Wall clock time and date at job start Mon Mar 30 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38404 * 120.85650 * 2 1 4 4 C 1.38303 * 119.30590 * 179.97438 * 3 2 1 5 5 N 1.31963 * 121.08345 * 0.02562 * 4 3 2 6 6 C 1.31659 * 121.87708 * 359.97438 * 5 4 3 7 7 C 1.39569 * 120.56396 * 359.74362 * 6 5 4 8 8 C 1.47845 * 120.55619 * 180.28138 * 7 6 5 9 9 O 1.21556 * 119.99658 * 126.61322 * 8 7 6 10 10 N 1.34776 * 120.00321 * 306.61473 * 8 7 6 11 11 C 1.46496 * 119.99861 * 4.21594 * 10 8 7 12 12 C 1.46500 * 119.99841 * 184.21009 * 10 8 7 13 13 C 1.52993 * 109.47038 * 90.00288 * 12 10 8 14 14 C 1.53003 * 109.47392 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.36935 * 119.99917 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00015 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00154 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99766 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46872 * 60.00065 * 20 18 16 22 22 H 1.48495 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46964 * 300.00355 * 20 18 16 24 24 H 1.09000 * 109.47218 * 85.26408 * 1 2 3 25 25 H 1.09005 * 109.46958 * 325.26013 * 1 2 3 26 26 H 1.08997 * 109.46661 * 205.26139 * 1 2 3 27 27 H 1.08003 * 120.34270 * 359.96596 * 3 2 1 28 28 H 1.08005 * 119.45861 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.72120 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47440 * 84.63041 * 11 10 8 31 31 H 1.09002 * 109.46974 * 204.62948 * 11 10 8 32 32 H 1.08996 * 109.47286 * 324.62490 * 11 10 8 33 33 H 1.09009 * 109.47162 * 210.00377 * 12 10 8 34 34 H 1.08997 * 109.47360 * 330.00032 * 12 10 8 35 35 H 1.09001 * 109.47567 * 299.99551 * 13 12 10 36 36 H 1.09004 * 109.47375 * 60.00091 * 13 12 10 37 37 H 1.09002 * 109.47068 * 300.00702 * 14 13 12 38 38 H 1.08997 * 109.46952 * 59.99777 * 14 13 12 39 39 H 0.96993 * 119.99840 * 359.97438 * 15 14 13 40 40 H 0.96999 * 119.99963 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6198 -1.1535 0.0005 7 6 2.2249 -1.2016 0.0059 8 6 1.5176 -2.4999 0.0122 9 8 0.6787 -2.7308 0.8610 10 7 1.8030 -3.4273 -0.9232 11 6 2.8777 -3.1868 -1.8892 12 6 1.0385 -4.6760 -0.9737 13 6 -0.1733 -4.4954 -1.8900 14 6 -0.9714 -5.7996 -1.9433 15 7 -2.1321 -5.6265 -2.8202 16 6 -2.9987 -6.6672 -3.0224 17 1 -2.8263 -7.6158 -2.5358 18 6 -4.0982 -6.5033 -3.8537 19 7 -4.3080 -5.3474 -4.4472 20 14 -5.2801 -7.9233 -4.1302 21 1 -5.8706 -8.3358 -2.8316 22 1 -6.3620 -7.4944 -5.0525 23 1 -4.5469 -9.0687 -4.7267 24 1 -0.3633 0.0848 -1.0241 25 1 -0.3633 0.8445 0.5856 26 1 -0.3632 -0.9294 0.4386 27 1 1.6965 2.1346 -0.0006 28 1 4.1558 2.0764 0.0001 29 1 4.1871 -2.0725 0.0010 30 1 3.8322 -3.4781 -1.4510 31 1 2.6962 -3.7752 -2.7886 32 1 2.9043 -2.1281 -2.1471 33 1 1.6716 -5.4742 -1.3615 34 1 0.7001 -4.9357 0.0293 35 1 -0.8064 -3.6973 -1.5022 36 1 0.1652 -4.2357 -2.8931 37 1 -0.3381 -6.5975 -2.3313 38 1 -1.3098 -6.0597 -0.9404 39 1 -2.2871 -4.7744 -3.2570 40 1 -5.0761 -5.2330 -5.0284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754366036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:50 Heat of formation + Delta-G solvation = -13.620010 kcal Electronic energy + Delta-G solvation = -20966.593620 eV Core-core repulsion = 17780.677421 eV Total energy + Delta-G solvation = -3185.916198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89834 -40.19017 -37.61296 -36.50140 -34.90096 -34.21221 -32.68799 -31.30271 -29.02981 -28.04772 -27.07201 -25.41623 -24.25685 -23.21276 -22.50325 -20.64856 -19.17142 -18.58434 -17.85955 -17.34424 -17.30641 -16.61835 -16.20335 -16.03723 -15.42661 -15.26539 -15.18371 -15.04042 -14.59357 -14.26622 -13.90395 -13.71779 -13.61855 -13.40728 -13.38707 -13.09638 -12.86407 -12.75321 -12.73803 -12.44921 -12.10473 -11.85009 -11.81921 -11.28048 -10.95052 -10.56536 -10.46272 -10.16208 -9.77398 -9.04229 -7.97480 -5.27601 -0.24211 0.14970 1.45631 1.47703 1.50024 1.56145 1.91603 2.54966 2.70866 3.27472 3.35928 3.50332 3.62704 3.74890 3.83416 3.99272 4.06777 4.16613 4.31071 4.37220 4.47355 4.50495 4.57343 4.58839 4.61714 4.69055 4.74391 4.82122 4.85645 4.88062 5.08617 5.24181 5.25680 5.29133 5.45665 5.46614 5.59754 6.23100 6.24503 6.84265 6.98176 7.30109 8.05109 8.28611 9.26178 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.003174 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.293584 B = 8818.959299 C = 9225.721653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 C -0.172 4.172 4 C 0.118 3.882 5 N -0.506 5.506 6 C 0.137 3.863 7 C -0.199 4.199 8 C 0.561 3.439 9 O -0.570 6.570 10 N -0.604 5.604 11 C 0.069 3.931 12 C 0.126 3.874 13 C -0.121 4.121 14 C 0.155 3.845 15 N -0.749 5.749 16 C -0.251 4.251 17 H 0.078 0.922 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.978 3.022 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.274 1.274 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.171 0.829 28 H 0.194 0.806 29 H 0.176 0.824 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.015 0.985 39 H 0.372 0.628 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.221 13.073 7.466 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.017 4.017 3 C -0.191 4.191 4 C -0.037 4.037 5 N -0.215 5.215 6 C -0.021 4.021 7 C -0.204 4.204 8 C 0.349 3.651 9 O -0.450 6.450 10 N -0.335 5.335 11 C -0.073 4.073 12 C 0.003 3.997 13 C -0.160 4.160 14 C 0.028 3.972 15 N -0.392 5.392 16 C -0.383 4.383 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.200 1.200 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.188 0.812 28 H 0.211 0.789 29 H 0.193 0.807 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.203 0.797 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.664 12.763 7.919 25.546 hybrid contribution -2.087 -0.427 -0.414 2.170 sum 18.578 12.336 7.506 23.529 Atomic orbital electron populations 1.21056 0.90027 1.04506 1.03589 1.20583 0.97223 0.92239 0.91625 1.22335 0.95752 0.98813 1.02193 1.23538 0.91999 0.97075 0.91095 1.67797 1.41055 0.98777 1.13890 1.23168 0.89346 0.97500 0.92047 1.20793 0.96332 0.93412 1.09903 1.18534 0.81637 0.84084 0.80870 1.90766 1.35503 1.79797 1.38945 1.47903 1.35761 1.18082 1.31742 1.22188 0.89435 1.02942 0.92688 1.21407 0.92391 0.85546 1.00387 1.21863 0.96735 0.97247 1.00194 1.20699 0.87932 0.95804 0.92757 1.42592 1.27597 1.13278 1.55726 1.19649 1.03235 0.93167 1.22204 0.90458 1.25647 1.00981 0.99846 1.00459 1.69824 1.31220 1.25220 1.35922 0.85147 0.78196 0.78550 0.77481 1.20450 1.21972 1.19983 0.89962 0.88392 0.92111 0.81157 0.78890 0.80701 0.89501 0.89142 0.91175 0.86944 0.90967 0.94360 0.91424 0.94696 0.96715 0.79652 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.76 71.24 0.70 -2.29 16 2 C -0.01 -0.17 5.95 -19.40 -0.12 -0.29 16 3 C -0.17 -2.46 9.82 22.32 0.22 -2.24 16 4 C 0.12 1.61 11.17 84.69 0.95 2.56 16 5 N -0.51 -9.13 10.35 -194.75 -2.01 -11.15 16 6 C 0.14 2.55 9.13 85.04 0.78 3.33 16 7 C -0.20 -4.55 4.73 -19.99 -0.09 -4.64 16 8 C 0.56 15.73 6.63 86.79 0.58 16.31 16 9 O -0.57 -20.82 14.72 -3.89 -0.06 -20.88 16 10 N -0.60 -14.20 2.87 -850.22 -2.44 -16.65 16 11 C 0.07 1.05 9.16 127.77 1.17 2.22 16 12 C 0.13 3.29 5.41 86.38 0.47 3.76 16 13 C -0.12 -4.10 5.65 30.59 0.17 -3.92 16 14 C 0.15 6.39 6.26 86.38 0.54 6.93 16 15 N -0.75 -39.98 5.60 -343.45 -1.92 -41.90 16 16 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 20 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.10 1.65 8.13 -2.38 -0.02 1.63 16 26 H 0.06 1.78 5.68 -2.39 -0.01 1.77 16 27 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.18 2.49 6.77 -2.91 -0.02 2.47 16 30 H 0.09 0.87 7.26 -2.39 -0.02 0.85 16 31 H 0.09 1.22 8.03 -2.39 -0.02 1.21 16 32 H 0.07 1.06 6.47 -2.39 -0.02 1.05 16 33 H 0.11 2.24 8.07 -2.38 -0.02 2.23 16 34 H 0.07 2.15 7.37 -2.39 -0.02 2.13 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.37 21.11 7.67 -92.71 -0.71 20.40 16 40 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -76.25 335.06 2.86 -73.39 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.33 Total: 24.89 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.66 Total: 3.97 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -6.10 Total: -130.27 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.25 2.86 -73.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754366036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.767 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds