Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39836 * 126.46088 * 2 1 4 4 C 1.35455 * 107.86613 * 179.75430 * 3 2 1 5 5 N 1.35529 * 108.87165 * 0.39147 * 4 3 2 6 6 C 1.46500 * 125.67761 * 179.86708 * 5 4 3 7 7 C 1.37655 * 108.64342 * 359.60501 * 5 4 3 8 8 C 1.46681 * 126.23284 * 180.20819 * 7 5 4 9 9 O 1.21694 * 119.99981 * 99.63906 * 8 7 5 10 10 N 1.34769 * 119.99927 * 279.64130 * 8 7 5 11 11 C 1.46498 * 120.00268 * 185.02438 * 10 8 7 12 12 C 1.50693 * 109.47453 * 179.97438 * 11 10 8 13 13 C 1.31003 * 120.00484 * 127.16212 * 12 11 10 14 14 C 1.50700 * 119.99668 * 7.57406 * 13 12 11 15 15 N 1.46493 * 109.47411 * 127.01666 * 14 13 12 16 16 C 1.36939 * 120.00157 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00169 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99552 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00008 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46846 * 89.99898 * 20 18 16 22 22 H 1.48495 * 109.47227 * 209.99570 * 20 18 16 23 23 H 1.48496 * 109.47174 * 329.99990 * 20 18 16 24 24 H 1.08995 * 109.47270 * 270.00923 * 1 2 3 25 25 H 1.09001 * 109.46698 * 30.00732 * 1 2 3 26 26 H 1.08999 * 109.47223 * 150.00059 * 1 2 3 27 27 H 1.08001 * 126.06457 * 359.95158 * 3 2 1 28 28 H 1.08001 * 125.56149 * 180.24101 * 4 3 2 29 29 H 1.09004 * 109.47137 * 264.64181 * 6 5 4 30 30 H 1.09002 * 109.47184 * 144.64444 * 6 5 4 31 31 H 1.09001 * 109.47139 * 24.64055 * 6 5 4 32 32 H 0.97003 * 119.99937 * 5.01978 * 10 8 7 33 33 H 1.09004 * 109.46881 * 299.99978 * 11 10 8 34 34 H 1.08998 * 109.47012 * 59.99422 * 11 10 8 35 35 H 1.08004 * 120.00135 * 307.16747 * 12 11 10 36 36 H 1.07999 * 120.00306 * 187.56989 * 13 12 11 37 37 H 1.09004 * 109.47266 * 247.02020 * 14 13 12 38 38 H 1.09003 * 109.47166 * 7.01472 * 14 13 12 39 39 H 0.96995 * 120.00082 * 359.97438 * 15 14 13 40 40 H 0.97005 * 119.99152 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 0.0055 5 7 3.6284 -0.6625 0.0002 6 6 4.8226 -1.5112 0.0009 7 6 2.3263 -1.1089 0.0002 8 6 1.8898 -2.5093 -0.0004 9 8 1.5404 -3.0382 1.0384 10 7 1.8758 -3.2102 -1.1514 11 6 1.3370 -4.5723 -1.1731 12 6 1.4363 -5.1298 -2.5696 13 6 2.0172 -6.2861 -2.7736 14 6 2.4330 -7.1375 -1.6018 15 7 1.8751 -8.4835 -1.7537 16 6 2.1215 -9.4382 -0.8034 17 1 2.7269 -9.1987 0.0583 18 6 1.5932 -10.7138 -0.9476 19 7 0.8550 -11.0054 -1.9976 20 14 1.9300 -12.0162 0.3484 21 1 0.8714 -11.9647 1.3887 22 1 1.9340 -13.3580 -0.2877 23 1 3.2521 -11.7612 0.9745 24 1 -0.3633 0.0002 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 2.0137 2.1548 -0.0007 28 1 4.4973 1.3252 0.0106 29 1 5.0665 -1.7959 -1.0227 30 1 4.6313 -2.4072 0.5914 31 1 5.6584 -0.9619 0.4343 32 1 2.2225 -2.8128 -1.9656 33 1 1.9086 -5.2001 -0.4894 34 1 0.2923 -4.5548 -0.8627 35 1 1.0287 -4.5759 -3.4024 36 1 2.1980 -6.6292 -3.7816 37 1 3.5208 -7.1973 -1.5639 38 1 2.0613 -6.6921 -0.6790 39 1 1.3310 -8.6985 -2.5274 40 1 0.4855 -11.8967 -2.0981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754114422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = 22.742915 kcal Electronic energy + Delta-G solvation = -20537.401177 eV Core-core repulsion = 17353.061793 eV Total energy + Delta-G solvation = -3184.339384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34888 -40.31397 -37.99682 -36.15428 -34.63754 -34.46478 -32.43937 -31.20745 -29.47061 -27.93999 -26.58464 -25.95477 -24.42439 -23.19181 -21.19695 -20.83422 -19.84543 -18.94295 -18.26181 -17.68887 -17.16524 -16.49996 -16.36864 -16.03264 -15.66134 -15.43333 -15.09393 -14.90440 -14.39109 -14.24867 -14.18638 -13.98240 -13.86187 -13.64728 -13.30687 -12.95003 -12.88838 -12.84766 -12.75752 -12.46975 -12.19208 -11.93188 -11.70962 -11.39990 -11.03971 -10.45308 -10.01657 -9.46679 -9.06689 -9.01854 -7.99543 -5.29166 0.82633 1.06605 1.21474 1.45486 1.47673 1.56028 1.93532 1.98542 2.43297 2.54824 3.34020 3.67706 3.80936 3.88162 4.07813 4.15203 4.22702 4.29163 4.32311 4.34587 4.40715 4.55098 4.61471 4.79492 4.80728 4.86029 4.88127 5.01674 5.10931 5.13708 5.23287 5.43510 5.43866 5.54432 5.81273 5.92227 6.05165 6.23232 6.35888 6.39624 7.02575 7.29290 8.02674 8.27448 9.23894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002939 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.026518 B = 9524.642018 C = 9654.228494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.125 4.125 3 C -0.217 4.217 4 C 0.020 3.980 5 N -0.427 5.427 6 C 0.061 3.939 7 C -0.080 4.080 8 C 0.592 3.408 9 O -0.576 6.576 10 N -0.694 5.694 11 C 0.140 3.860 12 C -0.160 4.160 13 C -0.130 4.130 14 C 0.161 3.839 15 N -0.741 5.741 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.269 1.269 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.206 0.794 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 27.904 -1.269 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C -0.240 4.240 4 C -0.114 4.114 5 N -0.102 5.102 6 C -0.080 4.080 7 C -0.192 4.192 8 C 0.378 3.622 9 O -0.455 6.455 10 N -0.346 5.346 11 C 0.017 3.983 12 C -0.179 4.179 13 C -0.150 4.150 14 C 0.035 3.965 15 N -0.384 5.384 16 C -0.383 4.383 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.194 1.194 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.179 0.821 28 H 0.223 0.777 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.253 0.747 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.208 0.792 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.071 27.177 -0.383 28.085 hybrid contribution -0.129 -1.154 0.063 1.163 sum 6.942 26.024 -0.320 26.935 Atomic orbital electron populations 1.20226 0.89515 1.02592 1.01852 1.20110 0.95965 0.91547 1.05697 1.20992 0.91914 0.98882 1.12241 1.22551 1.00487 0.82002 1.06312 1.44077 1.04714 1.07178 1.54211 1.22373 0.85706 0.95125 1.04763 1.19891 0.85704 0.92338 1.21295 1.17443 0.77219 0.84355 0.83228 1.90842 1.50082 1.70986 1.33541 1.45893 1.62209 1.15023 1.11462 1.20461 0.99248 0.82067 0.96536 1.22751 1.00450 0.97981 0.96717 1.23054 0.97125 0.95361 0.99427 1.20083 0.96189 0.84684 0.95532 1.42471 1.61776 1.07669 1.26507 1.19632 1.25734 0.91478 1.01470 0.90862 1.25602 1.00742 0.99853 1.00379 1.69816 1.39973 1.21046 1.30949 0.85120 0.78073 0.78275 0.78175 1.21407 1.21707 1.19401 0.92105 0.89298 0.93370 0.82119 0.77744 0.88712 0.91828 0.86129 0.74704 0.91557 0.91629 0.83231 0.85554 0.95616 0.95089 0.79192 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.20 71.24 0.73 -0.96 16 2 C -0.12 -2.77 6.21 -19.56 -0.12 -2.89 16 3 C -0.22 -3.62 10.76 22.01 0.24 -3.38 16 4 C 0.02 0.28 11.37 83.48 0.95 1.23 16 5 N -0.43 -7.63 3.16 -534.30 -1.69 -9.32 16 6 C 0.06 0.74 10.89 127.77 1.39 2.14 16 7 C -0.08 -1.93 6.63 40.35 0.27 -1.66 16 8 C 0.59 17.22 6.75 86.45 0.58 17.81 16 9 O -0.58 -22.39 17.12 -4.33 -0.07 -22.47 16 10 N -0.69 -16.55 5.54 -470.84 -2.61 -19.16 16 11 C 0.14 3.95 5.76 85.63 0.49 4.45 16 12 C -0.16 -3.99 9.63 25.64 0.25 -3.75 16 13 C -0.13 -4.03 9.63 25.64 0.25 -3.79 16 14 C 0.16 6.58 6.35 85.63 0.54 7.12 16 15 N -0.74 -38.85 5.59 -347.18 -1.94 -40.79 16 16 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 17 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -60.01 13.06 21.65 0.28 -59.72 16 20 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 27 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.07 7.95 -2.39 -0.02 1.05 16 31 H 0.12 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.42 7.33 8.45 -92.71 -0.78 6.54 16 33 H 0.07 2.25 5.30 -2.38 -0.01 2.24 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.03 1.32 5.30 -2.39 -0.01 1.31 16 39 H 0.38 20.66 7.66 -92.71 -0.71 19.95 16 40 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -76.87 344.81 2.43 -74.45 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.44 Total: 29.16 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.87 Total: -1.21 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.96 Total: -128.99 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.07 Total: -22.47 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.87 2.43 -74.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754114422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.191 kcal (2) G-P(sol) polarization free energy of solvation -76.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds