Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39836 * 126.45421 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71877 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21698 * 119.99848 * 99.34549 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.50702 * 109.47172 * 179.97438 * 11 10 8 13 13 C 1.30997 * 119.99839 * 125.00582 * 12 11 10 14 14 C 1.50702 * 119.99839 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.46990 * 124.99529 * 14 13 12 16 16 C 1.36936 * 119.99819 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99874 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00234 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99697 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47271 * 90.00186 * 20 18 16 22 22 H 1.48504 * 109.47129 * 210.00432 * 20 18 16 23 23 H 1.48502 * 109.47027 * 330.00349 * 20 18 16 24 24 H 1.08998 * 109.46653 * 270.01973 * 1 2 3 25 25 H 1.08997 * 109.47169 * 30.01842 * 1 2 3 26 26 H 1.09003 * 109.47050 * 150.02545 * 1 2 3 27 27 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 28 28 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 29 29 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 30 30 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 31 31 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 32 32 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 33 33 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 34 34 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 35 35 H 1.08000 * 119.99993 * 304.99576 * 12 11 10 36 36 H 1.08000 * 120.00168 * 359.97438 * 13 12 11 37 37 H 1.08997 * 109.47268 * 244.99140 * 14 13 12 38 38 H 1.09000 * 109.47269 * 5.00083 * 14 13 12 39 39 H 0.96998 * 120.00105 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00193 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0063 5 7 3.6285 -0.6624 0.0006 6 6 4.8227 -1.5110 0.0010 7 6 2.3263 -1.1088 0.0004 8 6 1.8900 -2.5092 0.0000 9 8 1.5455 -3.0395 1.0398 10 7 1.8706 -3.2087 -1.1518 11 6 1.3291 -4.5698 -1.1732 12 6 1.4224 -5.1257 -2.5708 13 6 2.0376 -6.2625 -2.7838 14 6 2.1304 -6.8187 -4.1813 15 7 3.5350 -7.0680 -4.5153 16 6 3.8669 -7.5779 -5.7421 17 1 3.0933 -7.7958 -6.4636 18 6 5.1976 -7.8137 -6.0589 19 7 6.1404 -7.5477 -5.1797 20 14 5.6504 -8.5086 -7.7326 21 1 5.8794 -7.3934 -8.6861 22 1 6.8885 -9.3199 -7.6133 23 1 4.5434 -9.3649 -8.2290 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 2.0136 2.1549 -0.0004 28 1 4.4972 1.3253 0.0119 29 1 5.0663 -1.7959 -1.0225 30 1 4.6316 -2.4068 0.5918 31 1 5.6586 -0.9616 0.4341 32 1 2.2152 -2.8110 -1.9667 33 1 1.9018 -5.1995 -0.4923 34 1 0.2855 -4.5506 -0.8592 35 1 0.9821 -4.5869 -3.3968 36 1 2.4781 -6.8012 -1.9579 37 1 1.5720 -7.7530 -4.2384 38 1 1.7112 -6.1011 -4.8866 39 1 4.2298 -6.8720 -3.8675 40 1 7.0703 -7.7128 -5.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754114423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 37.270305 kcal Electronic energy + Delta-G solvation = -20358.271356 eV Core-core repulsion = 17174.561928 eV Total energy + Delta-G solvation = -3183.709429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53000 -39.20345 -36.30401 -34.73787 -33.88376 -32.88168 -30.87409 -30.26660 -28.60217 -27.01248 -25.39086 -24.26369 -22.44920 -21.69160 -20.43957 -20.00101 -19.03339 -17.63897 -17.13878 -16.36800 -15.90565 -15.35877 -15.19266 -14.75585 -14.21931 -14.06458 -13.63643 -13.47101 -13.42104 -13.28214 -13.23098 -12.94892 -12.76595 -12.18097 -12.16095 -12.04817 -11.88996 -11.68067 -11.07562 -10.86471 -10.68455 -10.28021 -10.10924 -9.84871 -9.33648 -9.04913 -8.77286 -8.71224 -8.23812 -6.99659 -5.82670 -3.12255 1.72115 2.15839 2.25000 2.70036 2.87761 3.39791 3.41436 3.45204 3.46898 4.51512 4.55237 4.62173 4.84771 4.92586 4.94712 5.08614 5.16007 5.21223 5.23302 5.50431 5.54026 5.55580 5.61593 5.73568 5.87800 5.89490 5.94685 6.08222 6.18372 6.23963 6.42719 6.52787 6.70883 6.84949 6.87582 7.05926 7.09434 7.36928 7.64057 8.03266 8.35716 9.47131 10.02978 10.38317 11.40088 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.003032 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.021233 B = 9234.025959 C = 9900.808931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.113 4.113 3 C -0.203 4.203 4 C 0.006 3.994 5 N -0.423 5.423 6 C 0.065 3.935 7 C -0.045 4.045 8 C 0.591 3.409 9 O -0.530 6.530 10 N -0.712 5.712 11 C 0.154 3.846 12 C -0.202 4.202 13 C -0.105 4.105 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 16.511 10.809 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.227 4.227 4 C -0.127 4.127 5 N -0.098 5.098 6 C -0.076 4.076 7 C -0.159 4.159 8 C 0.375 3.625 9 O -0.406 6.406 10 N -0.364 5.364 11 C 0.031 3.969 12 C -0.221 4.221 13 C -0.125 4.125 14 C 0.045 3.955 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.184 0.816 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.351 15.763 11.388 20.789 hybrid contribution 0.903 -0.112 -1.120 1.443 sum -6.448 15.651 10.268 19.798 Atomic orbital electron populations 1.20189 0.89800 1.02078 1.01969 1.19742 0.95286 0.90911 1.06158 1.20660 0.91702 0.98420 1.11908 1.21895 0.99446 0.82448 1.08938 1.43874 1.05085 1.06370 1.54505 1.22198 0.85736 0.95478 1.04219 1.20056 0.84096 0.93423 1.18278 1.17133 0.78021 0.83651 0.83681 1.90840 1.48247 1.69743 1.31724 1.46141 1.62853 1.16017 1.11345 1.20382 0.99174 0.81720 0.95579 1.22685 1.04618 0.98456 0.96380 1.23343 0.94153 0.95689 0.99281 1.19833 0.88783 0.97074 0.89798 1.42295 1.00782 1.77684 1.16651 1.19249 0.91805 1.34570 0.91703 0.91048 1.24763 0.95688 1.02175 0.98313 1.69666 0.99651 1.54371 1.34475 0.86156 0.77707 0.78549 0.83579 1.21649 1.21700 1.20675 0.91545 0.91474 0.92310 0.84160 0.81577 0.89903 0.89795 0.89063 0.75984 0.90996 0.90843 0.86649 0.87254 0.95066 0.95627 0.78176 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.20 36.01 0.37 -0.47 16 2 C -0.11 -1.35 6.21 -104.16 -0.65 -1.99 16 3 C -0.20 -2.06 10.76 -39.98 -0.43 -2.49 16 4 C 0.01 0.06 11.37 -16.91 -0.19 -0.14 16 5 N -0.42 -4.58 3.16 -120.24 -0.38 -4.96 16 6 C 0.07 0.55 10.89 59.85 0.65 1.20 16 7 C -0.05 -0.58 6.63 -81.98 -0.54 -1.13 16 8 C 0.59 8.33 6.75 -12.86 -0.09 8.24 16 9 O -0.53 -9.25 17.12 5.19 0.09 -9.16 16 10 N -0.71 -8.79 5.54 -62.80 -0.35 -9.13 16 11 C 0.15 1.94 6.12 -5.19 -0.03 1.91 16 12 C -0.20 -2.70 9.24 -36.02 -0.33 -3.03 16 13 C -0.11 -1.67 9.24 -36.02 -0.33 -2.00 16 14 C 0.17 3.39 6.70 -5.19 -0.03 3.36 16 15 N -0.73 -18.39 5.59 -61.08 -0.34 -18.73 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 31 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.41 4.51 8.45 -40.82 -0.34 4.17 16 33 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.47 7.84 -52.49 -0.41 1.06 16 36 H 0.11 1.70 7.84 -52.49 -0.41 1.29 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 39 H 0.38 10.17 7.66 -40.82 -0.31 9.86 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -33.58 349.30 -7.92 -41.50 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.04 Total: 9.25 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.86 Total: -3.92 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.35 Total: -60.06 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.58 -7.92 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754114423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.766 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds