * 247.02020 * 14 13 12 38 38 H 1.09003 * 109.47166 * 7.01472 * 14 13 12 39 39 H 0.96995 * 120.00082 * 359.97438 * 15 14 13 40 40 H 0.97005 * 119.99152 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 0.0055 5 7 3.6284 -0.6625 0.0002 6 6 4.8226 -1.5112 0.0009 7 6 2.3263 -1.1089 0.0002 8 6 1.8898 -2.5093 -0.0004 9 8 1.5404 -3.0382 1.0384 10 7 1.8758 -3.2102 -1.1514 11 6 1.3370 -4.5723 -1.1731 12 6 1.4363 -5.1298 -2.5696 13 6 2.0172 -6.2861 -2.7736 14 6 2.4330 -7.1375 -1.6018 15 7 1.8751 -8.4835 -1.7537 16 6 2.1215 -9.4382 -0.8034 17 1 2.7269 -9.1987 0.0583 18 6 1.5932 -10.7138 -0.9476 19 7 0.8550 -11.0054 -1.9976 20 14 1.9300 -12.0162 0.3484 21 1 0.8714 -11.9647 1.3887 22 1 1.9340 -13.3580 -0.2877 23 1 3.2521 -11.7612 0.9745 24 1 -0.3633 0.0002 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 2.0137 2.1548 -0.0007 28 1 4.4973 1.3252 0.0106 29 1 5.0665 -1.7959 -1.0227 30 1 4.6313 -2.4072 0.5914 31 1 5.6584 -0.9619 0.4343 32 1 2.2225 -2.8128 -1.9656 33 1 1.9086 -5.2001 -0.4894 34 1 0.2923 -4.5548 -0.8627 35 1 1.0287 -4.5759 -3.4024 36 1 2.1980 -6.6292 -3.7816 37 1 3.5208 -7.1973 -1.5639 38 1 2.0613 -6.6921 -0.6790 39 1 1.3310 -8.6985 -2.5274 40 1 0.4855 -11.8967 -2.0981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754114422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = 46.568158 kcal Electronic energy + Delta-G solvation = -20536.368037 eV Core-core repulsion = 17353.061793 eV Total energy + Delta-G solvation = -3183.306244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55977 -39.19324 -36.56697 -34.52904 -33.92309 -32.86863 -30.71980 -30.25406 -28.59067 -26.55928 -25.42675 -24.82660 -22.50525 -22.20556 -20.43988 -19.75585 -18.49909 -17.59870 -16.85421 -16.46691 -16.03680 -15.49730 -15.19666 -14.68257 -14.34648 -14.07998 -13.57722 -13.47852 -13.43260 -13.27893 -13.18851 -12.98913 -12.65834 -12.43027 -12.20994 -12.16392 -11.77945 -11.68527 -10.97429 -10.81641 -10.46657 -10.21264 -10.05398 -9.79497 -9.23366 -9.05525 -8.75305 -8.64099 -8.26623 -6.93961 -5.78356 -3.07697 1.69505 2.15515 2.24878 2.66666 2.86834 3.42084 3.44211 3.49340 3.50808 4.44579 4.59966 4.62152 4.80832 4.82828 5.00010 5.06449 5.12443 5.15980 5.26595 5.52183 5.54711 5.62588 5.64583 5.83351 5.86793 5.88962 5.93213 6.15294 6.21093 6.27093 6.50124 6.54102 6.67755 6.83633 6.84045 7.01909 7.10455 7.40765 7.68827 8.09080 8.40116 9.51532 10.07063 10.42412 11.44432 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002939 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.026518 B = 9524.642018 C = 9654.228494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.113 4.113 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.425 5.425 6 C 0.066 3.934 7 C -0.043 4.043 8 C 0.587 3.413 9 O -0.523 6.523 10 N -0.712 5.712 11 C 0.139 3.861 12 C -0.199 4.199 13 C -0.108 4.108 14 C 0.162 3.838 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 25.652 -0.775 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.226 4.226 4 C -0.129 4.129 5 N -0.100 5.100 6 C -0.075 4.075 7 C -0.156 4.156 8 C 0.371 3.629 9 O -0.397 6.397 10 N -0.364 5.364 11 C 0.017 3.983 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.035 3.965 15 N -0.372 5.372 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.184 0.816 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.804 24.884 0.138 25.552 hybrid contribution 0.220 -0.623 -0.107 0.669 sum 6.024 24.261 0.031 24.997 Atomic orbital electron populations 1.20199 0.89747 1.02078 1.02125 1.19763 0.95341 0.90903 1.06033 1.20666 0.91710 0.98429 1.11820 1.21868 0.99399 0.82445 1.09225 1.43855 1.05068 1.06321 1.54777 1.22169 0.85841 0.95648 1.03851 1.20117 0.83988 0.93520 1.17956 1.17123 0.78392 0.83581 0.83806 1.90879 1.47575 1.69607 1.31678 1.46102 1.63068 1.16060 1.11124 1.20631 1.00069 0.81280 0.96312 1.22581 1.03598 0.99180 0.96525 1.23306 0.94246 0.94684 1.00525 1.20008 0.96597 0.86364 0.93540 1.42266 1.61671 1.05898 1.27350 1.19244 1.26386 0.90575 1.01079 0.91067 1.24763 1.00337 0.97678 0.98138 1.69670 1.38605 1.20781 1.29075 0.86157 0.77856 0.81222 0.80769 1.21582 1.21717 1.20699 0.91439 0.91512 0.92224 0.84180 0.81644 0.90269 0.89667 0.89143 0.76564 0.89107 0.90815 0.86962 0.86831 0.95484 0.94688 0.78139 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.20 36.01 0.37 -0.49 16 2 C -0.11 -1.31 6.21 -104.16 -0.65 -1.96 16 3 C -0.20 -1.94 10.76 -39.98 -0.43 -2.37 16 4 C 0.00 0.03 11.37 -16.91 -0.19 -0.16 16 5 N -0.42 -4.22 3.16 -120.23 -0.38 -4.60 16 6 C 0.07 0.47 10.89 59.85 0.65 1.12 16 7 C -0.04 -0.53 6.63 -81.98 -0.54 -1.07 16 8 C 0.59 8.42 6.75 -12.86 -0.09 8.33 16 9 O -0.52 -9.72 17.12 5.19 0.09 -9.63 16 10 N -0.71 -8.68 5.54 -62.80 -0.35 -9.03 16 11 C 0.14 1.98 5.76 -5.20 -0.03 1.95 16 12 C -0.20 -2.68 9.63 -36.03 -0.35 -3.02 16 13 C -0.11 -1.73 9.63 -36.03 -0.35 -2.07 16 14 C 0.16 3.27 6.35 -5.20 -0.03 3.23 16 15 N -0.73 -18.74 5.59 -61.09 -0.34 -19.08 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 20 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 27 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.73 7.95 -51.93 -0.41 0.31 16 31 H 0.09 0.42 8.12 -51.93 -0.42 -0.01 16 32 H 0.40 3.87 8.45 -40.82 -0.34 3.53 16 33 H 0.09 1.49 5.30 -51.93 -0.28 1.22 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.73 5.30 -51.93 -0.27 0.45 16 39 H 0.38 10.36 7.66 -40.82 -0.31 10.05 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -34.63 344.81 -7.77 -42.40 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.81 Total: 8.87 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.88 Total: -4.04 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.35 Total: -60.47 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.63 -7.77 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754114422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.972 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds