Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39836 * 126.45421 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71877 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21698 * 119.99848 * 99.34549 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.50702 * 109.47172 * 179.97438 * 11 10 8 13 13 C 1.30997 * 119.99839 * 125.00582 * 12 11 10 14 14 C 1.50702 * 119.99839 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.46990 * 124.99529 * 14 13 12 16 16 C 1.36936 * 119.99819 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99874 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00234 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99697 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47271 * 90.00186 * 20 18 16 22 22 H 1.48504 * 109.47129 * 210.00432 * 20 18 16 23 23 H 1.48502 * 109.47027 * 330.00349 * 20 18 16 24 24 H 1.08998 * 109.46653 * 270.01973 * 1 2 3 25 25 H 1.08997 * 109.47169 * 30.01842 * 1 2 3 26 26 H 1.09003 * 109.47050 * 150.02545 * 1 2 3 27 27 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 28 28 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 29 29 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 30 30 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 31 31 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 32 32 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 33 33 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 34 34 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 35 35 H 1.08000 * 119.99993 * 304.99576 * 12 11 10 36 36 H 1.08000 * 120.00168 * 359.97438 * 13 12 11 37 37 H 1.08997 * 109.47268 * 244.99140 * 14 13 12 38 38 H 1.09000 * 109.47269 * 5.00083 * 14 13 12 39 39 H 0.96998 * 120.00105 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00193 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0063 5 7 3.6285 -0.6624 0.0006 6 6 4.8227 -1.5110 0.0010 7 6 2.3263 -1.1088 0.0004 8 6 1.8900 -2.5092 0.0000 9 8 1.5455 -3.0395 1.0398 10 7 1.8706 -3.2087 -1.1518 11 6 1.3291 -4.5698 -1.1732 12 6 1.4224 -5.1257 -2.5708 13 6 2.0376 -6.2625 -2.7838 14 6 2.1304 -6.8187 -4.1813 15 7 3.5350 -7.0680 -4.5153 16 6 3.8669 -7.5779 -5.7421 17 1 3.0933 -7.7958 -6.4636 18 6 5.1976 -7.8137 -6.0589 19 7 6.1404 -7.5477 -5.1797 20 14 5.6504 -8.5086 -7.7326 21 1 5.8794 -7.3934 -8.6861 22 1 6.8885 -9.3199 -7.6133 23 1 4.5434 -9.3649 -8.2290 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 2.0136 2.1549 -0.0004 28 1 4.4972 1.3253 0.0119 29 1 5.0663 -1.7959 -1.0225 30 1 4.6316 -2.4068 0.5918 31 1 5.6586 -0.9616 0.4341 32 1 2.2152 -2.8110 -1.9667 33 1 1.9018 -5.1995 -0.4923 34 1 0.2855 -4.5506 -0.8592 35 1 0.9821 -4.5869 -3.3968 36 1 2.4781 -6.8012 -1.9579 37 1 1.5720 -7.7530 -4.2384 38 1 1.7112 -6.1011 -4.8866 39 1 4.2298 -6.8720 -3.8675 40 1 7.0703 -7.7128 -5.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754114423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 15.108951 kcal Electronic energy + Delta-G solvation = -20359.232345 eV Core-core repulsion = 17174.561928 eV Total energy + Delta-G solvation = -3184.670417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35311 -40.28177 -37.70256 -36.27562 -34.64659 -34.45624 -32.53343 -31.22003 -29.57390 -28.33162 -26.28885 -25.79454 -23.93564 -22.89304 -21.33718 -21.05095 -20.15334 -19.12405 -18.48577 -17.44917 -16.97037 -16.58405 -16.33768 -16.05027 -15.61250 -15.32261 -15.15594 -14.79421 -14.58184 -14.19685 -14.11025 -13.98405 -13.65985 -13.53382 -13.35173 -12.92798 -12.87730 -12.86777 -12.75873 -12.46893 -12.21091 -12.02097 -11.81417 -11.42323 -11.04248 -10.47283 -10.06739 -9.47999 -9.07410 -9.03070 -7.97652 -5.27539 0.82053 1.07319 1.20424 1.47832 1.49235 1.57942 1.92817 1.99313 2.43201 2.55976 3.36396 3.63936 3.75654 3.86280 4.05244 4.21321 4.21620 4.28918 4.32505 4.39979 4.43067 4.59175 4.62241 4.67478 4.80800 4.86104 4.90271 4.98161 5.10569 5.13496 5.18087 5.42262 5.46370 5.61733 5.79827 5.92034 6.05267 6.24558 6.32094 6.36573 6.97617 7.30800 8.04316 8.28558 9.25810 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.003032 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.021233 B = 9234.025959 C = 9900.808931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.125 4.125 3 C -0.216 4.216 4 C 0.016 3.984 5 N -0.428 5.428 6 C 0.061 3.939 7 C -0.082 4.082 8 C 0.596 3.404 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.156 3.844 12 C -0.163 4.163 13 C -0.128 4.128 14 C 0.173 3.827 15 N -0.744 5.744 16 C -0.250 4.250 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.269 1.269 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.162 0.838 28 H 0.203 0.797 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.374 0.626 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 18.057 10.130 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C -0.240 4.240 4 C -0.117 4.117 5 N -0.103 5.103 6 C -0.079 4.079 7 C -0.195 4.195 8 C 0.382 3.618 9 O -0.450 6.450 10 N -0.353 5.353 11 C 0.033 3.967 12 C -0.182 4.182 13 C -0.147 4.147 14 C 0.047 3.953 15 N -0.387 5.387 16 C -0.381 4.381 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.194 1.194 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.179 0.821 28 H 0.219 0.781 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.249 0.751 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.206 0.794 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.657 17.309 10.680 21.732 hybrid contribution 0.908 -0.500 -0.867 1.352 sum -6.749 16.809 9.813 20.600 Atomic orbital electron populations 1.20226 0.89139 1.02641 1.02014 1.20132 0.96151 0.91365 1.05631 1.21000 0.91835 0.99005 1.12150 1.22550 1.00586 0.82062 1.06548 1.44083 1.04833 1.07169 1.54223 1.22341 0.85883 0.95277 1.04435 1.19988 0.85523 0.92774 1.21205 1.17330 0.77108 0.84192 0.83198 1.90808 1.50284 1.70812 1.33102 1.46050 1.62238 1.15682 1.11378 1.20337 0.99731 0.81775 0.94826 1.22736 1.01652 0.96799 0.96998 1.23016 0.97086 0.97231 0.97391 1.19913 0.85911 0.97368 0.92075 1.42524 1.02830 1.77585 1.15769 1.19670 0.92127 1.33622 0.92694 0.90427 1.25604 0.95776 1.03326 1.01997 1.69820 0.99676 1.56050 1.36413 0.85108 0.77277 0.77845 0.79329 1.21184 1.22159 1.19380 0.91733 0.89489 0.93138 0.82067 0.78053 0.89559 0.91371 0.86130 0.75118 0.91740 0.89783 0.85242 0.87275 0.95089 0.94927 0.79382 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.20 71.24 0.73 -0.88 16 2 C -0.12 -2.83 6.21 -19.56 -0.12 -2.96 16 3 C -0.22 -3.94 10.76 22.01 0.24 -3.70 16 4 C 0.02 0.26 11.37 83.48 0.95 1.21 16 5 N -0.43 -8.66 3.16 -534.32 -1.69 -10.35 16 6 C 0.06 0.96 10.89 127.77 1.39 2.35 16 7 C -0.08 -2.07 6.63 40.35 0.27 -1.80 16 8 C 0.60 16.83 6.75 86.45 0.58 17.41 16 9 O -0.57 -20.34 17.12 -4.34 -0.07 -20.42 16 10 N -0.70 -16.90 5.54 -470.82 -2.61 -19.51 16 11 C 0.16 3.79 6.12 85.63 0.52 4.31 16 12 C -0.16 -4.10 9.24 25.65 0.24 -3.86 16 13 C -0.13 -3.98 9.24 25.65 0.24 -3.74 16 14 C 0.17 6.73 6.70 85.63 0.57 7.30 16 15 N -0.74 -37.63 5.59 -347.16 -1.94 -39.58 16 16 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 20 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.03 7.96 -2.39 -0.02 1.01 16 27 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.28 7.95 -2.39 -0.02 1.26 16 31 H 0.12 1.13 8.12 -2.39 -0.02 1.11 16 32 H 0.41 8.76 8.45 -92.70 -0.78 7.98 16 33 H 0.06 1.71 7.79 -2.39 -0.02 1.69 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.13 2.96 7.84 -2.91 -0.02 2.94 16 36 H 0.11 3.40 7.84 -2.91 -0.02 3.38 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.03 1.23 7.79 -2.39 -0.02 1.21 16 39 H 0.37 20.13 7.66 -92.71 -0.71 19.42 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.24 349.30 2.46 -69.79 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.45 Total: 32.16 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 6.91 Total: -1.13 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -5.96 Total: -127.88 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.42 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.24 2.46 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754114423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.897 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds