Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38624 * 120.75546 * 2 1 4 4 C 1.38564 * 119.34895 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54778 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90483 * 359.97438 * 4 3 2 7 7 C 1.32721 * 121.64220 * 0.02562 * 6 4 3 8 8 C 1.48170 * 119.72454 * 179.97438 * 7 6 4 9 9 O 1.21506 * 120.00180 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99795 * 359.97438 * 8 7 6 11 11 C 1.46496 * 119.99965 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47464 * 325.00834 * 11 10 8 13 13 C 1.53006 * 109.46995 * 85.00573 * 11 10 8 14 14 C 1.52999 * 109.47487 * 205.00106 * 11 10 8 15 15 N 1.46504 * 109.46795 * 55.00145 * 14 11 10 16 16 C 1.36940 * 120.00178 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99711 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00219 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00139 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46896 * 90.00471 * 20 18 16 22 22 H 1.48498 * 109.47159 * 210.00044 * 20 18 16 23 23 H 1.48500 * 109.46889 * 330.00551 * 20 18 16 24 24 C 1.38594 * 120.75062 * 180.25486 * 2 1 3 25 25 H 1.08998 * 109.46885 * 89.99876 * 1 2 3 26 26 H 1.08997 * 109.47271 * 210.00500 * 1 2 3 27 27 H 1.09007 * 109.46976 * 330.00493 * 1 2 3 28 28 H 1.07995 * 120.32559 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46981 * 270.02237 * 5 4 3 30 30 H 1.09004 * 109.47092 * 30.01659 * 5 4 3 31 31 H 1.08995 * 109.47385 * 150.02030 * 5 4 3 32 32 H 0.97003 * 120.00044 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47002 * 299.99701 * 13 11 10 34 34 H 1.08993 * 109.46955 * 60.00138 * 13 11 10 35 35 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47756 * 174.99813 * 14 11 10 37 37 H 1.09001 * 109.47317 * 295.00696 * 14 11 10 38 38 H 0.97002 * 120.00414 * 359.97438 * 15 14 11 39 39 H 0.97000 * 120.00131 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.47364 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4496 -0.0011 6 7 4.2488 0.0126 -0.0005 7 6 3.6082 -1.1498 -0.0005 8 6 4.3805 -2.4143 -0.0011 9 8 3.7992 -3.4813 -0.0007 10 7 5.7279 -2.3810 -0.0022 11 6 6.4915 -3.6311 -0.0033 12 1 5.9629 -4.3804 0.5861 13 6 6.6490 -4.1312 -1.4408 14 6 7.8735 -3.3852 0.6053 15 7 7.7223 -2.7944 1.9374 16 6 8.8311 -2.4856 2.6794 17 1 9.8170 -2.6773 2.2824 18 6 8.6878 -1.9253 3.9412 19 7 7.4862 -1.6911 4.4248 20 14 10.2003 -1.5047 4.9537 21 1 10.6239 -0.1128 4.6560 22 1 9.8783 -1.6259 6.3982 23 1 11.3010 -2.4410 4.6115 24 6 2.2157 -1.1911 -0.0053 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6937 2.1366 -0.0004 29 1 4.5624 2.7611 -1.0289 30 1 3.8002 3.2190 0.5130 31 1 5.3267 2.3035 0.5120 32 1 6.1920 -1.5291 -0.0022 33 1 5.6645 -4.3065 -1.8744 34 1 7.1776 -3.3821 -2.0301 35 1 7.2176 -5.0612 -1.4417 36 1 8.4086 -4.3314 0.6863 37 1 8.4356 -2.7034 -0.0329 38 1 6.8368 -2.6218 2.2938 39 1 7.3861 -1.2999 5.3067 40 1 1.6958 -2.1376 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754273894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = -3.289345 kcal Electronic energy + Delta-G solvation = -21244.361482 eV Core-core repulsion = 18058.893255 eV Total energy + Delta-G solvation = -3185.468227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62113 -38.96888 -36.11822 -34.34613 -33.54445 -32.81863 -31.08792 -29.81366 -28.09861 -27.55093 -25.67617 -24.54715 -22.56667 -21.27952 -20.83280 -19.96059 -17.67990 -17.03707 -16.48623 -15.94961 -15.60870 -15.08880 -14.75948 -14.33315 -14.08073 -13.59495 -13.54361 -13.47854 -13.22931 -12.94769 -12.72021 -12.34657 -12.27234 -12.22306 -12.16015 -11.95879 -11.73520 -11.55007 -10.86509 -10.80611 -10.42443 -10.04444 -10.00444 -9.70043 -9.57918 -9.37974 -8.99437 -8.87339 -8.60003 -6.91035 -5.73014 -3.02908 0.72291 1.17887 2.94475 3.42078 3.45572 3.50124 3.52188 3.95052 4.15908 4.47194 4.60583 4.69970 4.91748 5.01974 5.20610 5.29631 5.31556 5.38329 5.51488 5.54277 5.56261 5.59090 5.62029 5.68368 5.70930 5.94762 6.06347 6.08022 6.14291 6.17236 6.23994 6.44626 6.53169 6.60897 6.74559 6.99158 7.71859 7.74523 8.04988 8.44317 8.55191 9.56054 10.12771 10.48088 11.49295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004896 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.196822 B = 5717.898215 C = 6773.693774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.158 4.158 4 C 0.132 3.868 5 C -0.105 4.105 6 N -0.455 5.455 7 C 0.097 3.903 8 C 0.571 3.429 9 O -0.544 6.544 10 N -0.687 5.687 11 C 0.130 3.870 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.145 3.855 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.124 4.124 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 6.061 -12.651 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.008 4.008 5 C -0.162 4.162 6 N -0.168 5.168 7 C -0.042 4.042 8 C 0.355 3.645 9 O -0.422 6.422 10 N -0.337 5.337 11 C 0.026 3.974 12 H 0.106 0.894 13 C -0.216 4.216 14 C 0.017 3.983 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.144 4.144 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.252 0.748 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.365 5.263 -12.584 17.754 hybrid contribution -0.141 0.756 0.852 1.148 sum -11.506 6.019 -11.732 17.500 Atomic orbital electron populations 1.20814 0.89844 1.03540 1.02874 1.20301 0.96953 0.92581 0.95903 1.22022 0.94818 0.98736 1.02219 1.21298 0.91097 0.93879 0.94564 1.20742 1.00893 0.91526 1.03067 1.67433 1.40962 0.97548 1.10871 1.21200 0.91614 0.92209 0.99135 1.17833 0.82696 0.87156 0.76831 1.90737 1.70177 1.29994 1.51282 1.45857 1.05309 1.10908 1.71666 1.21329 0.93412 0.86238 0.96457 0.89389 1.22100 1.01899 1.01270 0.96296 1.20980 0.92147 0.97054 0.88149 1.42363 1.06921 1.74677 1.13674 1.19216 0.87074 1.34022 0.96983 0.91130 1.24747 0.96464 1.01888 0.97700 1.69683 1.20301 1.49557 1.18318 0.86193 0.82184 0.78164 0.79643 1.21734 1.21828 1.20760 1.21969 0.93885 0.99412 0.99181 0.90495 0.90744 0.90927 0.84580 0.90391 0.90684 0.89739 0.74834 0.92442 0.92503 0.91524 0.94771 0.95727 0.77965 0.93560 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.06 36.01 0.36 -0.52 16 2 C -0.05 -0.57 5.91 -104.35 -0.62 -1.19 16 3 C -0.16 -1.75 9.45 -39.32 -0.37 -2.12 16 4 C 0.13 1.75 6.78 -82.61 -0.56 1.19 16 5 C -0.10 -1.08 10.17 36.00 0.37 -0.72 16 6 N -0.46 -7.43 9.45 -6.06 -0.06 -7.49 16 7 C 0.10 1.63 6.75 -83.00 -0.56 1.07 16 8 C 0.57 10.72 7.78 -12.18 -0.09 10.63 16 9 O -0.54 -11.16 15.99 5.36 0.09 -11.07 16 10 N -0.69 -12.65 4.51 -54.65 -0.25 -12.90 16 11 C 0.13 2.35 2.73 -67.93 -0.19 2.16 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 13 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 14 C 0.14 2.95 5.82 -4.04 -0.02 2.93 16 15 N -0.73 -18.93 5.43 -59.91 -0.33 -19.26 16 16 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.12 -1.76 9.34 -39.05 -0.36 -2.13 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.07 0.46 8.10 -51.92 -0.42 0.04 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 7.75 7.93 -40.82 -0.32 7.42 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.39 10.77 7.33 -40.82 -0.30 10.47 16 39 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.15 1.98 7.64 -52.49 -0.40 1.57 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -33.49 343.17 -7.64 -41.13 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.03 Total: 12.89 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.94 Total: 1.93 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: 0.10 Total: -67.69 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.49 -7.64 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754273894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.842 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds