Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38624 * 120.75546 * 2 1 4 4 C 1.38564 * 119.34895 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54778 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90483 * 359.97438 * 4 3 2 7 7 C 1.32721 * 121.64220 * 0.02562 * 6 4 3 8 8 C 1.48170 * 119.72454 * 179.97438 * 7 6 4 9 9 O 1.21506 * 120.00180 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99795 * 359.97438 * 8 7 6 11 11 C 1.46496 * 119.99965 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47464 * 325.00834 * 11 10 8 13 13 C 1.53006 * 109.46995 * 85.00573 * 11 10 8 14 14 C 1.52999 * 109.47487 * 205.00106 * 11 10 8 15 15 N 1.46504 * 109.46795 * 55.00145 * 14 11 10 16 16 C 1.36940 * 120.00178 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99711 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00219 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00139 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46896 * 90.00471 * 20 18 16 22 22 H 1.48498 * 109.47159 * 210.00044 * 20 18 16 23 23 H 1.48500 * 109.46889 * 330.00551 * 20 18 16 24 24 C 1.38594 * 120.75062 * 180.25486 * 2 1 3 25 25 H 1.08998 * 109.46885 * 89.99876 * 1 2 3 26 26 H 1.08997 * 109.47271 * 210.00500 * 1 2 3 27 27 H 1.09007 * 109.46976 * 330.00493 * 1 2 3 28 28 H 1.07995 * 120.32559 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46981 * 270.02237 * 5 4 3 30 30 H 1.09004 * 109.47092 * 30.01659 * 5 4 3 31 31 H 1.08995 * 109.47385 * 150.02030 * 5 4 3 32 32 H 0.97003 * 120.00044 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47002 * 299.99701 * 13 11 10 34 34 H 1.08993 * 109.46955 * 60.00138 * 13 11 10 35 35 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47756 * 174.99813 * 14 11 10 37 37 H 1.09001 * 109.47317 * 295.00696 * 14 11 10 38 38 H 0.97002 * 120.00414 * 359.97438 * 15 14 11 39 39 H 0.97000 * 120.00131 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.47364 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4496 -0.0011 6 7 4.2488 0.0126 -0.0005 7 6 3.6082 -1.1498 -0.0005 8 6 4.3805 -2.4143 -0.0011 9 8 3.7992 -3.4813 -0.0007 10 7 5.7279 -2.3810 -0.0022 11 6 6.4915 -3.6311 -0.0033 12 1 5.9629 -4.3804 0.5861 13 6 6.6490 -4.1312 -1.4408 14 6 7.8735 -3.3852 0.6053 15 7 7.7223 -2.7944 1.9374 16 6 8.8311 -2.4856 2.6794 17 1 9.8170 -2.6773 2.2824 18 6 8.6878 -1.9253 3.9412 19 7 7.4862 -1.6911 4.4248 20 14 10.2003 -1.5047 4.9537 21 1 10.6239 -0.1128 4.6560 22 1 9.8783 -1.6259 6.3982 23 1 11.3010 -2.4410 4.6115 24 6 2.2157 -1.1911 -0.0053 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6937 2.1366 -0.0004 29 1 4.5624 2.7611 -1.0289 30 1 3.8002 3.2190 0.5130 31 1 5.3267 2.3035 0.5120 32 1 6.1920 -1.5291 -0.0022 33 1 5.6645 -4.3065 -1.8744 34 1 7.1776 -3.3821 -2.0301 35 1 7.2176 -5.0612 -1.4417 36 1 8.4086 -4.3314 0.6863 37 1 8.4356 -2.7034 -0.0329 38 1 6.8368 -2.6218 2.2938 39 1 7.3861 -1.2999 5.3067 40 1 1.6958 -2.1376 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754273894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = -26.620029 kcal Electronic energy + Delta-G solvation = -21245.373177 eV Core-core repulsion = 18058.893255 eV Total energy + Delta-G solvation = -3186.479922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76190 -40.31212 -37.74781 -35.57394 -35.14333 -33.92721 -32.88099 -31.42482 -29.01282 -28.34121 -27.45990 -25.80142 -24.46979 -22.31679 -22.19361 -21.36059 -19.33040 -18.72364 -17.73607 -17.00206 -16.91528 -16.68450 -16.34249 -15.67530 -15.44420 -15.21111 -15.09340 -14.66400 -14.12551 -14.04463 -13.74517 -13.68520 -13.60275 -13.41048 -13.11750 -13.09770 -13.00577 -12.78162 -12.67488 -12.58675 -12.16232 -11.92681 -11.73274 -11.39161 -10.97791 -10.54606 -10.49473 -10.19912 -9.92029 -9.03404 -7.94856 -5.25607 -0.37575 0.19849 1.46814 1.49204 1.57664 1.66503 2.08547 2.55476 2.79784 3.05857 3.39206 3.62483 3.66956 3.81078 4.00058 4.01475 4.03264 4.26427 4.36969 4.47630 4.51032 4.62226 4.73157 4.77419 4.78705 4.82097 4.82617 4.90130 4.97964 5.06716 5.13744 5.25763 5.26184 5.28162 5.48085 5.51339 5.68483 6.24817 6.40681 6.83460 7.11803 7.31575 8.04750 8.28807 9.28546 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004896 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.196822 B = 5717.898215 C = 6773.693774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.144 4.144 4 C 0.113 3.887 5 C -0.102 4.102 6 N -0.487 5.487 7 C 0.063 3.937 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.688 5.688 11 C 0.135 3.865 12 H 0.064 0.936 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.745 5.745 16 C -0.246 4.246 17 H 0.081 0.919 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.267 1.267 24 C -0.134 4.134 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.180 0.820 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 7.618 -13.625 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.163 4.163 4 C -0.027 4.027 5 C -0.159 4.159 6 N -0.200 5.200 7 C -0.074 4.074 8 C 0.350 3.650 9 O -0.452 6.452 10 N -0.337 5.337 11 C 0.030 3.970 12 H 0.082 0.918 13 C -0.203 4.203 14 C 0.019 3.981 15 N -0.388 5.388 16 C -0.378 4.378 17 H 0.099 0.901 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.192 1.192 24 C -0.155 4.155 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.197 0.803 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.706 6.798 -13.607 19.194 hybrid contribution -0.075 0.311 1.094 1.140 sum -11.782 7.109 -12.514 18.599 Atomic orbital electron populations 1.20917 0.86771 1.04723 1.04354 1.20762 0.98994 0.91539 0.94107 1.22484 0.93944 1.00346 0.99528 1.21939 0.92730 0.93800 0.94214 1.20826 0.99883 0.90854 1.04311 1.67355 1.42156 0.98271 1.12243 1.21006 0.92444 0.91668 1.02307 1.18270 0.82742 0.87919 0.76031 1.90693 1.70592 1.31201 1.52757 1.45875 1.05465 1.10764 1.71621 1.21265 0.91722 0.85733 0.98257 0.91753 1.22002 1.02240 1.02482 0.93590 1.21140 0.93802 0.97161 0.85970 1.42563 1.05703 1.75070 1.15495 1.19674 0.88093 1.32750 0.97249 0.90084 1.25616 0.99342 1.02632 0.99142 1.69866 1.22648 1.51181 1.18468 0.85090 0.78899 0.78133 0.77302 1.21191 1.22475 1.19197 1.22108 0.93078 1.00781 0.99536 0.88674 0.90681 0.88666 0.80310 0.88594 0.87760 0.92054 0.75141 0.92852 0.91096 0.89442 0.93734 0.94390 0.79654 0.94170 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.06 71.24 0.72 -0.66 16 2 C -0.05 -0.98 5.91 -19.69 -0.12 -1.09 16 3 C -0.14 -2.79 9.45 22.44 0.21 -2.58 16 4 C 0.11 2.90 6.78 42.68 0.29 3.19 16 5 C -0.10 -1.93 10.17 71.23 0.72 -1.21 16 6 N -0.49 -16.31 9.45 -173.08 -1.64 -17.94 16 7 C 0.06 2.20 6.75 41.91 0.28 2.49 16 8 C 0.56 22.40 7.78 86.88 0.68 23.07 16 9 O -0.57 -24.78 15.99 -3.74 -0.06 -24.84 16 10 N -0.69 -26.44 4.51 -445.10 -2.01 -28.45 16 11 C 0.13 4.96 2.73 44.99 0.12 5.08 16 12 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -4.10 9.48 71.98 0.68 -3.41 16 14 C 0.15 5.95 5.82 86.38 0.50 6.45 16 15 N -0.75 -39.30 5.43 -343.46 -1.87 -41.17 16 16 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 20 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 C -0.13 -3.87 9.34 22.61 0.21 -3.66 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 27 H 0.09 0.79 8.10 -2.38 -0.02 0.77 16 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.34 8.08 -2.38 -0.02 1.32 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 16.14 7.93 -92.71 -0.74 15.40 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.37 21.55 7.33 -92.71 -0.68 20.87 16 39 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.14 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -74.81 343.17 1.99 -72.82 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.37 Total: 41.39 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.61 Total: 10.56 kcal Atomic # 7 Polarization: -143.59 SS G_CDS: -5.23 Total: -148.82 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.81 1.99 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754273894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.205 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds