Wall clock time and date at job start Mon Mar 30 2020 01:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38403 * 120.85767 * 2 1 4 4 C 1.38306 * 119.30608 * 179.97438 * 3 2 1 5 5 N 1.31955 * 121.08050 * 359.97438 * 4 3 2 6 6 C 1.31660 * 121.88312 * 359.97438 * 5 4 3 7 7 C 1.39568 * 120.56206 * 0.02562 * 6 5 4 8 8 C 1.47843 * 120.55627 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99886 * 186.00805 * 8 7 6 10 10 N 1.34777 * 120.00328 * 6.01173 * 8 7 6 11 11 C 1.46495 * 120.00033 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47291 * 35.00275 * 11 10 8 13 13 C 1.52993 * 109.46998 * 274.99423 * 11 10 8 14 14 C 1.53005 * 109.46781 * 154.99526 * 11 10 8 15 15 H 1.08994 * 109.47743 * 294.99867 * 14 11 10 16 16 C 1.52999 * 109.47091 * 55.00391 * 14 11 10 17 17 N 1.46500 * 109.46771 * 174.99729 * 14 11 10 18 18 C 1.36943 * 119.99789 * 155.00041 * 17 14 11 19 19 H 1.07998 * 120.00017 * 0.02562 * 18 17 14 20 20 C 1.38812 * 119.99824 * 180.02562 * 18 17 14 21 21 N 1.31622 * 120.00066 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00356 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46995 * 89.99960 * 22 20 18 24 24 H 1.48496 * 109.47348 * 210.00371 * 22 20 18 25 25 H 1.48505 * 109.46634 * 330.00261 * 22 20 18 26 26 H 1.09003 * 109.46560 * 96.59548 * 1 2 3 27 27 H 1.08995 * 109.47336 * 216.59614 * 1 2 3 28 28 H 1.08997 * 109.47218 * 336.59888 * 1 2 3 29 29 H 1.08001 * 120.34538 * 0.24379 * 3 2 1 30 30 H 1.08003 * 119.45737 * 179.97438 * 4 3 2 31 31 H 1.07992 * 119.72055 * 180.02562 * 6 5 4 32 32 H 0.97002 * 119.99559 * 359.97438 * 10 8 7 33 33 H 1.08993 * 109.47513 * 299.99842 * 13 11 10 34 34 H 1.09002 * 109.47411 * 60.00630 * 13 11 10 35 35 H 1.09004 * 109.46994 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.47146 * 299.99516 * 16 14 11 37 37 H 1.08996 * 109.47759 * 59.99749 * 16 14 11 38 38 H 1.09004 * 109.47458 * 179.97438 * 16 14 11 39 39 H 0.97002 * 120.00477 * 335.00133 * 17 14 11 40 40 H 0.96998 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1507 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6198 -1.1536 0.0026 7 6 2.2250 -1.2016 0.0021 8 6 1.5176 -2.4999 0.0027 9 8 0.3076 -2.5328 -0.1079 10 7 2.2145 -3.6470 0.1260 11 6 1.5135 -4.9333 0.1272 12 1 0.6587 -4.8819 -0.5473 13 6 1.0277 -5.2481 1.5434 14 6 2.4672 -6.0342 -0.3414 15 1 2.7437 -5.8574 -1.3808 16 6 3.7250 -6.0241 0.5297 17 7 1.8045 -7.3357 -0.2269 18 6 2.2027 -8.3789 -1.0196 19 1 3.0056 -8.2423 -1.7288 20 6 1.5744 -9.6120 -0.9115 21 7 1.9575 -10.6148 -1.6730 22 14 0.1861 -9.8485 0.3158 23 1 -1.1093 -9.5240 -0.3337 24 1 0.1686 -11.2598 0.7774 25 1 0.3955 -8.9496 1.4792 26 1 -0.3632 -0.1180 -1.0209 27 1 -0.3634 -0.8250 0.6126 28 1 -0.3633 0.9431 0.4081 29 1 1.6967 2.1346 0.0040 30 1 4.1559 2.0763 0.0001 31 1 4.1871 -2.0725 0.0038 32 1 3.1801 -3.6207 0.2139 33 1 1.8824 -5.2995 2.2177 34 1 0.3482 -4.4638 1.8771 35 1 0.5065 -6.2054 1.5443 36 1 4.2181 -5.0557 0.4446 37 1 3.4486 -6.2009 1.5691 38 1 4.4043 -6.8086 0.1963 39 1 1.0835 -7.4585 0.4104 40 1 1.5182 -11.4763 -1.5977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755233144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:43 Heat of formation + Delta-G solvation = -8.823392 kcal Electronic energy + Delta-G solvation = -21409.705456 eV Core-core repulsion = 18223.997254 eV Total energy + Delta-G solvation = -3185.708202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83241 -40.30829 -38.53953 -35.84302 -34.71476 -33.92570 -32.65768 -31.06581 -30.04713 -28.80902 -26.16303 -25.72198 -24.52199 -23.14042 -21.88403 -20.78969 -20.01781 -18.86711 -17.66830 -17.21340 -16.81417 -16.58377 -16.39225 -15.95990 -15.62608 -15.58138 -14.95302 -14.72489 -14.57842 -14.07287 -13.85108 -13.74453 -13.64417 -13.40761 -13.23242 -13.14274 -12.93853 -12.85367 -12.66999 -12.17855 -11.96333 -11.78693 -11.62079 -11.08360 -11.00849 -10.61796 -10.38277 -10.26576 -10.06853 -9.35752 -8.02524 -5.36429 -0.36897 0.18103 1.37079 1.40519 1.46889 1.81017 2.00894 2.47849 2.81134 3.29026 3.31412 3.58599 3.67087 3.70784 3.77632 3.85513 4.02367 4.03224 4.26335 4.43554 4.55295 4.56945 4.62444 4.69974 4.75874 4.81490 4.85253 4.90937 4.96905 5.13568 5.16504 5.21457 5.36064 5.47455 5.59200 5.62910 5.77703 6.21045 6.45543 6.85656 7.06696 7.13661 7.82005 8.00322 9.18819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.003813 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.327254 B = 7342.274210 C = 7830.307586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.176 4.176 4 C 0.122 3.878 5 N -0.513 5.513 6 C 0.137 3.863 7 C -0.208 4.208 8 C 0.560 3.440 9 O -0.562 6.562 10 N -0.703 5.703 11 C 0.147 3.853 12 H 0.068 0.932 13 C -0.157 4.157 14 C 0.168 3.832 15 H 0.049 0.951 16 C -0.162 4.162 17 N -0.747 5.747 18 C -0.227 4.227 19 H 0.060 0.940 20 C -0.061 4.061 21 N -0.983 5.983 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.249 1.249 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.194 0.806 31 H 0.173 0.827 32 H 0.410 0.590 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.367 0.633 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 26.992 7.590 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.004 4.004 3 C -0.196 4.196 4 C -0.033 4.033 5 N -0.222 5.222 6 C -0.022 4.022 7 C -0.213 4.213 8 C 0.348 3.652 9 O -0.442 6.442 10 N -0.356 5.356 11 C 0.041 3.959 12 H 0.087 0.913 13 C -0.215 4.215 14 C 0.059 3.941 15 H 0.067 0.933 16 C -0.221 4.221 17 N -0.393 5.393 18 C -0.358 4.358 19 H 0.078 0.922 20 C -0.253 4.253 21 N -0.634 5.634 22 Si 0.773 3.227 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.173 1.173 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.191 0.809 30 H 0.210 0.790 31 H 0.190 0.810 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.754 26.851 7.356 27.896 hybrid contribution -1.276 -1.095 0.281 1.705 sum 0.478 25.757 7.637 26.869 Atomic orbital electron populations 1.21022 0.89068 1.03944 1.03466 1.20762 0.97902 0.91930 0.89853 1.22411 0.95558 0.99070 1.02526 1.23596 0.92292 0.96971 0.90439 1.67774 1.41393 0.98914 1.14117 1.23214 0.90025 0.97488 0.91436 1.20834 0.95770 0.93678 1.11057 1.18368 0.86761 0.84187 0.75867 1.90727 1.14927 1.87506 1.51049 1.45928 1.11410 1.04730 1.73573 1.20971 0.95050 0.82041 0.97823 0.91336 1.22123 1.01974 1.01253 0.96132 1.20507 0.91902 0.83618 0.98027 0.93290 1.22369 0.97878 1.01330 1.00547 1.42784 1.42530 1.08032 1.45930 1.19013 1.13900 0.89603 1.13329 0.92151 1.25433 1.02514 0.95717 1.01632 1.69870 1.46247 1.02803 1.44437 0.85549 0.79815 0.77133 0.80160 1.20759 1.22195 1.17326 0.90698 0.90651 0.89173 0.80882 0.78957 0.80963 0.75028 0.90524 0.92312 0.92531 0.90434 0.92097 0.94010 0.79802 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.84 71.24 0.63 -1.56 16 2 C 0.00 0.07 5.95 -19.40 -0.12 -0.04 16 3 C -0.18 -2.24 9.78 22.33 0.22 -2.02 16 4 C 0.12 1.61 11.17 84.69 0.95 2.55 16 5 N -0.51 -9.46 10.35 -194.76 -2.01 -11.48 16 6 C 0.14 2.56 10.70 85.04 0.91 3.47 16 7 C -0.21 -4.49 5.89 -19.99 -0.12 -4.60 16 8 C 0.56 14.83 7.69 86.79 0.67 15.50 16 9 O -0.56 -18.30 13.17 -3.88 -0.05 -18.35 16 10 N -0.70 -17.11 4.94 -445.43 -2.20 -19.31 16 11 C 0.15 4.48 2.62 44.99 0.12 4.60 16 12 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 13 C -0.16 -4.48 9.00 71.98 0.65 -3.83 16 14 C 0.17 5.93 2.93 44.99 0.13 6.06 16 15 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 16 C -0.16 -4.76 9.01 71.98 0.65 -4.11 16 17 N -0.75 -33.65 4.84 -322.94 -1.56 -35.22 16 18 C -0.23 -12.70 10.41 84.03 0.87 -11.83 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 21 N -0.98 -62.83 13.97 21.65 0.30 -62.52 16 22 Si 0.95 45.23 27.74 68.60 1.90 47.13 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.80 5.97 -2.39 -0.01 1.78 16 28 H 0.09 1.10 8.06 -2.39 -0.02 1.08 16 29 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.17 2.46 6.47 -2.91 -0.02 2.44 16 32 H 0.41 7.72 4.68 -92.71 -0.43 7.29 16 33 H 0.08 1.93 6.56 -2.39 -0.02 1.92 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.76 6.29 -2.39 -0.02 1.75 16 36 H 0.08 1.61 6.29 -2.39 -0.02 1.60 16 37 H 0.06 1.72 6.57 -2.39 -0.02 1.70 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.37 15.98 3.63 -92.71 -0.34 15.64 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.88 322.32 2.64 -70.23 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.24 Total: 28.46 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 6.03 Total: 1.06 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -5.48 Total: -128.53 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -72.88 2.64 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755233144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.410 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds