Wall clock time and date at job start Mon Mar 30 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38404 * 120.85650 * 2 1 4 4 C 1.38303 * 119.30590 * 179.97438 * 3 2 1 5 5 N 1.31963 * 121.08345 * 0.02562 * 4 3 2 6 6 C 1.31659 * 121.87708 * 359.97438 * 5 4 3 7 7 C 1.39569 * 120.56396 * 359.74362 * 6 5 4 8 8 C 1.47845 * 120.55619 * 180.28138 * 7 6 5 9 9 O 1.21556 * 119.99658 * 126.61322 * 8 7 6 10 10 N 1.34776 * 120.00321 * 306.61473 * 8 7 6 11 11 C 1.46496 * 119.99861 * 4.21594 * 10 8 7 12 12 C 1.46500 * 119.99841 * 184.21009 * 10 8 7 13 13 C 1.52993 * 109.47038 * 90.00288 * 12 10 8 14 14 C 1.53003 * 109.47392 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.36935 * 119.99917 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00015 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00154 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99766 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46872 * 60.00065 * 20 18 16 22 22 H 1.48495 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46964 * 300.00355 * 20 18 16 24 24 H 1.09000 * 109.47218 * 85.26408 * 1 2 3 25 25 H 1.09005 * 109.46958 * 325.26013 * 1 2 3 26 26 H 1.08997 * 109.46661 * 205.26139 * 1 2 3 27 27 H 1.08003 * 120.34270 * 359.96596 * 3 2 1 28 28 H 1.08005 * 119.45861 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.72120 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47440 * 84.63041 * 11 10 8 31 31 H 1.09002 * 109.46974 * 204.62948 * 11 10 8 32 32 H 1.08996 * 109.47286 * 324.62490 * 11 10 8 33 33 H 1.09009 * 109.47162 * 210.00377 * 12 10 8 34 34 H 1.08997 * 109.47360 * 330.00032 * 12 10 8 35 35 H 1.09001 * 109.47567 * 299.99551 * 13 12 10 36 36 H 1.09004 * 109.47375 * 60.00091 * 13 12 10 37 37 H 1.09002 * 109.47068 * 300.00702 * 14 13 12 38 38 H 1.08997 * 109.46952 * 59.99777 * 14 13 12 39 39 H 0.96993 * 119.99840 * 359.97438 * 15 14 13 40 40 H 0.96999 * 119.99963 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6198 -1.1535 0.0005 7 6 2.2249 -1.2016 0.0059 8 6 1.5176 -2.4999 0.0122 9 8 0.6787 -2.7308 0.8610 10 7 1.8030 -3.4273 -0.9232 11 6 2.8777 -3.1868 -1.8892 12 6 1.0385 -4.6760 -0.9737 13 6 -0.1733 -4.4954 -1.8900 14 6 -0.9714 -5.7996 -1.9433 15 7 -2.1321 -5.6265 -2.8202 16 6 -2.9987 -6.6672 -3.0224 17 1 -2.8263 -7.6158 -2.5358 18 6 -4.0982 -6.5033 -3.8537 19 7 -4.3080 -5.3474 -4.4472 20 14 -5.2801 -7.9233 -4.1302 21 1 -5.8706 -8.3358 -2.8316 22 1 -6.3620 -7.4944 -5.0525 23 1 -4.5469 -9.0687 -4.7267 24 1 -0.3633 0.0848 -1.0241 25 1 -0.3633 0.8445 0.5856 26 1 -0.3632 -0.9294 0.4386 27 1 1.6965 2.1346 -0.0006 28 1 4.1558 2.0764 0.0001 29 1 4.1871 -2.0725 0.0010 30 1 3.8322 -3.4781 -1.4510 31 1 2.6962 -3.7752 -2.7886 32 1 2.9043 -2.1281 -2.1471 33 1 1.6716 -5.4742 -1.3615 34 1 0.7001 -4.9357 0.0293 35 1 -0.8064 -3.6973 -1.5022 36 1 0.1652 -4.2357 -2.8931 37 1 -0.3381 -6.5975 -2.3313 38 1 -1.3098 -6.0597 -0.9404 39 1 -2.2871 -4.7744 -3.2570 40 1 -5.0761 -5.2330 -5.0284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754366036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:50 Heat of formation + Delta-G solvation = 9.887893 kcal Electronic energy + Delta-G solvation = -20965.574241 eV Core-core repulsion = 17780.677421 eV Total energy + Delta-G solvation = -3184.896819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05036 -39.26967 -36.30254 -34.88867 -34.11008 -32.60597 -31.52071 -29.72651 -28.18688 -27.07360 -25.71278 -24.14141 -22.91206 -22.24703 -20.96806 -19.68036 -17.66866 -17.08009 -16.97680 -16.65888 -16.23986 -15.28594 -14.82640 -14.57526 -14.44429 -14.31409 -13.86743 -13.44246 -13.23875 -13.13133 -13.00867 -12.95485 -12.70321 -12.41787 -12.06046 -11.94634 -11.88525 -10.94139 -10.83110 -10.76426 -10.42226 -10.32676 -10.08672 -9.78401 -9.71901 -9.63057 -9.41906 -8.84970 -8.75281 -6.90409 -5.74471 -3.03250 0.50791 0.88194 2.47786 2.84989 3.43941 3.45726 3.49596 3.51016 4.01507 4.24984 4.39416 4.42701 4.61233 4.74001 4.91292 5.05558 5.10116 5.19909 5.24331 5.34152 5.41734 5.43824 5.49673 5.56458 5.58112 5.67405 5.84042 5.91345 6.03110 6.08685 6.28398 6.28619 6.38120 6.46820 6.85385 6.87649 7.20044 7.55192 7.71198 7.98753 8.44525 9.55279 10.13607 10.48226 11.48569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.003174 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.293584 B = 8818.959299 C = 9225.721653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 C -0.179 4.179 4 C 0.115 3.885 5 N -0.491 5.491 6 C 0.134 3.866 7 C -0.180 4.180 8 C 0.564 3.436 9 O -0.523 6.523 10 N -0.607 5.607 11 C 0.074 3.926 12 C 0.117 3.883 13 C -0.139 4.139 14 C 0.157 3.843 15 N -0.733 5.733 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.351 12.735 7.623 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.002 3.998 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.200 5.200 6 C -0.024 4.024 7 C -0.186 4.186 8 C 0.351 3.649 9 O -0.399 6.399 10 N -0.339 5.339 11 C -0.069 4.069 12 C -0.005 4.005 13 C -0.178 4.178 14 C 0.028 3.972 15 N -0.377 5.377 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.159 0.841 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.733 12.442 8.073 23.893 hybrid contribution -1.576 -0.391 -0.491 1.696 sum 17.156 12.051 7.582 22.295 Atomic orbital electron populations 1.21129 0.89363 1.05478 1.03547 1.20408 0.97340 0.91351 0.90734 1.22041 0.95573 0.98663 1.03600 1.22925 0.91740 0.96410 0.93017 1.67710 1.40723 0.98267 1.13310 1.22985 0.90088 0.96656 0.92712 1.20874 0.95592 0.94360 1.07731 1.18106 0.82219 0.83236 0.81332 1.90797 1.33324 1.78861 1.36953 1.47839 1.35536 1.18939 1.31585 1.21937 0.89532 1.02450 0.92985 1.21573 0.92967 0.83936 1.02006 1.22065 0.96261 1.00209 0.99251 1.20538 0.89022 0.93384 0.94223 1.42338 1.26208 1.14222 1.54977 1.19205 1.02799 0.92381 1.22689 0.91184 1.24752 0.98996 0.97134 1.00212 1.69657 1.30638 1.23099 1.34980 0.86244 0.80682 0.81563 0.77568 1.21231 1.21678 1.21265 0.89957 0.90449 0.88700 0.84081 0.82311 0.82253 0.92238 0.90065 0.91384 0.90127 0.89424 0.91660 0.91925 0.96336 0.96160 0.78342 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.76 36.00 0.35 -1.14 16 2 C 0.01 0.11 5.95 -103.91 -0.62 -0.51 16 3 C -0.18 -1.50 9.82 -39.50 -0.39 -1.88 16 4 C 0.11 0.95 11.17 -17.47 -0.20 0.76 16 5 N -0.49 -5.01 10.35 -12.91 -0.13 -5.15 16 6 C 0.13 1.35 9.13 -17.13 -0.16 1.19 16 7 C -0.18 -2.09 4.73 -104.82 -0.50 -2.59 16 8 C 0.56 7.76 6.63 -12.33 -0.08 7.68 16 9 O -0.52 -9.03 14.72 5.32 0.08 -8.95 16 10 N -0.61 -7.31 2.87 -182.70 -0.52 -7.84 16 11 C 0.07 0.64 9.16 59.84 0.55 1.18 16 12 C 0.12 1.57 5.41 -4.05 -0.02 1.55 16 13 C -0.14 -2.32 5.65 -26.73 -0.15 -2.47 16 14 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 15 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16 16 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 20 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 26 H 0.09 1.29 5.68 -51.93 -0.30 1.00 16 27 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.16 1.29 6.77 -52.49 -0.36 0.94 16 30 H 0.06 0.39 7.26 -51.93 -0.38 0.01 16 31 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 32 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 33 H 0.08 0.90 8.07 -51.92 -0.42 0.48 16 34 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.56 7.67 -40.82 -0.31 10.24 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -34.54 335.06 -7.47 -42.01 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.82 Total: 5.47 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.48 Total: -0.63 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.27 Total: -60.67 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.54 -7.47 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754366036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.897 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds