Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83684 * 2 1 4 4 N 1.36443 * 108.85752 * 180.25048 * 3 2 1 5 5 H 0.97006 * 124.85289 * 179.76552 * 4 3 2 6 6 C 1.34661 * 110.29888 * 359.74804 * 4 3 2 7 7 C 1.36768 * 108.39279 * 0.02562 * 6 4 3 8 8 C 1.47271 * 126.93923 * 179.97438 * 7 6 4 9 9 O 1.21619 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99758 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99752 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00247 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47535 * 89.99455 * 20 18 16 22 22 H 1.48501 * 109.47316 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.47022 * 329.99657 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.08996 * 109.47530 * 270.15381 * 1 2 3 26 26 H 1.09004 * 109.46742 * 30.15088 * 1 2 3 27 27 H 1.09003 * 109.47388 * 150.14806 * 1 2 3 28 28 H 1.08007 * 125.57248 * 0.03358 * 3 2 1 29 29 H 1.07996 * 125.80165 * 180.02562 * 6 4 3 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0056 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0038 7 6 2.3863 -1.1740 0.0026 8 6 1.9748 -2.5881 0.0061 9 8 0.7936 -2.8777 0.0113 10 7 2.9072 -3.5613 0.0034 11 6 2.4979 -4.9679 0.0063 12 6 2.6902 -5.6683 -1.3492 13 6 4.1092 -6.0271 -0.8715 14 6 4.5478 -7.4411 -1.2575 15 7 5.1542 -7.4175 -2.5909 16 6 5.6251 -8.5757 -3.1495 17 1 5.5499 -9.5065 -2.6069 18 6 6.1991 -8.5534 -4.4132 19 7 6.6522 -9.6665 -4.9499 20 14 6.3298 -6.9434 -5.3514 21 1 7.6198 -6.2839 -5.0257 22 1 6.2668 -7.2140 -6.8102 23 1 5.2067 -6.0523 -4.9643 24 6 3.5689 -5.9200 0.5642 25 1 -0.3634 0.0028 1.0276 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9869 2.1059 0.0005 29 1 4.5663 -1.2861 -0.0069 30 1 3.8493 -3.3303 -0.0012 31 1 1.5095 -5.1202 0.4401 32 1 2.0442 -6.5350 -1.4884 33 1 2.6741 -4.9862 -2.1993 34 1 4.8560 -5.2711 -1.1146 35 1 5.2766 -7.8057 -0.5335 36 1 3.6807 -8.1014 -1.2643 37 1 5.2221 -6.5815 -3.0781 38 1 7.0536 -9.6509 -5.8328 39 1 4.2611 -5.4409 1.2566 40 1 3.1634 -6.8551 0.9504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755220822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = 11.066309 kcal Electronic energy + Delta-G solvation = -20781.851784 eV Core-core repulsion = 17597.006065 eV Total energy + Delta-G solvation = -3184.845719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09549 -40.89830 -39.11434 -36.46234 -34.43156 -33.32196 -33.19982 -30.73908 -28.70651 -27.43389 -26.61391 -25.18865 -23.96251 -22.86100 -21.13438 -20.52080 -20.03460 -19.43191 -19.13585 -17.37874 -16.81898 -16.60695 -16.11263 -15.93279 -15.58765 -15.17800 -14.90694 -14.82310 -14.47986 -14.34504 -14.17770 -13.74887 -13.57524 -13.48560 -13.33406 -13.25859 -12.97729 -12.69461 -12.30735 -12.17511 -11.87266 -11.69650 -11.38857 -11.17060 -10.89976 -10.85477 -10.04240 -9.51510 -9.27184 -9.16580 -8.02947 -5.35747 0.80153 1.36670 1.40990 1.48454 1.51118 2.22886 2.48406 2.49554 2.58733 3.27884 3.49585 3.61314 3.90156 3.96039 4.00985 4.08078 4.13102 4.31327 4.46310 4.56085 4.68824 4.78162 4.87271 4.89939 4.92206 4.93084 4.96200 5.00845 5.14304 5.17617 5.27934 5.34510 5.40521 5.72462 5.77441 5.84330 5.98172 6.21774 6.66938 6.74924 7.08792 7.40347 7.86211 8.05229 9.18986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.003506 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.399296 B = 7983.876381 C = 8629.333425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.152 4.152 3 C -0.011 4.011 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.069 3.931 7 C -0.272 4.272 8 C 0.584 3.416 9 O -0.591 6.591 10 N -0.699 5.699 11 C 0.126 3.874 12 C -0.147 4.147 13 C -0.112 4.112 14 C 0.162 3.838 15 N -0.758 5.758 16 C -0.235 4.235 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.200 0.800 29 H 0.204 0.796 30 H 0.411 0.589 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.021 0.979 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.095 0.905 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 26.802 14.547 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.139 4.139 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.070 4.070 7 C -0.282 4.282 8 C 0.375 3.625 9 O -0.472 6.472 10 N -0.350 5.350 11 C 0.020 3.980 12 C -0.186 4.186 13 C -0.131 4.131 14 C 0.036 3.964 15 N -0.404 5.404 16 C -0.366 4.366 17 H 0.073 0.927 18 C -0.259 4.259 19 N -0.637 5.637 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.179 1.179 24 C -0.154 4.154 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.221 0.779 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.456 26.496 14.575 30.922 hybrid contribution 0.818 0.305 -1.115 1.416 sum -5.638 26.801 13.461 30.517 Atomic orbital electron populations 1.20100 0.90025 1.01964 1.01546 1.20820 0.95976 0.91505 1.07538 1.21971 0.82428 0.99798 1.09733 1.41558 1.08769 1.06485 1.56032 0.72168 1.22337 0.98248 0.84742 1.01661 1.20414 0.94693 0.91782 1.21321 1.17861 0.84959 0.85237 0.74446 1.90706 1.19197 1.84506 1.52833 1.45401 1.09859 1.04663 1.75099 1.21713 0.99262 0.80407 0.96595 1.23499 0.97294 1.00294 0.97484 1.22780 0.96417 0.96392 0.97472 1.20817 0.94983 0.95558 0.85021 1.42736 1.73400 1.06221 1.18006 1.19087 1.30169 0.88286 0.99109 0.92714 1.25554 1.01252 1.00520 0.98529 1.69897 1.47796 1.28206 1.17798 0.85353 0.78820 0.79918 0.77363 1.19858 1.22386 1.17933 1.23203 0.97091 0.99700 0.95377 0.92180 0.90347 0.93557 0.78301 0.77897 0.75194 0.89427 0.89813 0.92757 0.88455 0.95382 0.96067 0.80145 0.93338 0.88640 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.97 71.24 0.71 -0.94 16 2 C -0.15 -3.10 6.35 -18.52 -0.12 -3.21 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.53 -4.32 5.90 -194.56 -1.15 -5.47 16 5 H 0.44 0.17 8.96 -92.70 -0.83 -0.67 16 6 C 0.07 0.84 11.40 83.91 0.96 1.79 16 7 C -0.27 -5.84 6.29 -19.04 -0.12 -5.96 16 8 C 0.58 15.83 7.81 86.62 0.68 16.51 16 9 O -0.59 -21.04 14.94 -4.09 -0.06 -21.10 16 10 N -0.70 -14.99 5.26 -443.44 -2.33 -17.32 16 11 C 0.13 3.02 4.30 45.52 0.20 3.21 16 12 C -0.15 -4.13 7.45 31.18 0.23 -3.90 16 13 C -0.11 -3.02 3.64 -10.21 -0.04 -3.06 16 14 C 0.16 6.02 6.10 86.38 0.53 6.54 16 15 N -0.76 -35.70 5.41 -343.46 -1.86 -37.55 16 16 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 17 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.99 -64.19 13.97 21.65 0.30 -63.89 16 20 Si 0.96 45.88 27.74 68.60 1.90 47.78 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 24 C -0.12 -2.35 7.38 31.12 0.23 -2.12 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.26 6.86 -2.39 -0.02 1.24 16 28 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 29 H 0.20 0.99 7.45 -2.91 -0.02 0.97 16 30 H 0.41 6.12 7.65 -92.71 -0.71 5.41 16 31 H 0.09 2.37 7.50 -2.39 -0.02 2.35 16 32 H 0.08 2.48 7.90 -2.39 -0.02 2.46 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.02 0.83 7.85 -2.39 -0.02 0.81 16 37 H 0.37 16.34 5.53 -92.71 -0.51 15.83 16 38 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -82.58 333.51 1.35 -81.23 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -1.04 Total: 23.00 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.58 Total: -6.68 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.03 Total: -124.23 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -82.58 1.35 -81.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755220822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.293 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds