Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83684 * 2 1 4 4 N 1.36443 * 108.85752 * 180.25048 * 3 2 1 5 5 H 0.97006 * 124.85289 * 179.76552 * 4 3 2 6 6 C 1.34661 * 110.29888 * 359.74804 * 4 3 2 7 7 C 1.36768 * 108.39279 * 0.02562 * 6 4 3 8 8 C 1.47271 * 126.93923 * 179.97438 * 7 6 4 9 9 O 1.21619 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99758 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99752 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00247 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47535 * 89.99455 * 20 18 16 22 22 H 1.48501 * 109.47316 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.47022 * 329.99657 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.08996 * 109.47530 * 270.15381 * 1 2 3 26 26 H 1.09004 * 109.46742 * 30.15088 * 1 2 3 27 27 H 1.09003 * 109.47388 * 150.14806 * 1 2 3 28 28 H 1.08007 * 125.57248 * 0.03358 * 3 2 1 29 29 H 1.07996 * 125.80165 * 180.02562 * 6 4 3 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0056 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0038 7 6 2.3863 -1.1740 0.0026 8 6 1.9748 -2.5881 0.0061 9 8 0.7936 -2.8777 0.0113 10 7 2.9072 -3.5613 0.0034 11 6 2.4979 -4.9679 0.0063 12 6 2.6902 -5.6683 -1.3492 13 6 4.1092 -6.0271 -0.8715 14 6 4.5478 -7.4411 -1.2575 15 7 5.1542 -7.4175 -2.5909 16 6 5.6251 -8.5757 -3.1495 17 1 5.5499 -9.5065 -2.6069 18 6 6.1991 -8.5534 -4.4132 19 7 6.6522 -9.6665 -4.9499 20 14 6.3298 -6.9434 -5.3514 21 1 7.6198 -6.2839 -5.0257 22 1 6.2668 -7.2140 -6.8102 23 1 5.2067 -6.0523 -4.9643 24 6 3.5689 -5.9200 0.5642 25 1 -0.3634 0.0028 1.0276 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9869 2.1059 0.0005 29 1 4.5663 -1.2861 -0.0069 30 1 3.8493 -3.3303 -0.0012 31 1 1.5095 -5.1202 0.4401 32 1 2.0442 -6.5350 -1.4884 33 1 2.6741 -4.9862 -2.1993 34 1 4.8560 -5.2711 -1.1146 35 1 5.2766 -7.8057 -0.5335 36 1 3.6807 -8.1014 -1.2643 37 1 5.2221 -6.5815 -3.0781 38 1 7.0536 -9.6509 -5.8328 39 1 4.2611 -5.4409 1.2566 40 1 3.1634 -6.8551 0.9504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755220822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = 37.758689 kcal Electronic energy + Delta-G solvation = -20780.694315 eV Core-core repulsion = 17597.006065 eV Total energy + Delta-G solvation = -3183.688251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44632 -39.86990 -38.00324 -34.65625 -33.17128 -32.64230 -31.20474 -29.92638 -27.12757 -26.76002 -25.53553 -23.83182 -22.63645 -21.32788 -20.38617 -19.48179 -19.02305 -18.54784 -17.51386 -16.43937 -15.78788 -15.19107 -14.78325 -14.45161 -14.32550 -14.13153 -14.08449 -13.63639 -13.35300 -13.23687 -12.84969 -12.59429 -12.55267 -12.40406 -12.24258 -11.74169 -11.57972 -11.37425 -10.88436 -10.58961 -10.18844 -10.15250 -9.87242 -9.81125 -9.55519 -9.05727 -8.86467 -8.76040 -8.55543 -7.18800 -5.74494 -3.09125 1.54249 2.15415 2.88921 3.22004 3.38268 3.41484 3.46178 3.49022 4.54171 4.61164 4.66369 4.74020 4.76962 4.83342 5.07986 5.08530 5.15120 5.34049 5.55417 5.56546 5.69973 5.71316 5.74022 5.87679 5.91512 5.92276 6.01823 6.07248 6.18985 6.22494 6.34652 6.54564 6.62461 6.65979 6.73139 6.87918 7.11769 7.58588 8.02850 8.34140 8.45135 9.24838 9.97427 10.17839 11.44237 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.003506 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.399296 B = 7983.876381 C = 8629.333425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.047 3.953 7 C -0.226 4.226 8 C 0.590 3.410 9 O -0.543 6.543 10 N -0.711 5.711 11 C 0.119 3.881 12 C -0.142 4.142 13 C -0.119 4.119 14 C 0.167 3.833 15 N -0.756 5.756 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.936 5.936 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.396 0.604 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 23.302 13.677 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.156 4.156 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.237 4.237 8 C 0.379 3.621 9 O -0.421 6.421 10 N -0.361 5.361 11 C 0.014 3.986 12 C -0.180 4.180 13 C -0.138 4.138 14 C 0.040 3.960 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.584 5.584 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.175 4.175 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.186 0.814 29 H 0.189 0.811 30 H 0.230 0.770 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.796 22.944 13.656 27.816 hybrid contribution 1.235 1.437 -0.908 2.101 sum -6.561 24.382 12.748 28.285 Atomic orbital electron populations 1.20198 0.89292 1.02663 1.01937 1.20574 0.95693 0.90327 1.04936 1.21584 0.82425 0.99236 1.12339 1.41489 1.08351 1.06689 1.57834 0.74609 1.21952 0.98588 0.83931 1.04485 1.20404 0.92696 0.92869 1.17749 1.17391 0.85407 0.83931 0.75370 1.90737 1.17215 1.83690 1.50420 1.45533 1.09279 1.05494 1.75814 1.21884 0.99183 0.79617 0.97925 1.23481 0.97234 1.00498 0.96809 1.22840 0.96487 0.99217 0.95207 1.20621 0.95647 0.92470 0.87309 1.42711 1.73427 1.07643 1.16331 1.19092 1.31050 0.87799 0.99260 0.89256 1.24677 1.00915 0.96495 0.97251 1.69707 1.46078 1.25367 1.17280 0.86531 0.77754 0.84478 0.79713 1.21192 1.21753 1.20314 1.23288 0.97703 0.99587 0.96873 0.91845 0.92417 0.90222 0.81429 0.81102 0.76959 0.88222 0.88940 0.91515 0.89706 0.95560 0.95364 0.80749 0.93111 0.91239 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.97 36.00 0.36 -0.50 16 2 C -0.11 -1.17 6.35 -102.54 -0.65 -1.82 16 3 C -0.03 -0.22 11.82 -16.83 -0.20 -0.41 16 4 N -0.55 -3.36 5.90 -12.85 -0.08 -3.43 16 5 H 0.42 1.09 8.96 -40.82 -0.37 0.73 16 6 C 0.05 0.37 11.40 -16.84 -0.19 0.18 16 7 C -0.23 -2.59 6.29 -103.35 -0.65 -3.24 16 8 C 0.59 8.09 7.81 -12.59 -0.10 7.99 16 9 O -0.54 -9.28 14.94 5.26 0.08 -9.20 16 10 N -0.71 -8.24 5.26 -54.14 -0.28 -8.52 16 11 C 0.12 1.50 4.30 -67.12 -0.29 1.21 16 12 C -0.14 -2.06 7.45 -25.82 -0.19 -2.25 16 13 C -0.12 -1.74 3.64 -89.71 -0.33 -2.06 16 14 C 0.17 3.19 6.10 -4.05 -0.02 3.16 16 15 N -0.76 -18.19 5.41 -59.91 -0.32 -18.51 16 16 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 17 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 19 N -0.94 -29.83 13.97 55.49 0.78 -29.05 16 20 Si 0.88 22.40 27.74 -169.99 -4.71 17.69 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 24 C -0.14 -1.57 7.38 -25.92 -0.19 -1.77 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.00 6.86 -51.93 -0.36 0.65 16 28 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 29 H 0.17 0.84 7.45 -52.49 -0.39 0.45 16 30 H 0.40 3.59 7.65 -40.82 -0.31 3.28 16 31 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 32 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.55 7.85 -51.93 -0.41 0.15 16 37 H 0.36 8.46 5.53 -40.82 -0.23 8.24 16 38 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.07 8.10 -51.93 -0.42 0.64 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -36.43 333.51 -8.06 -44.49 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.83 Total: 8.19 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.71 Total: -6.67 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.09 Total: -59.52 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.43 -8.06 -44.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755220822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.248 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds