Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38268 * 120.00045 * 2 1 4 4 N 1.32432 * 119.82758 * 355.60804 * 3 2 1 5 5 C 1.31842 * 121.77711 * 179.97438 * 4 3 2 6 6 C 1.38379 * 121.21990 * 0.02562 * 5 4 3 7 7 C 1.38335 * 119.50651 * 0.25215 * 6 5 4 8 8 C 1.39990 * 118.36628 * 359.50822 * 7 6 5 9 9 C 1.47419 * 120.61028 * 180.23831 * 8 7 6 10 10 O 1.21601 * 120.00217 * 231.03521 * 9 8 7 11 11 N 1.34784 * 120.00015 * 51.03061 * 9 8 7 12 12 C 1.46500 * 120.00057 * 186.03661 * 11 9 8 13 13 C 1.50694 * 109.47013 * 90.00064 * 12 11 9 14 14 H 1.08002 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99981 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00116 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47307 * 60.00567 * 17 15 13 19 19 H 1.48501 * 109.47273 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47450 * 300.00299 * 17 15 13 21 21 C 1.46496 * 119.99839 * 6.03816 * 11 9 8 22 22 C 1.53000 * 109.47274 * 123.63810 * 21 11 9 23 23 C 1.53002 * 109.47186 * 243.64397 * 21 11 9 24 24 H 1.08991 * 109.47427 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47072 * 300.00146 * 1 2 3 26 26 H 1.09006 * 109.47543 * 59.99675 * 1 2 3 27 27 H 0.96995 * 119.99787 * 180.02562 * 2 1 3 28 28 H 1.08002 * 119.39390 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.24833 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.82096 * 179.74180 * 7 6 5 31 31 H 1.09004 * 109.46560 * 210.00322 * 12 11 9 32 32 H 1.09004 * 109.46907 * 329.99974 * 12 11 9 33 33 H 0.97000 * 119.99824 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.47190 * 3.63805 * 21 11 9 35 35 H 1.09001 * 109.46524 * 60.00086 * 22 21 11 36 36 H 1.09003 * 109.47086 * 179.97438 * 22 21 11 37 37 H 1.08995 * 109.47443 * 300.00046 * 22 21 11 38 38 H 1.08997 * 109.47340 * 60.00022 * 23 21 11 39 39 H 1.09004 * 109.46969 * 179.97438 * 23 21 11 40 40 H 1.09001 * 109.46574 * 299.99787 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1563 1.1974 0.0000 4 7 1.4937 2.3406 -0.0880 5 6 2.1137 3.5042 -0.0909 6 6 3.4925 3.5823 -0.0022 7 6 4.2366 2.4195 0.0861 8 6 3.5584 1.1949 0.0929 9 6 4.3019 -0.0744 0.1905 10 8 4.0894 -0.9665 -0.6080 11 7 5.2173 -0.2459 1.1648 12 6 6.0495 -1.4515 1.1841 13 6 7.3079 -1.2059 0.3924 14 1 7.4718 -0.2475 -0.0778 15 6 8.2507 -2.2044 0.2690 16 7 8.0514 -3.3714 0.8420 17 14 9.8103 -1.9002 -0.7129 18 1 10.5619 -0.7698 -0.1108 19 1 10.6539 -3.1222 -0.6933 20 1 9.4551 -1.5671 -2.1158 21 6 5.3802 0.7732 2.2046 22 6 5.1896 0.1326 3.5809 23 6 6.7833 1.3762 2.1124 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9499 -0.8400 -0.0004 28 1 1.5350 4.4131 -0.1639 29 1 3.9842 4.5438 -0.0064 30 1 5.3139 2.4557 0.1521 31 1 6.3099 -1.6967 2.2137 32 1 5.4977 -2.2809 0.7414 33 1 8.7145 -4.0740 0.7549 34 1 4.6374 1.5583 2.0633 35 1 5.9325 -0.6525 3.7221 36 1 5.3112 0.8908 4.3545 37 1 4.1900 -0.2969 3.6466 38 1 6.9190 1.8326 1.1319 39 1 6.9043 2.1348 2.8858 40 1 7.5261 0.5910 2.2537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050789038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -15.877020 kcal Electronic energy + Delta-G solvation = -22337.209838 eV Core-core repulsion = 19151.195768 eV Total energy + Delta-G solvation = -3186.014070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78756 -40.01320 -37.74053 -36.56986 -34.99168 -33.44298 -32.47602 -31.36838 -29.33441 -28.09402 -27.02085 -25.84682 -24.38785 -23.09144 -22.68071 -20.20470 -18.81402 -18.57307 -18.40576 -17.61266 -17.09439 -16.48293 -16.09269 -15.67975 -15.53473 -15.25423 -14.98427 -14.81775 -14.25962 -14.17474 -14.03302 -13.69948 -13.47945 -13.32065 -13.23831 -12.92550 -12.87166 -12.70675 -12.52605 -12.27389 -12.11414 -11.78702 -11.57068 -11.24625 -11.03366 -10.63867 -10.57433 -10.30832 -9.47804 -8.69213 -8.19463 -6.31785 0.01407 0.50430 1.36709 1.40546 1.47321 1.80870 2.22859 2.32193 2.43965 2.93340 3.10368 3.50436 3.77304 3.95434 3.97439 4.16444 4.26041 4.34757 4.40006 4.48448 4.64957 4.67077 4.79769 4.82697 4.89688 4.96067 5.00965 5.03638 5.11538 5.20666 5.31100 5.38982 5.55034 5.62892 5.63435 5.86204 6.09839 6.18813 6.27865 6.70441 6.77551 7.15472 7.27300 7.43166 8.87654 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020582 B = 0.005595 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.083708 B = 5002.994543 C = 5280.749637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.729 5.729 3 C 0.424 3.576 4 N -0.555 5.555 5 C 0.167 3.833 6 C -0.228 4.228 7 C -0.008 4.008 8 C -0.269 4.269 9 C 0.554 3.446 10 O -0.597 6.597 11 N -0.584 5.584 12 C 0.262 3.738 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.124 3.876 22 C -0.155 4.155 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.408 0.592 28 H 0.200 0.800 29 H 0.174 0.826 30 H 0.139 0.861 31 H 0.029 0.971 32 H -0.005 1.005 33 H 0.265 0.735 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 16.176 3.785 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.360 5.360 3 C 0.187 3.813 4 N -0.274 5.274 5 C 0.008 3.992 6 C -0.250 4.250 7 C -0.034 4.034 8 C -0.280 4.280 9 C 0.344 3.656 10 O -0.479 6.479 11 N -0.313 5.313 12 C 0.142 3.858 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.022 3.978 22 C -0.213 4.213 23 C -0.211 4.211 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.245 0.755 28 H 0.217 0.783 29 H 0.192 0.808 30 H 0.157 0.843 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.695 15.456 3.396 19.677 hybrid contribution 2.076 -1.140 -0.604 2.444 sum -9.619 14.316 2.792 17.472 Atomic orbital electron populations 1.21594 0.77551 1.02998 1.02001 1.44664 1.08025 1.04909 1.78405 1.18322 0.86525 0.87652 0.88833 1.67374 1.40112 0.97542 1.22361 1.23347 0.92854 0.94814 0.88204 1.22098 0.95089 0.99352 1.08451 1.21769 1.00879 0.90582 0.90173 1.20142 0.93669 0.94644 1.19532 1.18531 0.79509 0.86993 0.80610 1.90689 1.68385 1.45501 1.43362 1.48254 1.35247 1.22042 1.25770 1.18740 0.88479 0.82221 0.96408 1.21615 1.03496 0.99143 1.32450 0.92592 1.25788 1.01872 0.94632 0.96734 1.70049 1.36856 1.04577 1.45448 0.85565 0.78993 0.78026 0.78838 1.18314 1.20656 1.20580 1.21439 0.99083 0.90083 0.87244 1.22101 1.01152 1.01806 0.96256 1.22141 0.95828 1.01028 1.02067 0.89367 0.92059 0.92443 0.75500 0.78340 0.80810 0.84300 0.95326 0.98664 0.92590 0.88083 0.93622 0.88451 0.93381 0.93121 0.89004 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.36 10.71 127.77 1.37 3.73 16 2 N -0.73 -23.36 5.73 -365.93 -2.10 -25.46 16 3 C 0.42 13.94 7.47 133.64 1.00 14.94 16 4 N -0.56 -15.19 9.55 -192.51 -1.84 -17.03 16 5 C 0.17 3.30 11.16 84.72 0.95 4.25 16 6 C -0.23 -4.42 10.09 22.33 0.23 -4.20 16 7 C -0.01 -0.22 7.72 22.72 0.18 -0.04 16 8 C -0.27 -9.49 4.73 -19.88 -0.09 -9.58 16 9 C 0.55 24.78 6.62 86.66 0.57 25.36 16 10 O -0.60 -31.88 15.14 -4.03 -0.06 -31.94 16 11 N -0.58 -25.49 2.39 -806.00 -1.92 -27.42 16 12 C 0.26 14.14 4.74 85.63 0.41 14.55 16 13 C -0.53 -29.91 7.84 25.60 0.20 -29.71 16 14 H 0.06 3.12 7.60 -2.91 -0.02 3.09 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 17 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 C 0.12 4.09 2.49 44.99 0.11 4.20 16 22 C -0.16 -4.66 9.10 71.98 0.66 -4.01 16 23 C -0.15 -4.73 8.37 71.98 0.60 -4.13 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 27 H 0.41 14.89 6.67 -92.71 -0.62 14.27 16 28 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.14 3.75 6.05 -2.91 -0.02 3.73 16 31 H 0.03 1.57 6.24 -2.39 -0.01 1.56 16 32 H 0.00 -0.30 7.35 -2.38 -0.02 -0.32 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.10 2.92 5.02 -2.39 -0.01 2.90 16 35 H 0.04 1.59 6.55 -2.39 -0.02 1.57 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.57 6.75 -2.39 -0.02 1.55 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.86 6.92 -2.39 -0.02 1.85 16 Total: -1.00 -74.60 325.88 3.46 -71.14 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.44 Total: 23.43 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.63 Total: 16.29 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -5.58 Total: -125.74 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.06 Total: -31.94 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.60 3.46 -71.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050789038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.268 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds